Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS07025

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS07015 and ABIE40_RS07020 are separated by 55 nucleotidesABIE40_RS07020 and ABIE40_RS07025 are separated by 70 nucleotidesABIE40_RS07025 and ABIE40_RS07030 are separated by 108 nucleotides ABIE40_RS07015: ABIE40_RS07015 - TetR family transcriptional regulator, at 1,371,213 to 1,371,887 _RS07015 ABIE40_RS07020: ABIE40_RS07020 - hypothetical protein, at 1,371,943 to 1,372,263 _RS07020 ABIE40_RS07025: ABIE40_RS07025 - methyltransferase domain-containing protein, at 1,372,334 to 1,373,179 _RS07025 ABIE40_RS07030: ABIE40_RS07030 - tetratricopeptide repeat protein, at 1,373,288 to 1,375,276 _RS07030 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.369 kb on + strand, within ABIE40_RS07015at 1371.370 kb on - strand, within ABIE40_RS07015at 1371.370 kb on - strand, within ABIE40_RS07015at 1371.370 kb on - strand, within ABIE40_RS07015at 1371.370 kb on - strand, within ABIE40_RS07015at 1371.370 kb on - strand, within ABIE40_RS07015at 1371.496 kb on + strand, within ABIE40_RS07015at 1371.496 kb on + strand, within ABIE40_RS07015at 1371.496 kb on + strand, within ABIE40_RS07015at 1371.496 kb on + strand, within ABIE40_RS07015at 1371.496 kb on + strand, within ABIE40_RS07015at 1371.497 kb on - strand, within ABIE40_RS07015at 1371.497 kb on - strand, within ABIE40_RS07015at 1371.497 kb on - strand, within ABIE40_RS07015at 1371.657 kb on + strand, within ABIE40_RS07015at 1371.657 kb on + strand, within ABIE40_RS07015at 1371.657 kb on + strand, within ABIE40_RS07015at 1371.657 kb on + strand, within ABIE40_RS07015at 1371.658 kb on - strand, within ABIE40_RS07015at 1371.658 kb on - strand, within ABIE40_RS07015at 1371.780 kb on + strand, within ABIE40_RS07015at 1371.780 kb on + strand, within ABIE40_RS07015at 1371.781 kb on - strand, within ABIE40_RS07015at 1371.788 kb on + strand, within ABIE40_RS07015at 1371.837 kb on + strandat 1371.837 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.906 kb on + strandat 1371.907 kb on - strandat 1371.907 kb on - strandat 1371.907 kb on - strandat 1372.153 kb on + strand, within ABIE40_RS07020at 1372.154 kb on - strand, within ABIE40_RS07020at 1372.154 kb on - strand, within ABIE40_RS07020at 1372.266 kb on + strandat 1372.266 kb on + strandat 1372.266 kb on + strandat 1372.266 kb on + strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.267 kb on - strandat 1372.335 kb on + strandat 1372.335 kb on + strandat 1372.335 kb on + strandat 1372.336 kb on - strandat 1372.362 kb on + strandat 1372.363 kb on - strandat 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.534 kb on - strand, within ABIE40_RS07025at 1372.809 kb on + strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.923 kb on + strand, within ABIE40_RS07025at 1372.923 kb on + strand, within ABIE40_RS07025at 1372.924 kb on - strand, within ABIE40_RS07025at 1373.135 kb on + strandat 1373.136 kb on - strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.263 kb on - strandat 1373.263 kb on - strandat 1373.264 kb on + strandat 1373.265 kb on - strandat 1373.435 kb on + strandat 1373.846 kb on + strand, within ABIE40_RS07030at 1373.846 kb on + strand, within ABIE40_RS07030at 1373.847 kb on - strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.177 kb on - strand, within ABIE40_RS07030

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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1,371,369 + ABIE40_RS07015 0.23 +1.1
1,371,369 + ABIE40_RS07015 0.23 +2.5
1,371,369 + ABIE40_RS07015 0.23 -2.3
1,371,369 + ABIE40_RS07015 0.23 -1.3
1,371,369 + ABIE40_RS07015 0.23 -0.3
1,371,369 + ABIE40_RS07015 0.23 -1.5
1,371,369 + ABIE40_RS07015 0.23 +1.4
1,371,369 + ABIE40_RS07015 0.23 -0.7
1,371,370 - ABIE40_RS07015 0.23 -0.0
1,371,370 - ABIE40_RS07015 0.23 -1.3
1,371,370 - ABIE40_RS07015 0.23 -1.7
1,371,370 - ABIE40_RS07015 0.23 -1.9
1,371,370 - ABIE40_RS07015 0.23 +0.9
1,371,496 + ABIE40_RS07015 0.42 -0.5
1,371,496 + ABIE40_RS07015 0.42 +1.3
1,371,496 + ABIE40_RS07015 0.42 +0.8
1,371,496 + ABIE40_RS07015 0.42 -0.7
1,371,496 + ABIE40_RS07015 0.42 -0.9
1,371,497 - ABIE40_RS07015 0.42 -0.7
1,371,497 - ABIE40_RS07015 0.42 -0.7
1,371,497 - ABIE40_RS07015 0.42 -1.4
1,371,657 + ABIE40_RS07015 0.66 +0.0
1,371,657 + ABIE40_RS07015 0.66 -0.4
1,371,657 + ABIE40_RS07015 0.66 -0.2
1,371,657 + ABIE40_RS07015 0.66 +1.6
1,371,658 - ABIE40_RS07015 0.66 +0.1
1,371,658 - ABIE40_RS07015 0.66 +0.4
1,371,780 + ABIE40_RS07015 0.84 -0.1
1,371,780 + ABIE40_RS07015 0.84 -0.2
1,371,781 - ABIE40_RS07015 0.84 -0.9
1,371,788 + ABIE40_RS07015 0.85 +0.1
1,371,837 + +0.4
1,371,837 + -0.1
1,371,906 + +0.5
1,371,906 + -0.7
1,371,906 + +0.4
1,371,906 + -1.5
1,371,906 + -0.2
1,371,906 + +0.3
1,371,906 + +0.6
1,371,906 + -0.6
1,371,906 + +0.9
1,371,907 - +0.5
1,371,907 - +0.3
1,371,907 - -1.0
1,372,153 + ABIE40_RS07020 0.65 +3.1
1,372,154 - ABIE40_RS07020 0.66 -0.1
1,372,154 - ABIE40_RS07020 0.66 -0.2
1,372,266 + +1.6
1,372,266 + -0.5
1,372,266 + +0.4
1,372,266 + +0.0
1,372,267 - -0.5
1,372,267 - -0.5
1,372,267 - +0.8
1,372,267 - +0.5
1,372,267 - -0.4
1,372,267 - +1.2
1,372,267 - -0.6
1,372,335 + +0.3
1,372,335 + -0.1
1,372,335 + +0.1
1,372,336 - -0.2
1,372,362 + -0.3
1,372,363 - -0.8
1,372,491 + ABIE40_RS07025 0.19 -0.4
1,372,491 + ABIE40_RS07025 0.19 +0.3
1,372,491 + ABIE40_RS07025 0.19 -0.6
1,372,491 + ABIE40_RS07025 0.19 +0.3
1,372,491 + ABIE40_RS07025 0.19 -0.6
1,372,491 + ABIE40_RS07025 0.19 -0.9
1,372,491 + ABIE40_RS07025 0.19 +2.1
1,372,491 + ABIE40_RS07025 0.19 -1.6
1,372,492 - ABIE40_RS07025 0.19 +0.1
1,372,492 - ABIE40_RS07025 0.19 -0.1
1,372,492 - ABIE40_RS07025 0.19 -0.7
1,372,534 - ABIE40_RS07025 0.24 -0.3
1,372,809 + ABIE40_RS07025 0.56 -1.1
1,372,810 - ABIE40_RS07025 0.56 +0.2
1,372,810 - ABIE40_RS07025 0.56 +1.9
1,372,810 - ABIE40_RS07025 0.56 +1.3
1,372,923 + ABIE40_RS07025 0.70 +0.8
1,372,923 + ABIE40_RS07025 0.70 +0.6
1,372,924 - ABIE40_RS07025 0.70 -0.6
1,373,135 + -0.4
1,373,136 - -1.4
1,373,262 + +2.3
1,373,262 + -0.7
1,373,262 + -0.4
1,373,262 + -0.3
1,373,262 + +0.0
1,373,262 + -0.6
1,373,263 - -2.6
1,373,263 - +0.5
1,373,264 + +0.3
1,373,265 - +0.6
1,373,435 + -2.3
1,373,846 + ABIE40_RS07030 0.28 +0.6
1,373,846 + ABIE40_RS07030 0.28 -0.7
1,373,847 - ABIE40_RS07030 0.28 -0.2
1,373,950 + ABIE40_RS07030 0.33 -0.0
1,373,950 + ABIE40_RS07030 0.33 -0.4
1,373,950 + ABIE40_RS07030 0.33 -0.7
1,373,950 + ABIE40_RS07030 0.33 -1.8
1,373,950 + ABIE40_RS07030 0.33 +0.5
1,373,950 + ABIE40_RS07030 0.33 -0.8
1,373,950 + ABIE40_RS07030 0.33 +0.5
1,373,950 + ABIE40_RS07030 0.33 -0.8
1,373,950 + ABIE40_RS07030 0.33 +0.9
1,373,950 + ABIE40_RS07030 0.33 +3.2
1,373,950 + ABIE40_RS07030 0.33 -1.6
1,373,951 - ABIE40_RS07030 0.33 -1.4
1,373,951 - ABIE40_RS07030 0.33 +0.0
1,373,951 - ABIE40_RS07030 0.33 -0.5
1,373,951 - ABIE40_RS07030 0.33 -0.2
1,373,951 - ABIE40_RS07030 0.33 -1.1
1,373,951 - ABIE40_RS07030 0.33 +0.1
1,374,176 + ABIE40_RS07030 0.45 +0.7
1,374,176 + ABIE40_RS07030 0.45 -0.1
1,374,176 + ABIE40_RS07030 0.45 -0.4
1,374,176 + ABIE40_RS07030 0.45 -3.2
1,374,176 + ABIE40_RS07030 0.45 -0.8
1,374,177 - ABIE40_RS07030 0.45 +0.6

Or see this region's nucleotide sequence