Experiment: M9 with sucrose; no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0800 and EX28DRAFT_0801 overlap by 4 nucleotides EX28DRAFT_0801 and EX28DRAFT_0802 are separated by 16 nucleotides EX28DRAFT_0802 and EX28DRAFT_0803 are separated by 9 nucleotides EX28DRAFT_0803 and EX28DRAFT_0804 overlap by 8 nucleotides
EX28DRAFT_0800: EX28DRAFT_0800 - FHA domain protein, at 799,587 to 801,350
_0800
EX28DRAFT_0801: EX28DRAFT_0801 - Serine/threonine protein phosphatase, at 801,347 to 802,144
_0801
EX28DRAFT_0802: EX28DRAFT_0802 - hypothetical protein, at 802,161 to 803,159
_0802
EX28DRAFT_0803: EX28DRAFT_0803 - Protein of avirulence locus involved in temperature-dependent protein secretion, at 803,169 to 803,981
_0803
EX28DRAFT_0804: EX28DRAFT_0804 - type VI secretion system lysozyme-like protein, at 803,974 to 804,537
_0804
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.226 kb on - strand at 801.294 kb on + strand at 801.421 kb on - strand at 801.511 kb on + strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.512 kb on - strand, within EX28DRAFT_0801 at 801.563 kb on + strand, within EX28DRAFT_0801 at 801.618 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.816 kb on - strand, within EX28DRAFT_0801 at 801.958 kb on + strand, within EX28DRAFT_0801 at 801.990 kb on + strand, within EX28DRAFT_0801 at 801.991 kb on - strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.046 kb on + strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.047 kb on - strand, within EX28DRAFT_0801 at 802.142 kb on + strand at 802.305 kb on - strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.418 kb on + strand, within EX28DRAFT_0802 at 802.424 kb on + strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.425 kb on - strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.803 kb on + strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.804 kb on - strand, within EX28DRAFT_0802 at 802.935 kb on + strand, within EX28DRAFT_0802 at 803.031 kb on - strand, within EX28DRAFT_0802 at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.174 kb on + strand at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.568 kb on - strand, within EX28DRAFT_0803 at 803.881 kb on - strand, within EX28DRAFT_0803
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control remove 801,226 - -0.5 801,294 + +0.2 801,421 - +0.2 801,511 + EX28DRAFT_0801 0.21 -0.5 801,512 - EX28DRAFT_0801 0.21 +0.7 801,512 - EX28DRAFT_0801 0.21 -0.9 801,563 + EX28DRAFT_0801 0.27 -1.8 801,618 - EX28DRAFT_0801 0.34 -0.3 801,816 - EX28DRAFT_0801 0.59 +0.5 801,816 - EX28DRAFT_0801 0.59 +0.2 801,958 + EX28DRAFT_0801 0.77 +0.5 801,990 + EX28DRAFT_0801 0.81 -0.9 801,991 - EX28DRAFT_0801 0.81 -0.4 802,046 + EX28DRAFT_0801 0.88 +0.4 802,046 + EX28DRAFT_0801 0.88 +0.2 802,046 + EX28DRAFT_0801 0.88 +1.3 802,046 + EX28DRAFT_0801 0.88 -0.6 802,047 - EX28DRAFT_0801 0.88 -1.1 802,047 - EX28DRAFT_0801 0.88 +0.7 802,047 - EX28DRAFT_0801 0.88 +0.6 802,047 - EX28DRAFT_0801 0.88 +0.2 802,142 + +0.5 802,305 - EX28DRAFT_0802 0.14 +1.4 802,418 + EX28DRAFT_0802 0.26 -0.7 802,418 + EX28DRAFT_0802 0.26 +2.6 802,424 + EX28DRAFT_0802 0.26 +0.6 802,425 - EX28DRAFT_0802 0.26 -0.3 802,425 - EX28DRAFT_0802 0.26 +1.0 802,425 - EX28DRAFT_0802 0.26 +0.2 802,803 + EX28DRAFT_0802 0.64 +0.2 802,803 + EX28DRAFT_0802 0.64 +1.4 802,804 - EX28DRAFT_0802 0.64 +1.0 802,804 - EX28DRAFT_0802 0.64 -0.9 802,935 + EX28DRAFT_0802 0.77 +0.3 803,031 - EX28DRAFT_0802 0.87 +0.7 803,174 + -1.3 803,174 + +0.0 803,174 + +1.3 803,174 + +0.0 803,568 - EX28DRAFT_0803 0.49 +0.2 803,568 - EX28DRAFT_0803 0.49 +0.4 803,568 - EX28DRAFT_0803 0.49 -1.5 803,881 - EX28DRAFT_0803 0.88 -0.8
Or see this region's nucleotide sequence