Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1011

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1010 and EX28DRAFT_1011 are separated by 787 nucleotidesEX28DRAFT_1011 and EX28DRAFT_1012 are separated by 496 nucleotidesEX28DRAFT_1012 and EX28DRAFT_1013 are separated by 143 nucleotides EX28DRAFT_1010: EX28DRAFT_1010 - Cold shock proteins, at 1,015,739 to 1,015,957 _1010 EX28DRAFT_1011: EX28DRAFT_1011 - FOG: EAL domain, at 1,016,745 to 1,018,268 _1011 EX28DRAFT_1012: EX28DRAFT_1012 - Predicted membrane protein, at 1,018,765 to 1,019,109 _1012 EX28DRAFT_1013: EX28DRAFT_1013 - hypothetical protein, at 1,019,253 to 1,019,702 _1013 Position (kb) 1016 1017 1018 1019Strain fitness (log2 ratio) -3 -2 -1 0 1at 1015.962 kb on - strandat 1016.280 kb on - strandat 1016.280 kb on - strandat 1016.281 kb on + strandat 1016.282 kb on - strandat 1016.295 kb on + strandat 1016.295 kb on + strandat 1016.295 kb on + strandat 1016.296 kb on - strandat 1016.300 kb on - strandat 1016.300 kb on - strandat 1016.364 kb on + strandat 1016.430 kb on + strandat 1016.431 kb on - strandat 1016.549 kb on + strandat 1016.560 kb on + strandat 1016.561 kb on - strandat 1016.564 kb on - strandat 1016.571 kb on + strandat 1016.652 kb on - strandat 1016.655 kb on + strandat 1016.729 kb on - strandat 1016.742 kb on + strandat 1016.759 kb on + strandat 1016.862 kb on + strandat 1016.862 kb on + strandat 1016.862 kb on + strandat 1016.863 kb on - strandat 1016.885 kb on + strandat 1017.148 kb on + strand, within EX28DRAFT_1011at 1017.230 kb on - strand, within EX28DRAFT_1011at 1017.243 kb on + strand, within EX28DRAFT_1011at 1017.244 kb on - strand, within EX28DRAFT_1011at 1017.256 kb on + strand, within EX28DRAFT_1011at 1017.319 kb on + strand, within EX28DRAFT_1011at 1017.436 kb on + strand, within EX28DRAFT_1011at 1017.476 kb on + strand, within EX28DRAFT_1011at 1017.671 kb on + strand, within EX28DRAFT_1011at 1017.671 kb on + strand, within EX28DRAFT_1011at 1017.691 kb on + strand, within EX28DRAFT_1011at 1017.692 kb on - strand, within EX28DRAFT_1011at 1017.709 kb on + strand, within EX28DRAFT_1011at 1017.710 kb on - strand, within EX28DRAFT_1011at 1017.722 kb on + strand, within EX28DRAFT_1011at 1017.755 kb on - strand, within EX28DRAFT_1011at 1017.761 kb on + strand, within EX28DRAFT_1011at 1017.779 kb on + strand, within EX28DRAFT_1011at 1017.923 kb on + strand, within EX28DRAFT_1011at 1017.923 kb on + strand, within EX28DRAFT_1011at 1017.923 kb on + strand, within EX28DRAFT_1011at 1017.999 kb on - strand, within EX28DRAFT_1011at 1018.010 kb on + strand, within EX28DRAFT_1011at 1018.106 kb on + strand, within EX28DRAFT_1011at 1018.150 kb on - strandat 1018.194 kb on + strandat 1018.512 kb on - strandat 1018.628 kb on + strandat 1018.628 kb on + strandat 1018.629 kb on - strandat 1018.680 kb on + strandat 1018.721 kb on - strandat 1018.721 kb on - strandat 1018.764 kb on + strandat 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.882 kb on + strand, within EX28DRAFT_1012at 1018.883 kb on - strand, within EX28DRAFT_1012at 1018.893 kb on + strand, within EX28DRAFT_1012at 1019.005 kb on - strand, within EX28DRAFT_1012at 1019.033 kb on - strand, within EX28DRAFT_1012at 1019.080 kb on + strandat 1019.140 kb on + strandat 1019.140 kb on + strandat 1019.183 kb on + strandat 1019.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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1,015,962 - +0.1
1,016,280 - -0.8
1,016,280 - +0.6
1,016,281 + -0.1
1,016,282 - -0.4
1,016,295 + +0.5
1,016,295 + +0.2
1,016,295 + -0.6
1,016,296 - +0.8
1,016,300 - +0.4
1,016,300 - -0.4
1,016,364 + +0.9
1,016,430 + -1.6
1,016,431 - -3.4
1,016,549 + -1.0
1,016,560 + -1.4
1,016,561 - +1.6
1,016,564 - -1.3
1,016,571 + +0.2
1,016,652 - -0.6
1,016,655 + +0.1
1,016,729 - +0.2
1,016,742 + +0.1
1,016,759 + +0.5
1,016,862 + -1.9
1,016,862 + -0.5
1,016,862 + +0.2
1,016,863 - +0.2
1,016,885 + -0.2
1,017,148 + EX28DRAFT_1011 0.26 +0.8
1,017,230 - EX28DRAFT_1011 0.32 -0.4
1,017,243 + EX28DRAFT_1011 0.33 +0.8
1,017,244 - EX28DRAFT_1011 0.33 -2.4
1,017,256 + EX28DRAFT_1011 0.34 -1.1
1,017,319 + EX28DRAFT_1011 0.38 -0.7
1,017,436 + EX28DRAFT_1011 0.45 -0.4
1,017,476 + EX28DRAFT_1011 0.48 -0.0
1,017,671 + EX28DRAFT_1011 0.61 +1.6
1,017,671 + EX28DRAFT_1011 0.61 +0.4
1,017,691 + EX28DRAFT_1011 0.62 +0.2
1,017,692 - EX28DRAFT_1011 0.62 +0.1
1,017,709 + EX28DRAFT_1011 0.63 -0.3
1,017,710 - EX28DRAFT_1011 0.63 -0.4
1,017,722 + EX28DRAFT_1011 0.64 +0.0
1,017,755 - EX28DRAFT_1011 0.66 -0.8
1,017,761 + EX28DRAFT_1011 0.67 -0.8
1,017,779 + EX28DRAFT_1011 0.68 +0.0
1,017,923 + EX28DRAFT_1011 0.77 -0.1
1,017,923 + EX28DRAFT_1011 0.77 -2.0
1,017,923 + EX28DRAFT_1011 0.77 +0.2
1,017,999 - EX28DRAFT_1011 0.82 -0.2
1,018,010 + EX28DRAFT_1011 0.83 +0.0
1,018,106 + EX28DRAFT_1011 0.89 +0.2
1,018,150 - +1.1
1,018,194 + -1.2
1,018,512 - -0.7
1,018,628 + -0.2
1,018,628 + -0.7
1,018,629 - -0.2
1,018,680 + +0.4
1,018,721 - -0.4
1,018,721 - +0.3
1,018,764 + +0.3
1,018,882 + EX28DRAFT_1012 0.34 -0.0
1,018,882 + EX28DRAFT_1012 0.34 -0.1
1,018,882 + EX28DRAFT_1012 0.34 +0.4
1,018,882 + EX28DRAFT_1012 0.34 +0.6
1,018,883 - EX28DRAFT_1012 0.34 -0.7
1,018,893 + EX28DRAFT_1012 0.37 +0.2
1,019,005 - EX28DRAFT_1012 0.70 -0.4
1,019,033 - EX28DRAFT_1012 0.78 +0.4
1,019,080 + +0.1
1,019,140 + +0.6
1,019,140 + -0.8
1,019,183 + -0.4
1,019,224 - -0.1

Or see this region's nucleotide sequence