Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16795

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16785 and ABID97_RS16790 overlap by 4 nucleotidesABID97_RS16790 and ABID97_RS16795 overlap by 29 nucleotidesABID97_RS16795 and ABID97_RS16800 overlap by 1 nucleotides ABID97_RS16785: ABID97_RS16785 - transporter, at 3,470,743 to 3,473,142 _RS16785 ABID97_RS16790: ABID97_RS16790 - LolA-related protein, at 3,473,139 to 3,473,777 _RS16790 ABID97_RS16795: ABID97_RS16795 - acyl-CoA synthetase, at 3,473,749 to 3,474,747 _RS16795 ABID97_RS16800: ABID97_RS16800 - AMP-binding protein, at 3,474,747 to 3,476,456 _RS16800 Position (kb) 3473 3474 3475Strain fitness (log2 ratio) -1 0 1 2at 3473.795 kb on + strandat 3473.796 kb on - strandat 3473.796 kb on - strandat 3473.927 kb on + strand, within ABID97_RS16795at 3473.927 kb on + strand, within ABID97_RS16795at 3473.928 kb on - strand, within ABID97_RS16795at 3473.928 kb on - strand, within ABID97_RS16795at 3473.945 kb on + strand, within ABID97_RS16795at 3473.946 kb on - strand, within ABID97_RS16795at 3473.946 kb on - strand, within ABID97_RS16795at 3474.248 kb on + strand, within ABID97_RS16795at 3474.249 kb on - strand, within ABID97_RS16795at 3474.249 kb on - strand, within ABID97_RS16795at 3474.434 kb on + strand, within ABID97_RS16795at 3474.435 kb on - strand, within ABID97_RS16795at 3474.435 kb on - strand, within ABID97_RS16795at 3474.524 kb on + strand, within ABID97_RS16795at 3474.525 kb on - strand, within ABID97_RS16795at 3474.525 kb on - strand, within ABID97_RS16795at 3474.570 kb on - strand, within ABID97_RS16795at 3474.570 kb on - strand, within ABID97_RS16795at 3474.978 kb on + strand, within ABID97_RS16800at 3474.978 kb on + strand, within ABID97_RS16800at 3474.979 kb on - strand, within ABID97_RS16800at 3474.980 kb on + strand, within ABID97_RS16800at 3475.337 kb on - strand, within ABID97_RS16800at 3475.337 kb on - strand, within ABID97_RS16800at 3475.603 kb on + strand, within ABID97_RS16800at 3475.603 kb on + strand, within ABID97_RS16800at 3475.604 kb on - strand, within ABID97_RS16800at 3475.604 kb on - strand, within ABID97_RS16800at 3475.604 kb on - strand, within ABID97_RS16800at 3475.604 kb on - strand, within ABID97_RS16800

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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3,473,795 + +1.8
3,473,796 - +1.6
3,473,796 - +1.9
3,473,927 + ABID97_RS16795 0.18 +1.0
3,473,927 + ABID97_RS16795 0.18 +1.4
3,473,928 - ABID97_RS16795 0.18 +1.5
3,473,928 - ABID97_RS16795 0.18 +0.9
3,473,945 + ABID97_RS16795 0.20 +1.9
3,473,946 - ABID97_RS16795 0.20 +1.3
3,473,946 - ABID97_RS16795 0.20 +1.7
3,474,248 + ABID97_RS16795 0.50 +2.1
3,474,249 - ABID97_RS16795 0.50 +1.5
3,474,249 - ABID97_RS16795 0.50 +1.5
3,474,434 + ABID97_RS16795 0.69 +0.3
3,474,435 - ABID97_RS16795 0.69 +0.0
3,474,435 - ABID97_RS16795 0.69 +1.9
3,474,524 + ABID97_RS16795 0.78 +1.3
3,474,525 - ABID97_RS16795 0.78 +1.8
3,474,525 - ABID97_RS16795 0.78 +1.4
3,474,570 - ABID97_RS16795 0.82 +2.0
3,474,570 - ABID97_RS16795 0.82 +1.2
3,474,978 + ABID97_RS16800 0.14 +2.6
3,474,978 + ABID97_RS16800 0.14 +2.0
3,474,979 - ABID97_RS16800 0.14 +1.4
3,474,980 + ABID97_RS16800 0.14 +1.6
3,475,337 - ABID97_RS16800 0.35 +1.8
3,475,337 - ABID97_RS16800 0.35 +1.5
3,475,603 + ABID97_RS16800 0.50 +0.3
3,475,603 + ABID97_RS16800 0.50 +2.0
3,475,604 - ABID97_RS16800 0.50 +1.8
3,475,604 - ABID97_RS16800 0.50 +1.9
3,475,604 - ABID97_RS16800 0.50 +1.7
3,475,604 - ABID97_RS16800 0.50 +1.8

Or see this region's nucleotide sequence