Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS06275 and ABIE41_RS06280 are separated by 1 nucleotides ABIE41_RS06280 and ABIE41_RS06285 are separated by 12 nucleotides
ABIE41_RS06275: ABIE41_RS06275 - DUF4147 domain-containing protein, at 1,295,104 to 1,296,378
_RS06275
ABIE41_RS06280: ABIE41_RS06280 - DUF1036 domain-containing protein, at 1,296,380 to 1,296,823
_RS06280
ABIE41_RS06285: ABIE41_RS06285 - pyruvate kinase, at 1,296,836 to 1,298,275
_RS06285
Position (kb) 1296
1297 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1295.759 kb on - strand, within ABIE41_RS06275 at 1295.921 kb on - strand, within ABIE41_RS06275 at 1295.921 kb on - strand, within ABIE41_RS06275 at 1295.921 kb on - strand, within ABIE41_RS06275 at 1296.004 kb on - strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.094 kb on + strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.095 kb on - strand, within ABIE41_RS06275 at 1296.946 kb on + strand at 1296.946 kb on + strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.947 kb on - strand at 1296.955 kb on + strand at 1297.204 kb on + strand, within ABIE41_RS06285 at 1297.204 kb on + strand, within ABIE41_RS06285 at 1297.205 kb on - strand, within ABIE41_RS06285 at 1297.328 kb on - strand, within ABIE41_RS06285 at 1297.636 kb on + strand, within ABIE41_RS06285 at 1297.636 kb on + strand, within ABIE41_RS06285 at 1297.636 kb on + strand, within ABIE41_RS06285 at 1297.637 kb on - strand, within ABIE41_RS06285
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 1,295,759 - ABIE41_RS06275 0.51 +2.1 1,295,921 - ABIE41_RS06275 0.64 +1.1 1,295,921 - ABIE41_RS06275 0.64 +0.2 1,295,921 - ABIE41_RS06275 0.64 +0.6 1,296,004 - ABIE41_RS06275 0.71 +1.6 1,296,094 + ABIE41_RS06275 0.78 -0.6 1,296,094 + ABIE41_RS06275 0.78 -1.8 1,296,094 + ABIE41_RS06275 0.78 -1.1 1,296,094 + ABIE41_RS06275 0.78 +0.4 1,296,094 + ABIE41_RS06275 0.78 +0.1 1,296,094 + ABIE41_RS06275 0.78 -0.1 1,296,094 + ABIE41_RS06275 0.78 +0.7 1,296,094 + ABIE41_RS06275 0.78 -0.4 1,296,094 + ABIE41_RS06275 0.78 +0.2 1,296,094 + ABIE41_RS06275 0.78 +0.2 1,296,095 - ABIE41_RS06275 0.78 +1.6 1,296,095 - ABIE41_RS06275 0.78 +0.4 1,296,095 - ABIE41_RS06275 0.78 -0.3 1,296,095 - ABIE41_RS06275 0.78 +1.6 1,296,095 - ABIE41_RS06275 0.78 +0.5 1,296,095 - ABIE41_RS06275 0.78 +1.6 1,296,095 - ABIE41_RS06275 0.78 -0.7 1,296,095 - ABIE41_RS06275 0.78 -2.1 1,296,095 - ABIE41_RS06275 0.78 -0.1 1,296,946 + -0.8 1,296,946 + -1.5 1,296,947 - -2.0 1,296,947 - -0.6 1,296,947 - -0.1 1,296,947 - -1.8 1,296,947 - -1.6 1,296,947 - -0.3 1,296,947 - -1.2 1,296,947 - -1.1 1,296,955 + -1.6 1,297,204 + ABIE41_RS06285 0.26 -0.5 1,297,204 + ABIE41_RS06285 0.26 -1.6 1,297,205 - ABIE41_RS06285 0.26 -0.1 1,297,328 - ABIE41_RS06285 0.34 -1.3 1,297,636 + ABIE41_RS06285 0.56 -0.4 1,297,636 + ABIE41_RS06285 0.56 -0.0 1,297,636 + ABIE41_RS06285 0.56 +0.1 1,297,637 - ABIE41_RS06285 0.56 -0.7
Or see this region's nucleotide sequence