Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0169

Experiment: M9 with sucrose; no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0168 and EX28DRAFT_0169 are separated by 266 nucleotidesEX28DRAFT_0169 and EX28DRAFT_0170 are separated by 227 nucleotidesEX28DRAFT_0170 and EX28DRAFT_0171 are separated by 83 nucleotides EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732 _0168 EX28DRAFT_0169: EX28DRAFT_0169 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 117,999 to 119,429 _0169 EX28DRAFT_0170: EX28DRAFT_0170 - uracil phosphoribosyltransferase (EC 2.4.2.9), at 119,657 to 120,283 _0170 EX28DRAFT_0171: EX28DRAFT_0171 - uracil-xanthine permease, at 120,367 to 121,656 _0171 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 117.757 kb on + strandat 117.758 kb on - strandat 117.758 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.762 kb on - strandat 117.919 kb on - strandat 117.919 kb on - strandat 117.919 kb on - strandat 118.010 kb on + strandat 118.260 kb on - strand, within EX28DRAFT_0169at 118.357 kb on - strand, within EX28DRAFT_0169at 118.357 kb on - strand, within EX28DRAFT_0169at 118.439 kb on + strand, within EX28DRAFT_0169at 118.439 kb on + strand, within EX28DRAFT_0169at 118.497 kb on - strand, within EX28DRAFT_0169at 118.507 kb on - strand, within EX28DRAFT_0169at 118.529 kb on - strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.532 kb on + strand, within EX28DRAFT_0169at 118.533 kb on - strand, within EX28DRAFT_0169at 118.533 kb on - strand, within EX28DRAFT_0169at 118.587 kb on + strand, within EX28DRAFT_0169at 118.724 kb on + strand, within EX28DRAFT_0169at 118.724 kb on + strand, within EX28DRAFT_0169at 118.725 kb on - strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.754 kb on + strand, within EX28DRAFT_0169at 118.872 kb on - strand, within EX28DRAFT_0169at 118.873 kb on + strand, within EX28DRAFT_0169at 118.886 kb on + strand, within EX28DRAFT_0169at 118.917 kb on + strand, within EX28DRAFT_0169at 118.933 kb on - strand, within EX28DRAFT_0169at 118.933 kb on - strand, within EX28DRAFT_0169at 118.935 kb on + strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.936 kb on - strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.937 kb on + strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 118.938 kb on - strand, within EX28DRAFT_0169at 119.180 kb on + strand, within EX28DRAFT_0169at 119.181 kb on - strand, within EX28DRAFT_0169at 119.188 kb on - strand, within EX28DRAFT_0169at 119.271 kb on - strand, within EX28DRAFT_0169at 119.322 kb on - strandat 119.393 kb on + strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.394 kb on - strandat 119.427 kb on + strandat 119.465 kb on + strandat 119.466 kb on - strandat 119.466 kb on - strandat 119.466 kb on - strandat 119.471 kb on + strandat 119.471 kb on + strandat 119.481 kb on + strandat 119.482 kb on - strandat 119.567 kb on + strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.568 kb on - strandat 119.592 kb on + strandat 119.960 kb on + strand, within EX28DRAFT_0170at 119.993 kb on + strand, within EX28DRAFT_0170at 119.994 kb on - strand, within EX28DRAFT_0170at 119.994 kb on - strand, within EX28DRAFT_0170at 120.110 kb on - strand, within EX28DRAFT_0170at 120.118 kb on + strand, within EX28DRAFT_0170at 120.119 kb on - strand, within EX28DRAFT_0170at 120.191 kb on + strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.192 kb on - strand, within EX28DRAFT_0170at 120.230 kb on + strandat 120.296 kb on - strandat 120.296 kb on - strandat 120.346 kb on + strandat 120.346 kb on + strandat 120.347 kb on - strandat 120.347 kb on - strandat 120.349 kb on + strandat 120.350 kb on - strandat 120.366 kb on + strandat 120.367 kb on - strandat 120.367 kb on - strandat 120.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose; no stress control
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117,757 + -1.2
117,758 - -1.0
117,758 - -1.8
117,762 - -1.3
117,762 - -0.6
117,762 - -1.5
117,762 - -1.0
117,919 - +0.4
117,919 - +0.0
117,919 - +1.2
118,010 + -0.3
118,260 - EX28DRAFT_0169 0.18 -0.4
118,357 - EX28DRAFT_0169 0.25 -0.9
118,357 - EX28DRAFT_0169 0.25 -2.2
118,439 + EX28DRAFT_0169 0.31 -0.1
118,439 + EX28DRAFT_0169 0.31 -0.6
118,497 - EX28DRAFT_0169 0.35 -0.4
118,507 - EX28DRAFT_0169 0.35 +0.6
118,529 - EX28DRAFT_0169 0.37 +0.9
118,532 + EX28DRAFT_0169 0.37 +0.0
118,532 + EX28DRAFT_0169 0.37 +1.9
118,532 + EX28DRAFT_0169 0.37 +0.7
118,533 - EX28DRAFT_0169 0.37 -0.6
118,533 - EX28DRAFT_0169 0.37 +0.0
118,587 + EX28DRAFT_0169 0.41 +0.7
118,724 + EX28DRAFT_0169 0.51 -0.6
118,724 + EX28DRAFT_0169 0.51 -0.8
118,725 - EX28DRAFT_0169 0.51 -0.4
118,754 + EX28DRAFT_0169 0.53 -0.6
118,754 + EX28DRAFT_0169 0.53 -0.3
118,754 + EX28DRAFT_0169 0.53 +0.2
118,872 - EX28DRAFT_0169 0.61 +0.1
118,873 + EX28DRAFT_0169 0.61 +0.4
118,886 + EX28DRAFT_0169 0.62 -2.9
118,917 + EX28DRAFT_0169 0.64 -0.0
118,933 - EX28DRAFT_0169 0.65 +0.1
118,933 - EX28DRAFT_0169 0.65 -1.3
118,935 + EX28DRAFT_0169 0.65 +0.5
118,936 - EX28DRAFT_0169 0.65 +1.8
118,936 - EX28DRAFT_0169 0.65 +0.5
118,936 - EX28DRAFT_0169 0.65 +1.7
118,937 + EX28DRAFT_0169 0.66 -0.4
118,937 + EX28DRAFT_0169 0.66 -0.0
118,937 + EX28DRAFT_0169 0.66 +0.6
118,938 - EX28DRAFT_0169 0.66 -0.5
118,938 - EX28DRAFT_0169 0.66 -0.4
118,938 - EX28DRAFT_0169 0.66 +0.1
118,938 - EX28DRAFT_0169 0.66 +0.4
118,938 - EX28DRAFT_0169 0.66 -0.3
118,938 - EX28DRAFT_0169 0.66 -0.1
119,180 + EX28DRAFT_0169 0.83 +1.0
119,181 - EX28DRAFT_0169 0.83 +0.1
119,188 - EX28DRAFT_0169 0.83 +0.1
119,271 - EX28DRAFT_0169 0.89 -0.6
119,322 - +1.1
119,393 + +0.5
119,394 - +0.3
119,394 - +1.1
119,394 - +0.1
119,427 + +0.0
119,465 + -0.2
119,466 - -0.0
119,466 - -1.0
119,466 - +0.6
119,471 + -0.3
119,471 + +0.4
119,481 + +0.1
119,482 - -1.2
119,567 + -1.5
119,568 - +0.1
119,568 - +2.8
119,568 - +0.5
119,568 - +0.0
119,592 + +0.2
119,960 + EX28DRAFT_0170 0.48 +0.1
119,993 + EX28DRAFT_0170 0.54 +0.1
119,994 - EX28DRAFT_0170 0.54 -0.5
119,994 - EX28DRAFT_0170 0.54 +0.2
120,110 - EX28DRAFT_0170 0.72 -0.2
120,118 + EX28DRAFT_0170 0.74 -0.2
120,119 - EX28DRAFT_0170 0.74 +1.3
120,191 + EX28DRAFT_0170 0.85 +0.6
120,192 - EX28DRAFT_0170 0.85 +1.1
120,192 - EX28DRAFT_0170 0.85 +0.6
120,192 - EX28DRAFT_0170 0.85 +1.4
120,230 + -1.0
120,296 - -1.6
120,296 - +1.7
120,346 + +0.5
120,346 + +0.0
120,347 - -0.3
120,347 - +0.7
120,349 + +0.2
120,350 - -0.0
120,366 + +0.4
120,367 - -0.0
120,367 - -1.5
120,426 + -0.9

Or see this region's nucleotide sequence