Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02770

Experiment: Carnitine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02765 and ABIE40_RS02770 are separated by 116 nucleotidesABIE40_RS02770 and ABIE40_RS02775 are separated by 109 nucleotides ABIE40_RS02765: ABIE40_RS02765 - TIGR03862 family flavoprotein, at 543,743 to 544,957 _RS02765 ABIE40_RS02770: ABIE40_RS02770 - OsmC family protein, at 545,074 to 545,502 _RS02770 ABIE40_RS02775: ABIE40_RS02775 - DMT family transporter, at 545,612 to 546,505 _RS02775 Position (kb) 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 544.230 kb on + strand, within ABIE40_RS02765at 544.230 kb on + strand, within ABIE40_RS02765at 544.231 kb on - strand, within ABIE40_RS02765at 544.478 kb on + strand, within ABIE40_RS02765at 544.479 kb on - strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.499 kb on + strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.500 kb on - strand, within ABIE40_RS02765at 544.533 kb on + strand, within ABIE40_RS02765at 544.533 kb on + strand, within ABIE40_RS02765at 544.533 kb on + strand, within ABIE40_RS02765at 544.534 kb on - strand, within ABIE40_RS02765at 544.534 kb on - strand, within ABIE40_RS02765at 544.534 kb on - strand, within ABIE40_RS02765at 544.534 kb on - strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.785 kb on + strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.786 kb on - strand, within ABIE40_RS02765at 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.863 kb on + strandat 544.864 kb on - strandat 544.864 kb on - strandat 544.864 kb on - strandat 544.970 kb on - strandat 544.970 kb on - strandat 545.041 kb on - strandat 545.041 kb on - strandat 545.053 kb on + strandat 545.054 kb on - strandat 545.225 kb on - strand, within ABIE40_RS02770at 545.306 kb on + strand, within ABIE40_RS02770at 545.306 kb on + strand, within ABIE40_RS02770at 545.457 kb on + strand, within ABIE40_RS02770at 545.457 kb on + strand, within ABIE40_RS02770at 545.457 kb on + strand, within ABIE40_RS02770at 545.533 kb on + strandat 545.603 kb on + strandat 545.603 kb on + strandat 545.603 kb on + strandat 545.603 kb on + strandat 545.603 kb on + strandat 545.604 kb on - strandat 545.604 kb on - strandat 545.604 kb on - strandat 545.787 kb on + strand, within ABIE40_RS02775at 545.844 kb on - strand, within ABIE40_RS02775at 545.844 kb on - strand, within ABIE40_RS02775at 546.128 kb on + strand, within ABIE40_RS02775at 546.128 kb on + strand, within ABIE40_RS02775at 546.128 kb on + strand, within ABIE40_RS02775at 546.128 kb on + strand, within ABIE40_RS02775at 546.129 kb on - strand, within ABIE40_RS02775at 546.129 kb on - strand, within ABIE40_RS02775at 546.129 kb on - strand, within ABIE40_RS02775at 546.129 kb on - strand, within ABIE40_RS02775at 546.129 kb on - strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.137 kb on + strand, within ABIE40_RS02775at 546.138 kb on - strand, within ABIE40_RS02775at 546.138 kb on - strand, within ABIE40_RS02775at 546.138 kb on - strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.139 kb on + strand, within ABIE40_RS02775at 546.140 kb on - strand, within ABIE40_RS02775at 546.140 kb on - strand, within ABIE40_RS02775at 546.140 kb on - strand, within ABIE40_RS02775at 546.140 kb on - strand, within ABIE40_RS02775at 546.272 kb on + strand, within ABIE40_RS02775at 546.273 kb on - strand, within ABIE40_RS02775at 546.273 kb on - strand, within ABIE40_RS02775at 546.273 kb on - strand, within ABIE40_RS02775at 546.351 kb on - strand, within ABIE40_RS02775at 546.351 kb on - strand, within ABIE40_RS02775

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Per-strain Table

Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C)
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544,230 + ABIE40_RS02765 0.40 -0.0
544,230 + ABIE40_RS02765 0.40 +0.1
544,231 - ABIE40_RS02765 0.40 +1.0
544,478 + ABIE40_RS02765 0.60 -0.0
544,479 - ABIE40_RS02765 0.61 +0.7
544,499 + ABIE40_RS02765 0.62 +1.2
544,499 + ABIE40_RS02765 0.62 +1.1
544,499 + ABIE40_RS02765 0.62 -0.2
544,499 + ABIE40_RS02765 0.62 -0.8
544,499 + ABIE40_RS02765 0.62 -0.0
544,499 + ABIE40_RS02765 0.62 +1.0
544,500 - ABIE40_RS02765 0.62 -1.4
544,500 - ABIE40_RS02765 0.62 -0.6
544,500 - ABIE40_RS02765 0.62 +1.3
544,500 - ABIE40_RS02765 0.62 +0.3
544,500 - ABIE40_RS02765 0.62 -0.6
544,500 - ABIE40_RS02765 0.62 -0.6
544,500 - ABIE40_RS02765 0.62 -2.0
544,533 + ABIE40_RS02765 0.65 -0.2
544,533 + ABIE40_RS02765 0.65 -0.4
544,533 + ABIE40_RS02765 0.65 +0.4
544,534 - ABIE40_RS02765 0.65 -0.7
544,534 - ABIE40_RS02765 0.65 +0.9
544,534 - ABIE40_RS02765 0.65 +0.4
544,534 - ABIE40_RS02765 0.65 +0.0
544,785 + ABIE40_RS02765 0.86 -0.7
544,785 + ABIE40_RS02765 0.86 +1.6
544,785 + ABIE40_RS02765 0.86 +0.4
544,785 + ABIE40_RS02765 0.86 -0.6
544,785 + ABIE40_RS02765 0.86 +0.4
544,785 + ABIE40_RS02765 0.86 +0.8
544,786 - ABIE40_RS02765 0.86 -0.2
544,786 - ABIE40_RS02765 0.86 +0.2
544,786 - ABIE40_RS02765 0.86 +1.4
544,786 - ABIE40_RS02765 0.86 -1.3
544,786 - ABIE40_RS02765 0.86 -0.5
544,786 - ABIE40_RS02765 0.86 -0.3
544,863 + +0.1
544,863 + +2.0
544,863 + -0.5
544,863 + -1.6
544,863 + -1.2
544,863 + +0.1
544,863 + -0.7
544,863 + -0.5
544,864 - -1.9
544,864 - +0.2
544,864 - +0.0
544,970 - -2.0
544,970 - -0.5
545,041 - -0.6
545,041 - +0.8
545,053 + -0.2
545,054 - -0.6
545,225 - ABIE40_RS02770 0.35 -0.2
545,306 + ABIE40_RS02770 0.54 -0.5
545,306 + ABIE40_RS02770 0.54 -1.0
545,457 + ABIE40_RS02770 0.89 -0.3
545,457 + ABIE40_RS02770 0.89 -0.3
545,457 + ABIE40_RS02770 0.89 -2.1
545,533 + +0.3
545,603 + -0.2
545,603 + +1.2
545,603 + -3.4
545,603 + -0.7
545,603 + +0.2
545,604 - -0.5
545,604 - -0.8
545,604 - -0.7
545,787 + ABIE40_RS02775 0.20 -2.0
545,844 - ABIE40_RS02775 0.26 +1.0
545,844 - ABIE40_RS02775 0.26 +0.2
546,128 + ABIE40_RS02775 0.58 +0.1
546,128 + ABIE40_RS02775 0.58 -0.4
546,128 + ABIE40_RS02775 0.58 -1.8
546,128 + ABIE40_RS02775 0.58 +0.2
546,129 - ABIE40_RS02775 0.58 +0.9
546,129 - ABIE40_RS02775 0.58 +0.4
546,129 - ABIE40_RS02775 0.58 -1.0
546,129 - ABIE40_RS02775 0.58 +0.3
546,129 - ABIE40_RS02775 0.58 +0.3
546,137 + ABIE40_RS02775 0.59 +0.4
546,137 + ABIE40_RS02775 0.59 -0.3
546,137 + ABIE40_RS02775 0.59 +0.4
546,137 + ABIE40_RS02775 0.59 -0.2
546,137 + ABIE40_RS02775 0.59 -1.2
546,137 + ABIE40_RS02775 0.59 -1.2
546,138 - ABIE40_RS02775 0.59 +0.4
546,138 - ABIE40_RS02775 0.59 +0.2
546,138 - ABIE40_RS02775 0.59 +0.6
546,139 + ABIE40_RS02775 0.59 -0.3
546,139 + ABIE40_RS02775 0.59 +0.1
546,139 + ABIE40_RS02775 0.59 +1.6
546,139 + ABIE40_RS02775 0.59 -0.2
546,139 + ABIE40_RS02775 0.59 -0.1
546,139 + ABIE40_RS02775 0.59 -0.3
546,139 + ABIE40_RS02775 0.59 -0.7
546,140 - ABIE40_RS02775 0.59 +0.6
546,140 - ABIE40_RS02775 0.59 -0.5
546,140 - ABIE40_RS02775 0.59 +1.6
546,140 - ABIE40_RS02775 0.59 +0.1
546,272 + ABIE40_RS02775 0.74 +0.7
546,273 - ABIE40_RS02775 0.74 -2.0
546,273 - ABIE40_RS02775 0.74 -0.1
546,273 - ABIE40_RS02775 0.74 +0.3
546,351 - ABIE40_RS02775 0.83 +0.1
546,351 - ABIE40_RS02775 0.83 +1.2

Or see this region's nucleotide sequence