Strain Fitness in Serratia liquefaciens MT49 around IAI46_25195

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25185 and IAI46_25190 are separated by 48 nucleotidesIAI46_25190 and IAI46_25195 are separated by 11 nucleotidesIAI46_25195 and IAI46_25200 are separated by 166 nucleotides IAI46_25185: IAI46_25185 - phosphate ABC transporter permease PstA, at 5,378,496 to 5,379,386 _25185 IAI46_25190: IAI46_25190 - phosphate ABC transporter ATP-binding protein PstB, at 5,379,435 to 5,380,211 _25190 IAI46_25195: IAI46_25195 - phosphate signaling complex protein PhoU, at 5,380,223 to 5,380,957 _25195 IAI46_25200: IAI46_25200 - ABC transporter substrate-binding protein, at 5,381,124 to 5,381,963 _25200 Position (kb) 5380 5381Strain fitness (log2 ratio) -2 -1 0 1at 5379.319 kb on + strandat 5379.320 kb on - strandat 5379.337 kb on + strandat 5379.338 kb on - strandat 5379.338 kb on - strandat 5379.344 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.440 kb on + strandat 5379.441 kb on - strandat 5379.492 kb on + strandat 5379.493 kb on - strandat 5379.588 kb on - strand, within IAI46_25190at 5379.615 kb on + strand, within IAI46_25190at 5379.615 kb on + strand, within IAI46_25190at 5379.616 kb on - strand, within IAI46_25190at 5379.616 kb on - strand, within IAI46_25190at 5379.891 kb on + strand, within IAI46_25190at 5379.961 kb on + strand, within IAI46_25190at 5380.007 kb on + strand, within IAI46_25190at 5380.044 kb on + strand, within IAI46_25190at 5380.044 kb on + strand, within IAI46_25190at 5380.045 kb on - strand, within IAI46_25190at 5380.060 kb on + strand, within IAI46_25190at 5380.061 kb on - strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.109 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.113 kb on + strand, within IAI46_25190at 5380.114 kb on - strand, within IAI46_25190at 5380.142 kb on + strandat 5380.188 kb on + strandat 5380.188 kb on + strandat 5380.339 kb on + strand, within IAI46_25195at 5380.724 kb on + strand, within IAI46_25195at 5380.768 kb on + strand, within IAI46_25195at 5380.858 kb on + strand, within IAI46_25195at 5380.894 kb on + strandat 5380.895 kb on - strandat 5380.973 kb on - strandat 5381.003 kb on - strandat 5381.068 kb on + strandat 5381.082 kb on + strandat 5381.082 kb on + strandat 5381.082 kb on + strandat 5381.083 kb on - strandat 5381.083 kb on - strandat 5381.083 kb on - strandat 5381.083 kb on - strandat 5381.083 kb on - strandat 5381.087 kb on + strandat 5381.112 kb on + strandat 5381.112 kb on + strandat 5381.113 kb on - strandat 5381.113 kb on - strandat 5381.152 kb on + strandat 5381.153 kb on - strandat 5381.153 kb on - strandat 5381.227 kb on + strand, within IAI46_25200at 5381.228 kb on - strand, within IAI46_25200at 5381.269 kb on - strand, within IAI46_25200at 5381.308 kb on + strand, within IAI46_25200at 5381.308 kb on + strand, within IAI46_25200at 5381.308 kb on + strand, within IAI46_25200at 5381.308 kb on + strand, within IAI46_25200at 5381.308 kb on + strand, within IAI46_25200at 5381.309 kb on - strand, within IAI46_25200at 5381.309 kb on - strand, within IAI46_25200at 5381.381 kb on + strand, within IAI46_25200at 5381.381 kb on + strand, within IAI46_25200at 5381.381 kb on + strand, within IAI46_25200at 5381.382 kb on - strand, within IAI46_25200at 5381.382 kb on - strand, within IAI46_25200at 5381.423 kb on + strand, within IAI46_25200at 5381.424 kb on - strand, within IAI46_25200at 5381.476 kb on - strand, within IAI46_25200at 5381.582 kb on + strand, within IAI46_25200at 5381.775 kb on + strand, within IAI46_25200at 5381.874 kb on + strand, within IAI46_25200at 5381.875 kb on - strand, within IAI46_25200at 5381.955 kb on - strandat 5381.955 kb on - strandat 5381.955 kb on - strandat 5381.955 kb on - strandat 5381.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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5,379,319 + -1.4
5,379,320 - +0.1
5,379,337 + -0.1
5,379,338 - -0.4
5,379,338 - -0.3
5,379,344 + -0.1
5,379,440 + -1.0
5,379,440 + +0.4
5,379,440 + -0.3
5,379,440 + -0.7
5,379,440 + +0.1
5,379,441 - +1.5
5,379,492 + -0.1
5,379,493 - +0.5
5,379,588 - IAI46_25190 0.20 -1.2
5,379,615 + IAI46_25190 0.23 +0.3
5,379,615 + IAI46_25190 0.23 +1.5
5,379,616 - IAI46_25190 0.23 +0.2
5,379,616 - IAI46_25190 0.23 -1.4
5,379,891 + IAI46_25190 0.59 +0.2
5,379,961 + IAI46_25190 0.68 -0.7
5,380,007 + IAI46_25190 0.74 +0.6
5,380,044 + IAI46_25190 0.78 -1.1
5,380,044 + IAI46_25190 0.78 -0.2
5,380,045 - IAI46_25190 0.79 +0.7
5,380,060 + IAI46_25190 0.80 +0.9
5,380,061 - IAI46_25190 0.81 +0.3
5,380,109 + IAI46_25190 0.87 -1.0
5,380,109 + IAI46_25190 0.87 +0.2
5,380,109 + IAI46_25190 0.87 -0.5
5,380,109 + IAI46_25190 0.87 +0.1
5,380,109 + IAI46_25190 0.87 +0.1
5,380,109 + IAI46_25190 0.87 +0.5
5,380,109 + IAI46_25190 0.87 -1.0
5,380,109 + IAI46_25190 0.87 -2.1
5,380,109 + IAI46_25190 0.87 -0.4
5,380,109 + IAI46_25190 0.87 +0.4
5,380,109 + IAI46_25190 0.87 -0.6
5,380,113 + IAI46_25190 0.87 -0.9
5,380,113 + IAI46_25190 0.87 +0.6
5,380,113 + IAI46_25190 0.87 -0.1
5,380,114 - IAI46_25190 0.87 -0.6
5,380,142 + -0.3
5,380,188 + -0.2
5,380,188 + -0.4
5,380,339 + IAI46_25195 0.16 -0.1
5,380,724 + IAI46_25195 0.68 -0.3
5,380,768 + IAI46_25195 0.74 +0.5
5,380,858 + IAI46_25195 0.86 +0.0
5,380,894 + -0.1
5,380,895 - -0.5
5,380,973 - +0.1
5,381,003 - -0.2
5,381,068 + -1.0
5,381,082 + +0.4
5,381,082 + +0.0
5,381,082 + +0.1
5,381,083 - -1.0
5,381,083 - -0.3
5,381,083 - -0.7
5,381,083 - +0.1
5,381,083 - +0.3
5,381,087 + -0.6
5,381,112 + +0.2
5,381,112 + -0.2
5,381,113 - +0.2
5,381,113 - +0.0
5,381,152 + -0.1
5,381,153 - +0.9
5,381,153 - +0.4
5,381,227 + IAI46_25200 0.12 -0.3
5,381,228 - IAI46_25200 0.12 -0.4
5,381,269 - IAI46_25200 0.17 +0.3
5,381,308 + IAI46_25200 0.22 -0.5
5,381,308 + IAI46_25200 0.22 +0.3
5,381,308 + IAI46_25200 0.22 +0.7
5,381,308 + IAI46_25200 0.22 -0.4
5,381,308 + IAI46_25200 0.22 +1.0
5,381,309 - IAI46_25200 0.22 +0.4
5,381,309 - IAI46_25200 0.22 -0.2
5,381,381 + IAI46_25200 0.31 +0.1
5,381,381 + IAI46_25200 0.31 -0.6
5,381,381 + IAI46_25200 0.31 -0.3
5,381,382 - IAI46_25200 0.31 +0.1
5,381,382 - IAI46_25200 0.31 +0.2
5,381,423 + IAI46_25200 0.36 +0.1
5,381,424 - IAI46_25200 0.36 +0.7
5,381,476 - IAI46_25200 0.42 +0.3
5,381,582 + IAI46_25200 0.55 -1.6
5,381,775 + IAI46_25200 0.78 +1.0
5,381,874 + IAI46_25200 0.89 +0.6
5,381,875 - IAI46_25200 0.89 -0.5
5,381,955 - -0.3
5,381,955 - +0.6
5,381,955 - +0.2
5,381,955 - -0.7
5,381,955 - -1.1

Or see this region's nucleotide sequence