Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05265 and ABID97_RS05270 are separated by 16 nucleotides ABID97_RS05270 and ABID97_RS05275 are separated by 21 nucleotides ABID97_RS05275 and ABID97_RS05280 are separated by 29 nucleotides ABID97_RS05280 and ABID97_RS05285 overlap by 4 nucleotides
ABID97_RS05265: ABID97_RS05265 - low-specificity L-threonine aldolase, at 1,103,538 to 1,104,596
_RS05265
ABID97_RS05270: ABID97_RS05270 - LysE family translocator, at 1,104,613 to 1,105,275
_RS05270
ABID97_RS05275: ABID97_RS05275 - anthranilate phosphoribosyltransferase, at 1,105,297 to 1,106,319
_RS05275
ABID97_RS05280: ABID97_RS05280 - indole-3-glycerol phosphate synthase TrpC, at 1,106,349 to 1,107,149
_RS05280
ABID97_RS05285: ABID97_RS05285 - uracil-DNA glycosylase, at 1,107,146 to 1,107,853
_RS05285
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -1
0
1 at 1104.691 kb on + strand, within ABID97_RS05270 at 1104.691 kb on + strand, within ABID97_RS05270 at 1104.691 kb on + strand, within ABID97_RS05270 at 1104.692 kb on - strand, within ABID97_RS05270 at 1104.844 kb on + strand, within ABID97_RS05270 at 1104.844 kb on + strand, within ABID97_RS05270 at 1104.845 kb on - strand, within ABID97_RS05270 at 1104.845 kb on - strand, within ABID97_RS05270 at 1104.868 kb on + strand, within ABID97_RS05270 at 1104.868 kb on + strand, within ABID97_RS05270 at 1105.960 kb on + strand, within ABID97_RS05275 at 1105.961 kb on - strand, within ABID97_RS05275 at 1106.200 kb on + strand, within ABID97_RS05275 at 1106.201 kb on - strand, within ABID97_RS05275 at 1106.595 kb on + strand, within ABID97_RS05280 at 1106.596 kb on - strand, within ABID97_RS05280 at 1106.596 kb on - strand, within ABID97_RS05280 at 1106.596 kb on - strand, within ABID97_RS05280 at 1106.742 kb on + strand, within ABID97_RS05280 at 1106.752 kb on - strand, within ABID97_RS05280 at 1106.827 kb on - strand, within ABID97_RS05280
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 1,104,691 + ABID97_RS05270 0.12 -0.5 1,104,691 + ABID97_RS05270 0.12 -1.0 1,104,691 + ABID97_RS05270 0.12 -0.2 1,104,692 - ABID97_RS05270 0.12 +0.0 1,104,844 + ABID97_RS05270 0.35 +0.6 1,104,844 + ABID97_RS05270 0.35 +0.2 1,104,845 - ABID97_RS05270 0.35 -0.9 1,104,845 - ABID97_RS05270 0.35 -0.1 1,104,868 + ABID97_RS05270 0.38 -1.4 1,104,868 + ABID97_RS05270 0.38 +0.3 1,105,960 + ABID97_RS05275 0.65 -1.0 1,105,961 - ABID97_RS05275 0.65 -0.5 1,106,200 + ABID97_RS05275 0.88 +0.3 1,106,201 - ABID97_RS05275 0.88 -1.6 1,106,595 + ABID97_RS05280 0.31 -1.2 1,106,596 - ABID97_RS05280 0.31 -0.5 1,106,596 - ABID97_RS05280 0.31 +0.3 1,106,596 - ABID97_RS05280 0.31 -1.6 1,106,742 + ABID97_RS05280 0.49 -1.3 1,106,752 - ABID97_RS05280 0.50 +0.3 1,106,827 - ABID97_RS05280 0.60 +0.3
Or see this region's nucleotide sequence