Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0507

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0506 and EX28DRAFT_0507 are separated by 111 nucleotidesEX28DRAFT_0507 and EX28DRAFT_0508 are separated by 84 nucleotides EX28DRAFT_0506: EX28DRAFT_0506 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 497,261 to 498,697 _0506 EX28DRAFT_0507: EX28DRAFT_0507 - Phosphomannomutase, at 498,809 to 500,179 _0507 EX28DRAFT_0508: EX28DRAFT_0508 - Undecaprenyl-phosphate glucose phosphotransferase, at 500,264 to 501,658 _0508 Position (kb) 498 499 500 501Strain fitness (log2 ratio) -2 -1 0 1 2 3at 497.837 kb on + strand, within EX28DRAFT_0506at 497.837 kb on + strand, within EX28DRAFT_0506at 497.838 kb on - strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.855 kb on + strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.856 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 497.859 kb on - strand, within EX28DRAFT_0506at 498.053 kb on - strand, within EX28DRAFT_0506at 498.195 kb on - strand, within EX28DRAFT_0506at 498.353 kb on - strand, within EX28DRAFT_0506at 498.368 kb on + strand, within EX28DRAFT_0506at 498.386 kb on + strand, within EX28DRAFT_0506at 498.386 kb on + strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.387 kb on - strand, within EX28DRAFT_0506at 498.512 kb on - strand, within EX28DRAFT_0506at 498.563 kb on + strandat 498.563 kb on + strandat 498.563 kb on + strandat 498.563 kb on + strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.564 kb on - strandat 498.695 kb on + strandat 498.696 kb on - strandat 498.708 kb on + strandat 498.836 kb on + strandat 498.836 kb on + strandat 498.841 kb on + strandat 498.842 kb on - strandat 499.119 kb on - strand, within EX28DRAFT_0507at 499.119 kb on - strand, within EX28DRAFT_0507at 499.292 kb on + strand, within EX28DRAFT_0507at 499.334 kb on - strand, within EX28DRAFT_0507at 499.387 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.601 kb on + strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.602 kb on - strand, within EX28DRAFT_0507at 499.808 kb on + strand, within EX28DRAFT_0507at 500.178 kb on - strandat 500.180 kb on + strandat 500.180 kb on + strandat 500.181 kb on - strandat 500.181 kb on - strandat 500.318 kb on - strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.397 kb on + strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.398 kb on - strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.399 kb on + strandat 500.400 kb on - strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.401 kb on + strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.402 kb on - strandat 500.597 kb on + strand, within EX28DRAFT_0508at 500.597 kb on + strand, within EX28DRAFT_0508at 500.598 kb on - strand, within EX28DRAFT_0508at 500.610 kb on - strand, within EX28DRAFT_0508at 500.688 kb on - strand, within EX28DRAFT_0508at 500.792 kb on + strand, within EX28DRAFT_0508at 500.840 kb on + strand, within EX28DRAFT_0508at 500.851 kb on + strand, within EX28DRAFT_0508at 500.851 kb on + strand, within EX28DRAFT_0508at 500.852 kb on - strand, within EX28DRAFT_0508at 500.888 kb on + strand, within EX28DRAFT_0508at 500.889 kb on - strand, within EX28DRAFT_0508at 500.923 kb on + strand, within EX28DRAFT_0508at 500.986 kb on + strand, within EX28DRAFT_0508at 501.097 kb on + strand, within EX28DRAFT_0508at 501.098 kb on - strand, within EX28DRAFT_0508at 501.098 kb on - strand, within EX28DRAFT_0508

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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497,837 + EX28DRAFT_0506 0.40 +0.4
497,837 + EX28DRAFT_0506 0.40 -0.9
497,838 - EX28DRAFT_0506 0.40 -0.9
497,855 + EX28DRAFT_0506 0.41 +0.0
497,855 + EX28DRAFT_0506 0.41 -0.4
497,855 + EX28DRAFT_0506 0.41 -0.3
497,856 - EX28DRAFT_0506 0.41 +0.0
497,856 - EX28DRAFT_0506 0.41 -0.1
497,856 - EX28DRAFT_0506 0.41 +0.4
497,859 - EX28DRAFT_0506 0.42 -0.4
497,859 - EX28DRAFT_0506 0.42 -0.1
497,859 - EX28DRAFT_0506 0.42 -0.5
498,053 - EX28DRAFT_0506 0.55 +0.0
498,195 - EX28DRAFT_0506 0.65 -1.1
498,353 - EX28DRAFT_0506 0.76 -0.1
498,368 + EX28DRAFT_0506 0.77 +0.2
498,386 + EX28DRAFT_0506 0.78 +0.1
498,386 + EX28DRAFT_0506 0.78 -0.7
498,387 - EX28DRAFT_0506 0.78 -0.4
498,387 - EX28DRAFT_0506 0.78 +0.3
498,387 - EX28DRAFT_0506 0.78 +1.3
498,512 - EX28DRAFT_0506 0.87 -0.3
498,563 + -0.3
498,563 + +0.7
498,563 + -0.7
498,563 + +1.7
498,564 - -0.2
498,564 - +0.1
498,564 - -0.3
498,564 - +2.2
498,695 + +0.6
498,696 - -0.7
498,708 + +1.2
498,836 + -0.1
498,836 + +1.1
498,841 + +0.7
498,842 - -0.1
499,119 - EX28DRAFT_0507 0.23 +0.7
499,119 - EX28DRAFT_0507 0.23 +0.5
499,292 + EX28DRAFT_0507 0.35 -0.2
499,334 - EX28DRAFT_0507 0.38 -1.1
499,387 + EX28DRAFT_0507 0.42 -0.0
499,601 + EX28DRAFT_0507 0.58 +0.1
499,601 + EX28DRAFT_0507 0.58 -0.1
499,601 + EX28DRAFT_0507 0.58 +0.3
499,601 + EX28DRAFT_0507 0.58 -0.1
499,601 + EX28DRAFT_0507 0.58 -0.3
499,601 + EX28DRAFT_0507 0.58 +1.2
499,602 - EX28DRAFT_0507 0.58 +1.6
499,602 - EX28DRAFT_0507 0.58 +0.6
499,602 - EX28DRAFT_0507 0.58 +0.4
499,808 + EX28DRAFT_0507 0.73 -0.2
500,178 - -1.1
500,180 + +0.4
500,180 + +0.6
500,181 - +0.2
500,181 - -0.1
500,318 - +1.2
500,397 + +0.1
500,397 + -0.4
500,397 + -2.1
500,397 + -0.3
500,397 + +1.4
500,397 + -0.9
500,397 + +0.8
500,398 - -0.3
500,398 - +3.1
500,398 - +0.1
500,398 - -0.1
500,398 - +0.3
500,398 - -1.2
500,398 - -0.4
500,399 + -0.2
500,399 + +1.0
500,399 + +0.3
500,399 + -0.4
500,399 + +0.4
500,400 - -0.1
500,401 + +0.1
500,401 + +0.9
500,401 + -0.5
500,401 + -0.7
500,401 + +0.1
500,401 + -0.2
500,401 + +0.4
500,402 - -1.1
500,402 - -0.4
500,402 - +0.0
500,402 - -0.4
500,402 - +0.1
500,402 - +0.2
500,402 - -0.3
500,402 - +0.5
500,402 - +0.6
500,402 - -0.1
500,402 - -2.2
500,597 + EX28DRAFT_0508 0.24 +0.3
500,597 + EX28DRAFT_0508 0.24 +0.1
500,598 - EX28DRAFT_0508 0.24 +0.6
500,610 - EX28DRAFT_0508 0.25 -0.6
500,688 - EX28DRAFT_0508 0.30 -0.6
500,792 + EX28DRAFT_0508 0.38 -0.2
500,840 + EX28DRAFT_0508 0.41 -0.3
500,851 + EX28DRAFT_0508 0.42 +0.8
500,851 + EX28DRAFT_0508 0.42 -0.5
500,852 - EX28DRAFT_0508 0.42 +0.7
500,888 + EX28DRAFT_0508 0.45 -0.1
500,889 - EX28DRAFT_0508 0.45 +1.3
500,923 + EX28DRAFT_0508 0.47 -2.1
500,986 + EX28DRAFT_0508 0.52 +0.9
501,097 + EX28DRAFT_0508 0.60 -1.4
501,098 - EX28DRAFT_0508 0.60 +0.5
501,098 - EX28DRAFT_0508 0.60 +2.7

Or see this region's nucleotide sequence