Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS03920

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS03915 and ABIE40_RS03920 are separated by 103 nucleotidesABIE40_RS03920 and ABIE40_RS03925 are separated by 112 nucleotidesABIE40_RS03925 and ABIE40_RS03930 overlap by 4 nucleotidesABIE40_RS03930 and ABIE40_RS03935 are separated by 5 nucleotides ABIE40_RS03915: ABIE40_RS03915 - 1-deoxy-D-xylulose-5-phosphate synthase, at 778,105 to 780,021 _RS03915 ABIE40_RS03920: ABIE40_RS03920 - pirin family protein, at 780,125 to 781,048 _RS03920 ABIE40_RS03925: ABIE40_RS03925 - DUF6516 family protein, at 781,161 to 781,451 _RS03925 ABIE40_RS03930: ABIE40_RS03930 - hypothetical protein, at 781,448 to 781,798 _RS03930 ABIE40_RS03935: ABIE40_RS03935 - exodeoxyribonuclease VII small subunit, at 781,804 to 782,055 _RS03935 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2 3at 780.040 kb on - strandat 780.040 kb on - strandat 780.059 kb on - strandat 780.059 kb on - strandat 780.059 kb on - strandat 780.059 kb on - strandat 780.116 kb on + strandat 780.117 kb on - strandat 780.117 kb on - strandat 780.117 kb on - strandat 780.250 kb on + strand, within ABIE40_RS03920at 780.250 kb on + strand, within ABIE40_RS03920at 780.251 kb on - strand, within ABIE40_RS03920at 780.251 kb on - strand, within ABIE40_RS03920at 780.251 kb on - strand, within ABIE40_RS03920at 780.251 kb on - strand, within ABIE40_RS03920at 780.251 kb on - strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.252 kb on + strand, within ABIE40_RS03920at 780.253 kb on - strand, within ABIE40_RS03920at 780.253 kb on - strand, within ABIE40_RS03920at 780.253 kb on - strand, within ABIE40_RS03920at 780.253 kb on - strand, within ABIE40_RS03920at 780.405 kb on + strand, within ABIE40_RS03920at 780.405 kb on + strand, within ABIE40_RS03920at 780.405 kb on + strand, within ABIE40_RS03920at 780.405 kb on + strand, within ABIE40_RS03920at 780.405 kb on + strand, within ABIE40_RS03920at 780.406 kb on - strand, within ABIE40_RS03920at 780.406 kb on - strand, within ABIE40_RS03920at 780.467 kb on - strand, within ABIE40_RS03920at 780.474 kb on + strand, within ABIE40_RS03920at 780.474 kb on + strand, within ABIE40_RS03920at 780.562 kb on + strand, within ABIE40_RS03920at 780.586 kb on + strand, within ABIE40_RS03920at 780.586 kb on + strand, within ABIE40_RS03920at 780.733 kb on + strand, within ABIE40_RS03920at 780.733 kb on + strand, within ABIE40_RS03920at 780.734 kb on - strand, within ABIE40_RS03920at 780.734 kb on - strand, within ABIE40_RS03920at 780.801 kb on + strand, within ABIE40_RS03920at 780.801 kb on + strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.802 kb on - strand, within ABIE40_RS03920at 780.824 kb on - strand, within ABIE40_RS03920at 780.958 kb on + strandat 781.081 kb on + strandat 781.081 kb on + strandat 781.081 kb on + strandat 781.151 kb on + strandat 781.151 kb on + strandat 781.152 kb on - strandat 781.152 kb on - strandat 781.275 kb on + strand, within ABIE40_RS03925at 781.275 kb on + strand, within ABIE40_RS03925at 781.276 kb on - strand, within ABIE40_RS03925at 781.288 kb on - strand, within ABIE40_RS03925at 781.317 kb on + strand, within ABIE40_RS03925at 781.318 kb on - strand, within ABIE40_RS03925at 781.353 kb on + strand, within ABIE40_RS03925at 781.354 kb on - strand, within ABIE40_RS03925at 781.374 kb on + strand, within ABIE40_RS03925at 781.374 kb on + strand, within ABIE40_RS03925at 781.374 kb on + strand, within ABIE40_RS03925at 781.374 kb on + strand, within ABIE40_RS03925at 781.374 kb on + strand, within ABIE40_RS03925at 781.375 kb on - strand, within ABIE40_RS03925at 781.375 kb on - strand, within ABIE40_RS03925at 781.766 kb on + strandat 781.766 kb on + strandat 781.797 kb on - strandat 781.797 kb on - strandat 781.797 kb on - strandat 781.931 kb on + strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935at 781.932 kb on - strand, within ABIE40_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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780,040 - -0.6
780,040 - +1.0
780,059 - -0.1
780,059 - +0.1
780,059 - -1.7
780,059 - -0.7
780,116 + -0.2
780,117 - +1.6
780,117 - +0.1
780,117 - -0.5
780,250 + ABIE40_RS03920 0.14 -1.9
780,250 + ABIE40_RS03920 0.14 +0.4
780,251 - ABIE40_RS03920 0.14 +2.9
780,251 - ABIE40_RS03920 0.14 -0.4
780,251 - ABIE40_RS03920 0.14 +0.7
780,251 - ABIE40_RS03920 0.14 +0.0
780,251 - ABIE40_RS03920 0.14 +0.4
780,252 + ABIE40_RS03920 0.14 -0.6
780,252 + ABIE40_RS03920 0.14 +0.5
780,252 + ABIE40_RS03920 0.14 +1.9
780,252 + ABIE40_RS03920 0.14 +0.6
780,252 + ABIE40_RS03920 0.14 +0.9
780,252 + ABIE40_RS03920 0.14 +0.1
780,252 + ABIE40_RS03920 0.14 +1.4
780,252 + ABIE40_RS03920 0.14 -0.5
780,253 - ABIE40_RS03920 0.14 +0.7
780,253 - ABIE40_RS03920 0.14 +0.4
780,253 - ABIE40_RS03920 0.14 -0.6
780,253 - ABIE40_RS03920 0.14 +1.2
780,405 + ABIE40_RS03920 0.30 +0.2
780,405 + ABIE40_RS03920 0.30 -0.3
780,405 + ABIE40_RS03920 0.30 +1.0
780,405 + ABIE40_RS03920 0.30 +0.4
780,405 + ABIE40_RS03920 0.30 -0.9
780,406 - ABIE40_RS03920 0.30 +0.7
780,406 - ABIE40_RS03920 0.30 -0.5
780,467 - ABIE40_RS03920 0.37 -0.3
780,474 + ABIE40_RS03920 0.38 +1.4
780,474 + ABIE40_RS03920 0.38 +0.7
780,562 + ABIE40_RS03920 0.47 -0.8
780,586 + ABIE40_RS03920 0.50 -1.1
780,586 + ABIE40_RS03920 0.50 +0.9
780,733 + ABIE40_RS03920 0.66 -0.9
780,733 + ABIE40_RS03920 0.66 -1.6
780,734 - ABIE40_RS03920 0.66 -1.6
780,734 - ABIE40_RS03920 0.66 -0.8
780,801 + ABIE40_RS03920 0.73 +2.4
780,801 + ABIE40_RS03920 0.73 +0.5
780,802 - ABIE40_RS03920 0.73 -0.4
780,802 - ABIE40_RS03920 0.73 -0.4
780,802 - ABIE40_RS03920 0.73 +0.4
780,802 - ABIE40_RS03920 0.73 +0.4
780,802 - ABIE40_RS03920 0.73 -0.2
780,802 - ABIE40_RS03920 0.73 -0.4
780,802 - ABIE40_RS03920 0.73 +0.3
780,824 - ABIE40_RS03920 0.76 -0.3
780,958 + -1.4
781,081 + +0.5
781,081 + +0.3
781,081 + -0.2
781,151 + +0.1
781,151 + -0.3
781,152 - +0.7
781,152 - +0.4
781,275 + ABIE40_RS03925 0.39 +0.0
781,275 + ABIE40_RS03925 0.39 +0.5
781,276 - ABIE40_RS03925 0.40 +0.2
781,288 - ABIE40_RS03925 0.44 +0.5
781,317 + ABIE40_RS03925 0.54 -0.4
781,318 - ABIE40_RS03925 0.54 -1.6
781,353 + ABIE40_RS03925 0.66 -1.5
781,354 - ABIE40_RS03925 0.66 +0.2
781,374 + ABIE40_RS03925 0.73 -1.8
781,374 + ABIE40_RS03925 0.73 +0.2
781,374 + ABIE40_RS03925 0.73 +2.4
781,374 + ABIE40_RS03925 0.73 +0.5
781,374 + ABIE40_RS03925 0.73 +0.9
781,375 - ABIE40_RS03925 0.74 -0.1
781,375 - ABIE40_RS03925 0.74 +0.0
781,766 + +1.2
781,766 + -1.2
781,797 - -1.6
781,797 - +0.2
781,797 - +0.9
781,931 + ABIE40_RS03935 0.50 -1.1
781,932 - ABIE40_RS03935 0.51 -1.1
781,932 - ABIE40_RS03935 0.51 -0.8
781,932 - ABIE40_RS03935 0.51 -0.4
781,932 - ABIE40_RS03935 0.51 -0.4
781,932 - ABIE40_RS03935 0.51 -0.4
781,932 - ABIE40_RS03935 0.51 +0.1

Or see this region's nucleotide sequence