Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01200 and ABIE41_RS01205 are separated by 164 nucleotides ABIE41_RS01205 and ABIE41_RS01210 are separated by 135 nucleotides ABIE41_RS01210 and ABIE41_RS01215 overlap by 4 nucleotides
ABIE41_RS01200: ABIE41_RS01200 - catalase/peroxidase HPI, at 232,160 to 234,331
_RS01200
ABIE41_RS01205: ABIE41_RS01205 - DUF393 domain-containing protein, at 234,496 to 234,858
_RS01205
ABIE41_RS01210: ABIE41_RS01210 - malto-oligosyltrehalose trehalohydrolase, at 234,994 to 236,787
_RS01210
ABIE41_RS01215: ABIE41_RS01215 - malto-oligosyltrehalose synthase, at 236,784 to 239,615
_RS01215
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 234.137 kb on + strand at 234.137 kb on + strand at 234.137 kb on + strand at 234.137 kb on + strand at 234.138 kb on - strand at 234.138 kb on - strand at 234.239 kb on + strand at 234.239 kb on + strand at 234.239 kb on + strand at 234.240 kb on - strand at 234.240 kb on - strand at 234.240 kb on - strand at 234.240 kb on - strand at 234.300 kb on + strand at 234.300 kb on + strand at 234.301 kb on - strand at 234.790 kb on + strand, within ABIE41_RS01205 at 234.790 kb on + strand, within ABIE41_RS01205 at 234.790 kb on + strand, within ABIE41_RS01205 at 234.790 kb on + strand, within ABIE41_RS01205 at 234.790 kb on + strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.791 kb on - strand, within ABIE41_RS01205 at 234.899 kb on + strand at 234.900 kb on - strand at 235.082 kb on + strand at 235.474 kb on + strand, within ABIE41_RS01210 at 235.474 kb on + strand, within ABIE41_RS01210 at 235.511 kb on - strand, within ABIE41_RS01210 at 235.511 kb on - strand, within ABIE41_RS01210 at 235.511 kb on - strand, within ABIE41_RS01210 at 235.511 kb on - strand, within ABIE41_RS01210 at 235.511 kb on - strand, within ABIE41_RS01210 at 235.589 kb on - strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.627 kb on + strand, within ABIE41_RS01210 at 235.717 kb on + strand, within ABIE41_RS01210 at 235.717 kb on + strand, within ABIE41_RS01210 at 235.738 kb on + strand, within ABIE41_RS01210 at 235.754 kb on - strand, within ABIE41_RS01210 at 235.754 kb on - strand, within ABIE41_RS01210 at 235.755 kb on + strand, within ABIE41_RS01210 at 235.755 kb on + strand, within ABIE41_RS01210 at 235.756 kb on - strand, within ABIE41_RS01210 at 235.756 kb on - strand, within ABIE41_RS01210 at 236.562 kb on - strand, within ABIE41_RS01210 at 236.935 kb on - strand at 236.935 kb on - strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.964 kb on + strand at 236.965 kb on - strand at 236.965 kb on - strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.009 kb on + strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.010 kb on - strand at 237.131 kb on + strand, within ABIE41_RS01215 at 237.131 kb on + strand, within ABIE41_RS01215 at 237.131 kb on + strand, within ABIE41_RS01215 at 237.132 kb on - strand, within ABIE41_RS01215 at 237.132 kb on - strand, within ABIE41_RS01215 at 237.276 kb on + strand, within ABIE41_RS01215 at 237.276 kb on + strand, within ABIE41_RS01215 at 237.385 kb on - strand, within ABIE41_RS01215 at 237.632 kb on - strand, within ABIE41_RS01215 at 237.632 kb on - strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.678 kb on + strand, within ABIE41_RS01215 at 237.679 kb on - strand, within ABIE41_RS01215 at 237.720 kb on + strand, within ABIE41_RS01215 at 237.721 kb on - strand, within ABIE41_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 234,137 + -0.4 234,137 + +0.2 234,137 + +0.9 234,137 + -1.4 234,138 - -0.8 234,138 - -3.1 234,239 + -0.4 234,239 + -3.3 234,239 + -0.7 234,240 - +2.8 234,240 - -1.5 234,240 - -0.5 234,240 - -1.1 234,300 + -0.6 234,300 + -0.3 234,301 - -1.5 234,790 + ABIE41_RS01205 0.81 -1.0 234,790 + ABIE41_RS01205 0.81 +0.5 234,790 + ABIE41_RS01205 0.81 -0.3 234,790 + ABIE41_RS01205 0.81 +0.1 234,790 + ABIE41_RS01205 0.81 +0.5 234,791 - ABIE41_RS01205 0.81 -0.1 234,791 - ABIE41_RS01205 0.81 +0.4 234,791 - ABIE41_RS01205 0.81 -0.9 234,791 - ABIE41_RS01205 0.81 -0.0 234,791 - ABIE41_RS01205 0.81 -0.4 234,791 - ABIE41_RS01205 0.81 +0.0 234,791 - ABIE41_RS01205 0.81 -0.7 234,791 - ABIE41_RS01205 0.81 -0.1 234,899 + +0.9 234,900 - -0.9 235,082 + +2.1 235,474 + ABIE41_RS01210 0.27 +0.4 235,474 + ABIE41_RS01210 0.27 +0.1 235,511 - ABIE41_RS01210 0.29 +0.1 235,511 - ABIE41_RS01210 0.29 -1.7 235,511 - ABIE41_RS01210 0.29 -1.9 235,511 - ABIE41_RS01210 0.29 +0.7 235,511 - ABIE41_RS01210 0.29 +0.1 235,589 - ABIE41_RS01210 0.33 +0.1 235,627 + ABIE41_RS01210 0.35 -0.8 235,627 + ABIE41_RS01210 0.35 +0.0 235,627 + ABIE41_RS01210 0.35 -0.7 235,627 + ABIE41_RS01210 0.35 +1.5 235,627 + ABIE41_RS01210 0.35 -0.6 235,627 + ABIE41_RS01210 0.35 +0.1 235,627 + ABIE41_RS01210 0.35 +0.9 235,627 + ABIE41_RS01210 0.35 -0.2 235,627 + ABIE41_RS01210 0.35 -0.8 235,717 + ABIE41_RS01210 0.40 +1.3 235,717 + ABIE41_RS01210 0.40 +0.4 235,738 + ABIE41_RS01210 0.41 -0.0 235,754 - ABIE41_RS01210 0.42 +0.1 235,754 - ABIE41_RS01210 0.42 -1.5 235,755 + ABIE41_RS01210 0.42 +1.3 235,755 + ABIE41_RS01210 0.42 -1.0 235,756 - ABIE41_RS01210 0.42 +0.3 235,756 - ABIE41_RS01210 0.42 -1.3 236,562 - ABIE41_RS01210 0.87 +1.1 236,935 - -1.9 236,935 - +0.3 236,964 + +0.2 236,964 + -0.0 236,964 + -1.7 236,964 + -1.5 236,964 + +0.0 236,964 + -1.4 236,965 - +0.1 236,965 - -0.3 237,009 + +0.2 237,009 + -0.8 237,009 + +0.0 237,009 + -0.4 237,010 - +0.2 237,010 - -0.3 237,010 - -0.8 237,010 - -1.4 237,010 - +0.3 237,131 + ABIE41_RS01215 0.12 -0.4 237,131 + ABIE41_RS01215 0.12 -1.8 237,131 + ABIE41_RS01215 0.12 -0.3 237,132 - ABIE41_RS01215 0.12 -0.5 237,132 - ABIE41_RS01215 0.12 +0.3 237,276 + ABIE41_RS01215 0.17 -0.1 237,276 + ABIE41_RS01215 0.17 -1.1 237,385 - ABIE41_RS01215 0.21 +0.7 237,632 - ABIE41_RS01215 0.30 +2.7 237,632 - ABIE41_RS01215 0.30 +0.5 237,678 + ABIE41_RS01215 0.32 -0.1 237,678 + ABIE41_RS01215 0.32 -0.5 237,678 + ABIE41_RS01215 0.32 -0.6 237,678 + ABIE41_RS01215 0.32 -1.3 237,679 - ABIE41_RS01215 0.32 -0.2 237,720 + ABIE41_RS01215 0.33 -0.1 237,721 - ABIE41_RS01215 0.33 -0.2
Or see this region's nucleotide sequence