Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13125

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13115 and ABID97_RS13120 are separated by 25 nucleotidesABID97_RS13120 and ABID97_RS13125 are separated by 21 nucleotidesABID97_RS13125 and ABID97_RS13130 are separated by 68 nucleotides ABID97_RS13115: ABID97_RS13115 - tripartite tricarboxylate transporter substrate binding protein, at 2,731,407 to 2,732,399 _RS13115 ABID97_RS13120: ABID97_RS13120 - carboxymuconolactone decarboxylase family protein, at 2,732,425 to 2,732,823 _RS13120 ABID97_RS13125: ABID97_RS13125 - 3-keto-5-aminohexanoate cleavage protein, at 2,732,845 to 2,733,903 _RS13125 ABID97_RS13130: ABID97_RS13130 - TauD/TfdA family dioxygenase, at 2,733,972 to 2,734,820 _RS13130 Position (kb) 2732 2733 2734Strain fitness (log2 ratio) -2 -1 0 1at 2731.918 kb on + strand, within ABID97_RS13115at 2731.919 kb on - strand, within ABID97_RS13115at 2732.068 kb on + strand, within ABID97_RS13115at 2732.068 kb on + strand, within ABID97_RS13115at 2732.612 kb on + strand, within ABID97_RS13120at 2732.612 kb on + strand, within ABID97_RS13120at 2732.612 kb on + strand, within ABID97_RS13120at 2732.613 kb on - strand, within ABID97_RS13120at 2733.206 kb on + strand, within ABID97_RS13125at 2733.207 kb on - strand, within ABID97_RS13125at 2733.207 kb on - strand, within ABID97_RS13125at 2733.269 kb on + strand, within ABID97_RS13125at 2733.321 kb on - strand, within ABID97_RS13125at 2733.321 kb on - strand, within ABID97_RS13125at 2733.414 kb on - strand, within ABID97_RS13125at 2733.752 kb on + strand, within ABID97_RS13125at 2733.753 kb on - strand, within ABID97_RS13125at 2734.045 kb on + strandat 2734.111 kb on + strand, within ABID97_RS13130at 2734.574 kb on - strand, within ABID97_RS13130

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,731,918 + ABID97_RS13115 0.51 -0.2
2,731,919 - ABID97_RS13115 0.52 -2.6
2,732,068 + ABID97_RS13115 0.67 -1.0
2,732,068 + ABID97_RS13115 0.67 -1.3
2,732,612 + ABID97_RS13120 0.47 -0.1
2,732,612 + ABID97_RS13120 0.47 +0.6
2,732,612 + ABID97_RS13120 0.47 +0.0
2,732,613 - ABID97_RS13120 0.47 +0.2
2,733,206 + ABID97_RS13125 0.34 +0.4
2,733,207 - ABID97_RS13125 0.34 +0.4
2,733,207 - ABID97_RS13125 0.34 +1.6
2,733,269 + ABID97_RS13125 0.40 -0.0
2,733,321 - ABID97_RS13125 0.45 +0.4
2,733,321 - ABID97_RS13125 0.45 +0.4
2,733,414 - ABID97_RS13125 0.54 +0.0
2,733,752 + ABID97_RS13125 0.86 +1.7
2,733,753 - ABID97_RS13125 0.86 -0.3
2,734,045 + +0.2
2,734,111 + ABID97_RS13130 0.16 +0.4
2,734,574 - ABID97_RS13130 0.71 +0.7

Or see this region's nucleotide sequence