Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21530 and ABID97_RS21535 are separated by 8 nucleotides ABID97_RS21535 and ABID97_RS21540 are separated by 24 nucleotides ABID97_RS21540 and ABID97_RS21545 are separated by 152 nucleotides ABID97_RS21545 and ABID97_RS21550 are separated by 50 nucleotides
ABID97_RS21530: ABID97_RS21530 - DSD1 family PLP-dependent enzyme, at 4,458,952 to 4,460,094
_RS21530
ABID97_RS21535: ABID97_RS21535 - RidA family protein, at 4,460,103 to 4,460,510
_RS21535
ABID97_RS21540: ABID97_RS21540 - GlsB/YeaQ/YmgE family stress response membrane protein, at 4,460,535 to 4,460,777
_RS21540
ABID97_RS21545: ABID97_RS21545 - L,D-transpeptidase, at 4,460,930 to 4,461,559
_RS21545
ABID97_RS21550: ABID97_RS21550 - hypothetical protein, at 4,461,610 to 4,461,927
_RS21550
Position (kb) 4460
4461 Strain fitness (log2 ratio) -2
-1
0
1 at 4459.667 kb on - strand, within ABID97_RS21530 at 4459.847 kb on - strand, within ABID97_RS21530 at 4459.888 kb on + strand, within ABID97_RS21530 at 4459.888 kb on + strand, within ABID97_RS21530 at 4460.093 kb on - strand at 4460.355 kb on + strand, within ABID97_RS21535 at 4460.825 kb on - strand at 4460.953 kb on - strand at 4460.985 kb on + strand at 4460.986 kb on - strand at 4461.357 kb on + strand, within ABID97_RS21545 at 4461.559 kb on + strand at 4461.699 kb on - strand, within ABID97_RS21550 at 4461.699 kb on - strand, within ABID97_RS21550
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 4,459,667 - ABID97_RS21530 0.63 -0.7 4,459,847 - ABID97_RS21530 0.78 -0.5 4,459,888 + ABID97_RS21530 0.82 +0.1 4,459,888 + ABID97_RS21530 0.82 -0.2 4,460,093 - +0.3 4,460,355 + ABID97_RS21535 0.62 -0.5 4,460,825 - +0.0 4,460,953 - +0.6 4,460,985 + -0.2 4,460,986 - +0.6 4,461,357 + ABID97_RS21545 0.68 -2.7 4,461,559 + -0.6 4,461,699 - ABID97_RS21550 0.28 +0.4 4,461,699 - ABID97_RS21550 0.28 -0.5
Or see this region's nucleotide sequence