Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20925 and ABIE40_RS20930 are separated by 42 nucleotides ABIE40_RS20930 and ABIE40_RS20935 are separated by 2 nucleotides ABIE40_RS20935 and ABIE40_RS20940 are separated by 2 nucleotides ABIE40_RS20940 and ABIE40_RS20945 are separated by 11 nucleotides
ABIE40_RS20925: ABIE40_RS20925 - ABC transporter substrate-binding protein, at 299,045 to 300,301
_RS20925
ABIE40_RS20930: ABIE40_RS20930 - ABC transporter ATP-binding protein, at 300,344 to 301,060
_RS20930
ABIE40_RS20935: ABIE40_RS20935 - ABC transporter ATP-binding protein, at 301,063 to 301,842
_RS20935
ABIE40_RS20940: ABIE40_RS20940 - branched-chain amino acid ABC transporter permease, at 301,845 to 302,765
_RS20940
ABIE40_RS20945: ABIE40_RS20945 - branched-chain amino acid ABC transporter permease, at 302,777 to 303,967
_RS20945
Position (kb) 301
302 Strain fitness (log2 ratio) -1
0
1
2 at 300.134 kb on - strand, within ABIE40_RS20925 at 300.258 kb on - strand at 300.293 kb on + strand at 300.294 kb on - strand at 300.300 kb on - strand at 300.502 kb on + strand, within ABIE40_RS20930 at 300.502 kb on + strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.503 kb on - strand, within ABIE40_RS20930 at 300.596 kb on + strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 300.597 kb on - strand, within ABIE40_RS20930 at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.046 kb on + strand at 301.047 kb on - strand at 301.047 kb on - strand at 301.047 kb on - strand at 301.112 kb on - strand at 301.112 kb on - strand at 301.400 kb on - strand, within ABIE40_RS20935 at 301.419 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.447 kb on + strand, within ABIE40_RS20935 at 301.448 kb on - strand, within ABIE40_RS20935 at 301.448 kb on - strand, within ABIE40_RS20935 at 301.616 kb on - strand, within ABIE40_RS20935 at 301.780 kb on + strand at 301.780 kb on + strand at 301.864 kb on - strand at 301.864 kb on - strand at 301.864 kb on - strand at 301.920 kb on + strand at 301.920 kb on + strand at 301.921 kb on - strand at 301.921 kb on - strand at 301.923 kb on + strand at 301.923 kb on + strand at 301.923 kb on + strand at 301.924 kb on - strand at 302.013 kb on + strand, within ABIE40_RS20940 at 302.013 kb on + strand, within ABIE40_RS20940 at 302.013 kb on + strand, within ABIE40_RS20940 at 302.100 kb on + strand, within ABIE40_RS20940 at 302.101 kb on - strand, within ABIE40_RS20940 at 302.221 kb on + strand, within ABIE40_RS20940 at 302.277 kb on + strand, within ABIE40_RS20940 at 302.277 kb on + strand, within ABIE40_RS20940 at 302.277 kb on + strand, within ABIE40_RS20940 at 302.277 kb on + strand, within ABIE40_RS20940 at 302.278 kb on - strand, within ABIE40_RS20940 at 302.344 kb on - strand, within ABIE40_RS20940 at 302.472 kb on + strand, within ABIE40_RS20940 at 302.472 kb on + strand, within ABIE40_RS20940 at 302.568 kb on + strand, within ABIE40_RS20940 at 302.569 kb on - strand, within ABIE40_RS20940 at 302.676 kb on + strand at 302.676 kb on + strand at 302.676 kb on + strand at 302.677 kb on - strand at 302.677 kb on - strand at 302.677 kb on - strand at 302.710 kb on - strand at 302.728 kb on + strand at 302.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 300,134 - ABIE40_RS20925 0.87 +1.0 300,258 - -0.1 300,293 + +0.6 300,294 - +0.5 300,300 - +0.1 300,502 + ABIE40_RS20930 0.22 +0.7 300,502 + ABIE40_RS20930 0.22 -0.6 300,503 - ABIE40_RS20930 0.22 +0.5 300,503 - ABIE40_RS20930 0.22 +0.7 300,503 - ABIE40_RS20930 0.22 -1.3 300,503 - ABIE40_RS20930 0.22 +0.5 300,503 - ABIE40_RS20930 0.22 -0.0 300,503 - ABIE40_RS20930 0.22 +0.1 300,596 + ABIE40_RS20930 0.35 +0.2 300,597 - ABIE40_RS20930 0.35 +0.2 300,597 - ABIE40_RS20930 0.35 -0.7 300,597 - ABIE40_RS20930 0.35 +0.6 300,597 - ABIE40_RS20930 0.35 +0.2 301,046 + -1.5 301,046 + -0.6 301,046 + +1.2 301,046 + +0.9 301,046 + -0.2 301,047 - +0.3 301,047 - -0.1 301,047 - +0.2 301,112 - -0.9 301,112 - -0.1 301,400 - ABIE40_RS20935 0.43 +0.5 301,419 + ABIE40_RS20935 0.46 -0.9 301,447 + ABIE40_RS20935 0.49 +0.3 301,447 + ABIE40_RS20935 0.49 -1.0 301,447 + ABIE40_RS20935 0.49 +0.2 301,448 - ABIE40_RS20935 0.49 -1.2 301,448 - ABIE40_RS20935 0.49 -0.9 301,616 - ABIE40_RS20935 0.71 +1.0 301,780 + -0.6 301,780 + -0.3 301,864 - +0.2 301,864 - +1.3 301,864 - -0.0 301,920 + -0.7 301,920 + -0.6 301,921 - -0.3 301,921 - +0.2 301,923 + -0.6 301,923 + +0.0 301,923 + -1.4 301,924 - +1.8 302,013 + ABIE40_RS20940 0.18 -0.6 302,013 + ABIE40_RS20940 0.18 +1.0 302,013 + ABIE40_RS20940 0.18 +1.4 302,100 + ABIE40_RS20940 0.28 +1.3 302,101 - ABIE40_RS20940 0.28 -0.4 302,221 + ABIE40_RS20940 0.41 +0.5 302,277 + ABIE40_RS20940 0.47 +1.3 302,277 + ABIE40_RS20940 0.47 +0.3 302,277 + ABIE40_RS20940 0.47 +0.6 302,277 + ABIE40_RS20940 0.47 -1.1 302,278 - ABIE40_RS20940 0.47 +0.0 302,344 - ABIE40_RS20940 0.54 -0.0 302,472 + ABIE40_RS20940 0.68 +0.4 302,472 + ABIE40_RS20940 0.68 +1.3 302,568 + ABIE40_RS20940 0.79 +0.2 302,569 - ABIE40_RS20940 0.79 -0.8 302,676 + +1.3 302,676 + -0.8 302,676 + +0.3 302,677 - -0.3 302,677 - +0.1 302,677 - +0.0 302,710 - -1.0 302,728 + +1.3 302,764 - -0.1
Or see this region's nucleotide sequence