Strain Fitness in Pseudomonas sp. RS175 around PFR28_04684

Experiment: L-Phenylalanine carbon 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine carbon 5 mM
5,342,538	+		PFR28_04682	0.89	-0.6
5,342,538	+		PFR28_04682	0.89	-1.9
5,342,538	+		PFR28_04682	0.89	-1.8
5,342,539	-		PFR28_04682	0.89	+1.2
5,342,539	-		PFR28_04682	0.89	+0.5
5,342,539	-		PFR28_04682	0.89	+1.0
5,342,539	-		PFR28_04682	0.89	-0.2
5,342,539	-		PFR28_04682	0.89	+1.5
5,342,539	-		PFR28_04682	0.89	-0.1
5,342,610	+				+0.2
5,342,610	+				+0.6
5,342,622	+				-1.1
5,342,622	+				+1.3
5,342,622	+				+1.3
5,342,622	+				-0.1
5,342,622	+				-0.1
5,342,623	-				-1.0
5,342,623	-				-0.4
5,342,623	-				+0.1
5,342,623	-				+0.4
5,342,623	-				+0.6
5,342,623	-				+0.0
5,342,623	-				+0.2
5,342,623	-				-0.1
5,342,623	-				-0.6
5,342,626	+				+0.1
5,342,626	+				+0.5
5,342,626	+				-0.1
5,342,626	+				-0.2
5,342,626	+				+0.1
5,342,626	+				+0.9
5,342,626	+				-1.9
5,342,626	+				+1.2
5,342,627	-				+0.1
5,342,627	-				+0.5
5,342,627	-				+0.7
5,342,627	-				+1.0
5,342,627	-				-0.9
5,342,627	-				-0.7
5,342,627	-				+1.4
5,342,627	-				-0.3
5,342,665	+				-0.1
5,342,665	+				+0.6
5,342,665	+				+0.2
5,342,665	+				+3.0
5,342,665	+				-0.7
5,342,666	-				-0.5
5,342,666	-				-1.3
5,342,666	-				+0.2
5,342,666	-				-0.3
5,342,666	-				+2.7
5,342,668	+				-2.3
5,342,668	+				+0.8
5,342,668	+				-1.6
5,342,668	+				+0.3
5,342,668	+				-1.6
5,342,668	+				-0.1
5,342,668	+				-1.1
5,342,668	+				-0.7
5,342,669	-				+0.5
5,342,669	-				-0.3
5,342,669	-				+0.5
5,342,669	-				-0.7
5,342,669	-				+0.9
5,342,669	-				+2.0
5,342,669	-				+0.2
5,342,669	-				+0.7
5,342,669	-				+0.8
5,342,669	-				+1.2
5,342,672	+				+2.7
5,342,672	+				-2.9
5,342,672	+				+0.1
5,342,672	+				-1.7
5,342,672	+				-0.1
5,342,672	+				-0.6
5,342,672	+				-1.7
5,342,673	-				+0.7
5,342,673	-				+0.9
5,342,673	-				+0.7
5,342,677	+				-0.2
5,342,677	+				+0.5
5,342,677	+				-3.5
5,342,678	-				-1.4
5,342,678	-				+0.7
5,342,678	-				+0.9
5,342,678	-				-0.4
5,342,678	-				+1.0
5,342,678	-				-0.1
5,342,678	-				+1.1
5,342,678	-				-0.2
5,342,678	-				+1.1
5,342,678	-				-2.7
5,342,678	-				-1.5
5,342,719	+		PFR28_04683	0.12	-1.1
5,342,719	+		PFR28_04683	0.12	+0.7
5,342,719	+		PFR28_04683	0.12	+1.7
5,342,719	+		PFR28_04683	0.12	-0.1
5,342,719	+		PFR28_04683	0.12	-0.4
5,342,719	+		PFR28_04683	0.12	-0.5
5,342,720	-		PFR28_04683	0.13	+0.4
5,342,720	-		PFR28_04683	0.13	-0.1
5,342,720	-		PFR28_04683	0.13	-1.2
5,342,776	+		PFR28_04683	0.19	+0.5
5,342,777	-		PFR28_04683	0.19	-0.7
5,342,839	+		PFR28_04683	0.26	-0.1
5,342,840	-		PFR28_04683	0.26	-0.2
5,342,849	+		PFR28_04683	0.27	+0.0
5,342,849	+		PFR28_04683	0.27	-2.4
5,342,850	-		PFR28_04683	0.27	+0.4
5,342,850	-		PFR28_04683	0.27	-1.8
5,342,863	+		PFR28_04683	0.28	+1.1
5,342,863	+		PFR28_04683	0.28	+0.8
5,342,864	-		PFR28_04683	0.29	-1.0
5,342,864	-		PFR28_04683	0.29	+0.5
5,342,864	-		PFR28_04683	0.29	+0.3
5,342,976	+		PFR28_04683	0.41	+0.0
5,342,976	+		PFR28_04683	0.41	-1.7
5,343,103	+		PFR28_04683	0.55	+1.1
5,343,103	+		PFR28_04683	0.55	-0.2
5,343,104	-		PFR28_04683	0.55	-1.0
5,343,263	+		PFR28_04683	0.73	+0.8
5,343,263	+		PFR28_04683	0.73	+1.2
5,343,264	-		PFR28_04683	0.73	+0.3
5,343,264	-		PFR28_04683	0.73	-2.0
5,343,264	-		PFR28_04683	0.73	+0.6
5,343,521	+				-2.7
5,343,527	-				+0.5
5,343,547	+				+0.7
5,343,548	-				-1.4
5,343,616	-		PFR28_04684	0.11	+0.9
5,343,885	+		PFR28_04684	0.36	+0.8
5,343,885	+		PFR28_04684	0.36	-1.3
5,343,885	+		PFR28_04684	0.36	-0.8
5,343,886	-		PFR28_04684	0.36	-0.0
5,343,886	-		PFR28_04684	0.36	+0.5
5,343,886	-		PFR28_04684	0.36	-0.3
5,343,991	-		PFR28_04684	0.46	-0.7
5,344,338	+		PFR28_04684	0.78	+1.0
5,344,339	-		PFR28_04684	0.78	-0.0
5,344,339	-		PFR28_04684	0.78	+2.9
5,344,449	+		PFR28_04684	0.88	-0.2
5,344,500	+				+0.4
5,344,501	-				-0.4
5,344,514	+				-1.1
5,344,514	+				+0.9
5,344,514	+				-1.8
5,344,515	-				-3.1
5,344,657	+		PFR28_04685	0.12	+0.2
5,344,657	+		PFR28_04685	0.12	-1.3
5,344,657	+		PFR28_04685	0.12	-0.5
5,344,795	+		PFR28_04685	0.36	+0.6
5,344,795	+		PFR28_04685	0.36	-1.5
5,344,885	+		PFR28_04685	0.51	+0.6
5,344,886	-		PFR28_04685	0.51	-1.8
5,344,886	-		PFR28_04685	0.51	+0.7
5,344,886	-		PFR28_04685	0.51	-3.8
5,344,962	+		PFR28_04685	0.64	-3.5
5,344,963	-		PFR28_04685	0.64	-0.4
5,345,012	-		PFR28_04685	0.72	-1.9
5,345,047	+		PFR28_04685	0.78	-0.4
5,345,048	-		PFR28_04685	0.78	+0.3
5,345,048	-		PFR28_04685	0.78	-0.0
5,345,048	-		PFR28_04685	0.78	-0.4
5,345,048	-		PFR28_04685	0.78	-0.2
5,345,048	-		PFR28_04685	0.78	+0.4
5,345,194	-				+0.5
5,345,194	-				+1.1
5,345,208	-				-1.1
5,345,335	+		PFR28_04686	0.26	+1.1
5,345,335	+		PFR28_04686	0.26	-1.9
5,345,336	-		PFR28_04686	0.26	+1.2
5,345,336	-		PFR28_04686	0.26	+0.9
5,345,336	-		PFR28_04686	0.26	+1.0
5,345,343	-		PFR28_04686	0.27	-0.3
5,345,465	+		PFR28_04686	0.44	-1.1
5,345,465	+		PFR28_04686	0.44	-2.0
5,345,465	+		PFR28_04686	0.44	+0.3
5,345,466	-		PFR28_04686	0.44	+0.6
5,345,466	-		PFR28_04686	0.44	+1.5
5,345,466	-		PFR28_04686	0.44	-0.1
5,345,466	-		PFR28_04686	0.44	-0.1
5,345,466	-		PFR28_04686	0.44	-1.4
5,345,466	-		PFR28_04686	0.44	-2.0
5,345,466	-		PFR28_04686	0.44	+0.0