Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0613

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0611 and EX28DRAFT_0612 overlap by 4 nucleotidesEX28DRAFT_0612 and EX28DRAFT_0613 are separated by 21 nucleotidesEX28DRAFT_0613 and EX28DRAFT_0614 overlap by 1 nucleotidesEX28DRAFT_0614 and EX28DRAFT_0615 overlap by 8 nucleotides EX28DRAFT_0611: EX28DRAFT_0611 - Flagellar hook-length control protein, at 608,998 to 610,233 _0611 EX28DRAFT_0612: EX28DRAFT_0612 - flagellar export protein FliJ, at 610,230 to 610,673 _0612 EX28DRAFT_0613: EX28DRAFT_0613 - flagellar protein export ATPase FliI, at 610,695 to 612,065 _0613 EX28DRAFT_0614: EX28DRAFT_0614 - Flagellar biosynthesis/type III secretory pathway protein, at 612,065 to 612,772 _0614 EX28DRAFT_0615: EX28DRAFT_0615 - flagellar motor switch protein FliG, at 612,765 to 613,763 _0615 Position (kb) 610 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 609.774 kb on + strand, within EX28DRAFT_0611at 609.849 kb on + strand, within EX28DRAFT_0611at 609.900 kb on + strand, within EX28DRAFT_0611at 609.931 kb on - strand, within EX28DRAFT_0611at 610.332 kb on + strand, within EX28DRAFT_0612at 610.332 kb on + strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.469 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.473 kb on - strand, within EX28DRAFT_0612at 610.599 kb on + strand, within EX28DRAFT_0612at 610.696 kb on + strandat 610.696 kb on + strandat 610.697 kb on - strandat 610.926 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.015 kb on + strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.016 kb on - strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.082 kb on + strand, within EX28DRAFT_0613at 611.087 kb on + strand, within EX28DRAFT_0613at 611.089 kb on + strand, within EX28DRAFT_0613at 611.090 kb on - strand, within EX28DRAFT_0613at 611.409 kb on - strand, within EX28DRAFT_0613at 611.419 kb on - strand, within EX28DRAFT_0613at 611.473 kb on + strand, within EX28DRAFT_0613at 611.504 kb on + strand, within EX28DRAFT_0613at 611.505 kb on - strand, within EX28DRAFT_0613at 611.534 kb on + strand, within EX28DRAFT_0613at 611.535 kb on - strand, within EX28DRAFT_0613at 611.771 kb on + strand, within EX28DRAFT_0613at 612.004 kb on - strandat 612.170 kb on + strand, within EX28DRAFT_0614at 612.171 kb on - strand, within EX28DRAFT_0614at 612.584 kb on - strand, within EX28DRAFT_0614at 612.585 kb on + strand, within EX28DRAFT_0614at 612.585 kb on + strand, within EX28DRAFT_0614at 612.586 kb on - strand, within EX28DRAFT_0614at 612.766 kb on + strandat 612.767 kb on - strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.772 kb on + strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strandat 612.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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609,774 + EX28DRAFT_0611 0.63 +0.5
609,849 + EX28DRAFT_0611 0.69 +0.2
609,900 + EX28DRAFT_0611 0.73 +1.1
609,931 - EX28DRAFT_0611 0.75 -0.3
610,332 + EX28DRAFT_0612 0.23 +2.1
610,332 + EX28DRAFT_0612 0.23 -0.1
610,469 - EX28DRAFT_0612 0.54 +0.7
610,469 - EX28DRAFT_0612 0.54 +1.3
610,473 - EX28DRAFT_0612 0.55 +0.9
610,473 - EX28DRAFT_0612 0.55 +0.3
610,599 + EX28DRAFT_0612 0.83 +0.9
610,696 + -0.6
610,696 + +1.4
610,697 - -2.8
610,926 + EX28DRAFT_0613 0.17 -0.0
611,015 + EX28DRAFT_0613 0.23 +0.1
611,015 + EX28DRAFT_0613 0.23 +0.4
611,015 + EX28DRAFT_0613 0.23 +0.4
611,016 - EX28DRAFT_0613 0.23 -0.5
611,016 - EX28DRAFT_0613 0.23 -0.4
611,082 + EX28DRAFT_0613 0.28 -0.2
611,082 + EX28DRAFT_0613 0.28 +0.8
611,087 + EX28DRAFT_0613 0.29 +0.7
611,089 + EX28DRAFT_0613 0.29 -1.6
611,090 - EX28DRAFT_0613 0.29 +1.2
611,409 - EX28DRAFT_0613 0.52 +0.2
611,419 - EX28DRAFT_0613 0.53 +0.1
611,473 + EX28DRAFT_0613 0.57 -0.1
611,504 + EX28DRAFT_0613 0.59 +0.2
611,505 - EX28DRAFT_0613 0.59 +1.0
611,534 + EX28DRAFT_0613 0.61 +1.0
611,535 - EX28DRAFT_0613 0.61 -0.1
611,771 + EX28DRAFT_0613 0.78 +0.5
612,004 - +1.1
612,170 + EX28DRAFT_0614 0.15 +0.4
612,171 - EX28DRAFT_0614 0.15 +0.2
612,584 - EX28DRAFT_0614 0.73 +1.1
612,585 + EX28DRAFT_0614 0.73 -0.2
612,585 + EX28DRAFT_0614 0.73 -0.7
612,586 - EX28DRAFT_0614 0.74 +0.3
612,766 + -0.2
612,767 - +1.3
612,772 + -0.1
612,772 + +0.1
612,772 + +0.9
612,772 + +0.3
612,772 + -0.7
612,772 + +0.4
612,772 + -0.4
612,772 + +0.4
612,772 + -1.3
612,772 + +0.5
612,772 + -0.2
612,772 + +0.5
612,772 + -0.1
612,772 + +0.3
612,772 + +0.1
612,772 + -0.5
612,772 + +1.3
612,772 + +1.0
612,772 + -0.5
612,773 - -0.8
612,773 - +0.6
612,773 - -0.1
612,773 - -0.9
612,773 - -0.0
612,773 - -0.7
612,773 - +0.9
612,773 - +1.4
612,773 - +0.1
612,773 - -1.0
612,773 - +0.3
612,773 - +0.4
612,773 - -0.9
612,773 - -2.4
612,773 - +0.4
612,773 - +0.6
612,773 - +0.3
612,773 - +0.9

Or see this region's nucleotide sequence