Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13115 and ABID97_RS13120 are separated by 25 nucleotides ABID97_RS13120 and ABID97_RS13125 are separated by 21 nucleotides ABID97_RS13125 and ABID97_RS13130 are separated by 68 nucleotides
ABID97_RS13115: ABID97_RS13115 - tripartite tricarboxylate transporter substrate binding protein, at 2,731,407 to 2,732,399
_RS13115
ABID97_RS13120: ABID97_RS13120 - carboxymuconolactone decarboxylase family protein, at 2,732,425 to 2,732,823
_RS13120
ABID97_RS13125: ABID97_RS13125 - 3-keto-5-aminohexanoate cleavage protein, at 2,732,845 to 2,733,903
_RS13125
ABID97_RS13130: ABID97_RS13130 - TauD/TfdA family dioxygenase, at 2,733,972 to 2,734,820
_RS13130
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-2
-1
0
1 at 2731.918 kb on + strand, within ABID97_RS13115 at 2731.919 kb on - strand, within ABID97_RS13115 at 2732.068 kb on + strand, within ABID97_RS13115 at 2732.068 kb on + strand, within ABID97_RS13115 at 2732.612 kb on + strand, within ABID97_RS13120 at 2732.612 kb on + strand, within ABID97_RS13120 at 2732.612 kb on + strand, within ABID97_RS13120 at 2732.613 kb on - strand, within ABID97_RS13120 at 2733.206 kb on + strand, within ABID97_RS13125 at 2733.207 kb on - strand, within ABID97_RS13125 at 2733.207 kb on - strand, within ABID97_RS13125 at 2733.269 kb on + strand, within ABID97_RS13125 at 2733.321 kb on - strand, within ABID97_RS13125 at 2733.321 kb on - strand, within ABID97_RS13125 at 2733.414 kb on - strand, within ABID97_RS13125 at 2733.752 kb on + strand, within ABID97_RS13125 at 2733.753 kb on - strand, within ABID97_RS13125 at 2734.045 kb on + strand at 2734.111 kb on + strand, within ABID97_RS13130 at 2734.574 kb on - strand, within ABID97_RS13130
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,731,918 + ABID97_RS13115 0.51 -0.2 2,731,919 - ABID97_RS13115 0.52 -2.6 2,732,068 + ABID97_RS13115 0.67 -1.0 2,732,068 + ABID97_RS13115 0.67 -1.3 2,732,612 + ABID97_RS13120 0.47 -0.1 2,732,612 + ABID97_RS13120 0.47 +0.6 2,732,612 + ABID97_RS13120 0.47 +0.0 2,732,613 - ABID97_RS13120 0.47 +0.2 2,733,206 + ABID97_RS13125 0.34 +0.4 2,733,207 - ABID97_RS13125 0.34 +0.4 2,733,207 - ABID97_RS13125 0.34 +1.6 2,733,269 + ABID97_RS13125 0.40 -0.0 2,733,321 - ABID97_RS13125 0.45 +0.4 2,733,321 - ABID97_RS13125 0.45 +0.4 2,733,414 - ABID97_RS13125 0.54 +0.0 2,733,752 + ABID97_RS13125 0.86 +1.7 2,733,753 - ABID97_RS13125 0.86 -0.3 2,734,045 + +0.2 2,734,111 + ABID97_RS13130 0.16 +0.4 2,734,574 - ABID97_RS13130 0.71 +0.7
Or see this region's nucleotide sequence