Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22190 and ABIE40_RS22195 are separated by 176 nucleotides ABIE40_RS22195 and ABIE40_RS22200 are separated by 64 nucleotides ABIE40_RS22200 and ABIE40_RS22205 overlap by 4 nucleotides ABIE40_RS22205 and ABIE40_RS22210 overlap by 4 nucleotides
ABIE40_RS22190: ABIE40_RS22190 - HD domain-containing protein, at 574,638 to 575,279
_RS22190
ABIE40_RS22195: ABIE40_RS22195 - VOC family protein, at 575,456 to 575,929
_RS22195
ABIE40_RS22200: ABIE40_RS22200 - type II toxin-antitoxin system ParD family antitoxin, at 575,994 to 576,284
_RS22200
ABIE40_RS22205: ABIE40_RS22205 - type II toxin-antitoxin system RelE/ParE family toxin, at 576,281 to 576,601
_RS22205
ABIE40_RS22210: ABIE40_RS22210 - trans-aconitate 2-methyltransferase, at 576,598 to 577,368
_RS22210
Position (kb) 575
576
577 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 575.334 kb on + strand at 575.335 kb on - strand at 575.359 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.414 kb on + strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.415 kb on - strand at 575.483 kb on + strand at 575.516 kb on + strand, within ABIE40_RS22195 at 575.516 kb on + strand, within ABIE40_RS22195 at 575.517 kb on - strand, within ABIE40_RS22195 at 575.573 kb on + strand, within ABIE40_RS22195 at 575.574 kb on - strand, within ABIE40_RS22195 at 575.574 kb on - strand, within ABIE40_RS22195 at 575.945 kb on + strand at 575.945 kb on + strand at 575.945 kb on + strand at 575.946 kb on - strand at 575.965 kb on + strand at 575.966 kb on - strand at 575.972 kb on + strand at 575.972 kb on + strand at 575.972 kb on + strand at 575.973 kb on - strand at 575.973 kb on - strand at 575.973 kb on - strand at 575.992 kb on + strand at 576.076 kb on - strand, within ABIE40_RS22200 at 576.287 kb on + strand at 576.287 kb on + strand at 576.287 kb on + strand at 576.287 kb on + strand at 576.288 kb on - strand at 576.288 kb on - strand at 576.288 kb on - strand at 576.288 kb on - strand at 576.288 kb on - strand at 576.288 kb on - strand at 576.335 kb on + strand, within ABIE40_RS22205 at 576.335 kb on + strand, within ABIE40_RS22205 at 576.341 kb on + strand, within ABIE40_RS22205 at 576.342 kb on - strand, within ABIE40_RS22205 at 576.342 kb on - strand, within ABIE40_RS22205 at 576.342 kb on - strand, within ABIE40_RS22205 at 576.342 kb on - strand, within ABIE40_RS22205 at 576.380 kb on + strand, within ABIE40_RS22205 at 576.380 kb on + strand, within ABIE40_RS22205 at 576.380 kb on + strand, within ABIE40_RS22205 at 576.380 kb on + strand, within ABIE40_RS22205 at 576.381 kb on - strand, within ABIE40_RS22205 at 576.381 kb on - strand, within ABIE40_RS22205 at 576.381 kb on - strand, within ABIE40_RS22205 at 576.381 kb on - strand, within ABIE40_RS22205 at 576.540 kb on + strand, within ABIE40_RS22205 at 576.541 kb on - strand, within ABIE40_RS22205 at 576.541 kb on - strand, within ABIE40_RS22205 at 576.541 kb on - strand, within ABIE40_RS22205 at 576.599 kb on + strand at 576.599 kb on + strand at 576.599 kb on + strand at 576.600 kb on - strand at 576.600 kb on - strand at 576.692 kb on + strand, within ABIE40_RS22210 at 576.693 kb on - strand, within ABIE40_RS22210 at 576.740 kb on + strand, within ABIE40_RS22210 at 576.741 kb on - strand, within ABIE40_RS22210 at 576.741 kb on - strand, within ABIE40_RS22210 at 576.806 kb on + strand, within ABIE40_RS22210 at 576.807 kb on - strand, within ABIE40_RS22210 at 576.807 kb on - strand, within ABIE40_RS22210 at 576.807 kb on - strand, within ABIE40_RS22210 at 576.807 kb on - strand, within ABIE40_RS22210 at 576.823 kb on - strand, within ABIE40_RS22210 at 576.823 kb on - strand, within ABIE40_RS22210 at 576.858 kb on - strand, within ABIE40_RS22210 at 576.858 kb on - strand, within ABIE40_RS22210 at 576.858 kb on - strand, within ABIE40_RS22210 at 576.860 kb on + strand, within ABIE40_RS22210 at 576.861 kb on - strand, within ABIE40_RS22210 at 576.861 kb on - strand, within ABIE40_RS22210 at 576.861 kb on - strand, within ABIE40_RS22210 at 576.861 kb on - strand, within ABIE40_RS22210 at 576.861 kb on - strand, within ABIE40_RS22210 at 576.976 kb on - strand, within ABIE40_RS22210
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 575,334 + -0.3 575,335 - +0.3 575,359 + +0.3 575,414 + -0.3 575,414 + +1.5 575,414 + +0.5 575,414 + +1.2 575,414 + +1.4 575,414 + +0.7 575,414 + +1.5 575,414 + -2.2 575,415 - -0.4 575,415 - +0.5 575,415 - +0.3 575,415 - -1.3 575,415 - +0.4 575,415 - +0.4 575,415 - -0.6 575,483 + +0.9 575,516 + ABIE40_RS22195 0.13 -0.7 575,516 + ABIE40_RS22195 0.13 +0.0 575,517 - ABIE40_RS22195 0.13 +0.3 575,573 + ABIE40_RS22195 0.25 +0.3 575,574 - ABIE40_RS22195 0.25 -1.0 575,574 - ABIE40_RS22195 0.25 +0.2 575,945 + -0.8 575,945 + -0.3 575,945 + -1.2 575,946 - -0.8 575,965 + -2.2 575,966 - -1.0 575,972 + +0.2 575,972 + -0.7 575,972 + -1.2 575,973 - +0.3 575,973 - -0.9 575,973 - +1.6 575,992 + -0.4 576,076 - ABIE40_RS22200 0.28 +0.1 576,287 + +0.6 576,287 + +0.7 576,287 + +1.1 576,287 + -0.0 576,288 - +0.7 576,288 - +0.2 576,288 - -0.4 576,288 - +0.8 576,288 - -0.4 576,288 - -1.9 576,335 + ABIE40_RS22205 0.17 -0.5 576,335 + ABIE40_RS22205 0.17 -1.5 576,341 + ABIE40_RS22205 0.19 +1.4 576,342 - ABIE40_RS22205 0.19 -0.5 576,342 - ABIE40_RS22205 0.19 -0.8 576,342 - ABIE40_RS22205 0.19 +1.4 576,342 - ABIE40_RS22205 0.19 -2.5 576,380 + ABIE40_RS22205 0.31 -0.7 576,380 + ABIE40_RS22205 0.31 +0.9 576,380 + ABIE40_RS22205 0.31 +0.6 576,380 + ABIE40_RS22205 0.31 +0.2 576,381 - ABIE40_RS22205 0.31 +0.1 576,381 - ABIE40_RS22205 0.31 +1.0 576,381 - ABIE40_RS22205 0.31 -1.5 576,381 - ABIE40_RS22205 0.31 -0.2 576,540 + ABIE40_RS22205 0.81 -1.1 576,541 - ABIE40_RS22205 0.81 -1.3 576,541 - ABIE40_RS22205 0.81 -0.4 576,541 - ABIE40_RS22205 0.81 -0.6 576,599 + -0.8 576,599 + -0.5 576,599 + -0.5 576,600 - -1.0 576,600 - +0.2 576,692 + ABIE40_RS22210 0.12 +0.3 576,693 - ABIE40_RS22210 0.12 -1.5 576,740 + ABIE40_RS22210 0.18 +0.6 576,741 - ABIE40_RS22210 0.19 -1.2 576,741 - ABIE40_RS22210 0.19 +0.7 576,806 + ABIE40_RS22210 0.27 +1.2 576,807 - ABIE40_RS22210 0.27 -1.2 576,807 - ABIE40_RS22210 0.27 -0.4 576,807 - ABIE40_RS22210 0.27 +0.2 576,807 - ABIE40_RS22210 0.27 +3.6 576,823 - ABIE40_RS22210 0.29 -0.1 576,823 - ABIE40_RS22210 0.29 -0.4 576,858 - ABIE40_RS22210 0.34 +0.8 576,858 - ABIE40_RS22210 0.34 -2.2 576,858 - ABIE40_RS22210 0.34 -1.9 576,860 + ABIE40_RS22210 0.34 +1.4 576,861 - ABIE40_RS22210 0.34 -0.7 576,861 - ABIE40_RS22210 0.34 -0.8 576,861 - ABIE40_RS22210 0.34 +0.0 576,861 - ABIE40_RS22210 0.34 -0.2 576,861 - ABIE40_RS22210 0.34 +0.6 576,976 - ABIE40_RS22210 0.49 -0.0
Or see this region's nucleotide sequence