Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1047

Experiment: M9 with sucrose; no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1046 and EX28DRAFT_1047 are separated by 112 nucleotidesEX28DRAFT_1047 and EX28DRAFT_1048 overlap by 4 nucleotides EX28DRAFT_1046: EX28DRAFT_1046 - Transcriptional regulator, at 1,057,730 to 1,058,626 _1046 EX28DRAFT_1047: EX28DRAFT_1047 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 1,058,739 to 1,059,137 _1047 EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669 _1048 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1057.804 kb on - strandat 1057.900 kb on - strand, within EX28DRAFT_1046at 1058.017 kb on - strand, within EX28DRAFT_1046at 1058.106 kb on + strand, within EX28DRAFT_1046at 1058.113 kb on + strand, within EX28DRAFT_1046at 1058.164 kb on + strand, within EX28DRAFT_1046at 1058.165 kb on - strand, within EX28DRAFT_1046at 1058.193 kb on - strand, within EX28DRAFT_1046at 1058.240 kb on + strand, within EX28DRAFT_1046at 1058.241 kb on - strand, within EX28DRAFT_1046at 1058.585 kb on + strandat 1058.590 kb on + strandat 1058.591 kb on - strandat 1058.591 kb on - strandat 1058.621 kb on + strandat 1058.665 kb on + strandat 1058.735 kb on + strandat 1058.736 kb on - strandat 1058.736 kb on - strandat 1058.764 kb on + strandat 1058.765 kb on - strandat 1058.897 kb on + strand, within EX28DRAFT_1047at 1058.947 kb on + strand, within EX28DRAFT_1047at 1058.948 kb on - strand, within EX28DRAFT_1047at 1058.975 kb on - strand, within EX28DRAFT_1047at 1059.355 kb on + strand, within EX28DRAFT_1048at 1059.558 kb on - strand, within EX28DRAFT_1048at 1059.558 kb on - strand, within EX28DRAFT_1048at 1059.558 kb on - strand, within EX28DRAFT_1048at 1059.970 kb on - strand, within EX28DRAFT_1048at 1060.051 kb on - strand, within EX28DRAFT_1048at 1060.051 kb on - strand, within EX28DRAFT_1048at 1060.112 kb on + strand, within EX28DRAFT_1048

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
remove
1,057,804 - +0.0
1,057,900 - EX28DRAFT_1046 0.19 -0.8
1,058,017 - EX28DRAFT_1046 0.32 -0.0
1,058,106 + EX28DRAFT_1046 0.42 -0.1
1,058,113 + EX28DRAFT_1046 0.43 -1.7
1,058,164 + EX28DRAFT_1046 0.48 -0.5
1,058,165 - EX28DRAFT_1046 0.48 +3.1
1,058,193 - EX28DRAFT_1046 0.52 +0.0
1,058,240 + EX28DRAFT_1046 0.57 +0.1
1,058,241 - EX28DRAFT_1046 0.57 +0.7
1,058,585 + +0.1
1,058,590 + -0.4
1,058,591 - +0.1
1,058,591 - +0.1
1,058,621 + +0.5
1,058,665 + -0.1
1,058,735 + +1.7
1,058,736 - -0.4
1,058,736 - +1.9
1,058,764 + -0.0
1,058,765 - -1.9
1,058,897 + EX28DRAFT_1047 0.40 +0.2
1,058,947 + EX28DRAFT_1047 0.52 -0.2
1,058,948 - EX28DRAFT_1047 0.52 -1.8
1,058,975 - EX28DRAFT_1047 0.59 -0.1
1,059,355 + EX28DRAFT_1048 0.14 -1.1
1,059,558 - EX28DRAFT_1048 0.28 +0.1
1,059,558 - EX28DRAFT_1048 0.28 +0.9
1,059,558 - EX28DRAFT_1048 0.28 -0.4
1,059,970 - EX28DRAFT_1048 0.54 +0.4
1,060,051 - EX28DRAFT_1048 0.60 -0.4
1,060,051 - EX28DRAFT_1048 0.60 -0.3
1,060,112 + EX28DRAFT_1048 0.64 -0.3

Or see this region's nucleotide sequence