Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_25100 and IAI46_25105 are separated by 97 nucleotides IAI46_25105 and IAI46_25110 are separated by 381 nucleotides IAI46_25110 and IAI46_25115 are separated by 137 nucleotides
IAI46_25100: IAI46_25100 - transcriptional regulator AsnC, at 5,360,736 to 5,361,197
_25100
IAI46_25105: IAI46_25105 - FMN-binding protein MioC, at 5,361,295 to 5,361,735
_25105
IAI46_25110: IAI46_25110 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 5,362,117 to 5,364,006
_25110
IAI46_25115: IAI46_25115 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 5,364,144 to 5,364,764
_25115
Position (kb) 5362
5363
5364
5365 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5361.182 kb on + strand at 5361.183 kb on - strand at 5361.183 kb on - strand at 5361.183 kb on - strand at 5361.203 kb on + strand at 5361.204 kb on - strand at 5361.204 kb on - strand at 5361.207 kb on + strand at 5361.207 kb on + strand at 5361.207 kb on + strand at 5361.208 kb on - strand at 5361.208 kb on - strand at 5361.208 kb on - strand at 5361.208 kb on - strand at 5361.210 kb on + strand at 5361.211 kb on - strand at 5361.211 kb on - strand at 5361.211 kb on - strand at 5361.211 kb on - strand at 5361.211 kb on - strand at 5361.212 kb on + strand at 5361.212 kb on + strand at 5361.212 kb on + strand at 5361.213 kb on - strand at 5361.213 kb on - strand at 5361.218 kb on + strand at 5361.219 kb on - strand at 5361.221 kb on + strand at 5361.221 kb on + strand at 5361.221 kb on + strand at 5361.231 kb on + strand at 5361.232 kb on - strand at 5361.254 kb on + strand at 5361.254 kb on + strand at 5361.254 kb on + strand at 5361.255 kb on - strand at 5361.255 kb on - strand at 5361.255 kb on - strand at 5361.306 kb on + strand at 5361.306 kb on + strand at 5361.306 kb on + strand at 5361.307 kb on - strand at 5361.307 kb on - strand at 5361.324 kb on + strand at 5361.324 kb on + strand at 5361.325 kb on - strand at 5361.343 kb on + strand, within IAI46_25105 at 5361.343 kb on + strand, within IAI46_25105 at 5361.344 kb on - strand, within IAI46_25105 at 5361.344 kb on - strand, within IAI46_25105 at 5361.347 kb on + strand, within IAI46_25105 at 5361.348 kb on - strand, within IAI46_25105 at 5361.459 kb on + strand, within IAI46_25105 at 5361.460 kb on - strand, within IAI46_25105 at 5361.460 kb on - strand, within IAI46_25105 at 5361.480 kb on - strand, within IAI46_25105 at 5361.512 kb on + strand, within IAI46_25105 at 5361.513 kb on - strand, within IAI46_25105 at 5361.534 kb on - strand, within IAI46_25105 at 5361.534 kb on - strand, within IAI46_25105 at 5361.568 kb on - strand, within IAI46_25105 at 5361.577 kb on + strand, within IAI46_25105 at 5361.577 kb on + strand, within IAI46_25105 at 5361.578 kb on - strand, within IAI46_25105 at 5361.729 kb on - strand at 5362.012 kb on + strand at 5362.013 kb on - strand at 5362.048 kb on + strand at 5362.058 kb on + strand at 5362.098 kb on + strand at 5362.124 kb on - strand at 5362.215 kb on - strand at 5362.236 kb on + strand at 5362.236 kb on + strand at 5362.421 kb on + strand, within IAI46_25110 at 5362.440 kb on - strand, within IAI46_25110 at 5362.440 kb on - strand, within IAI46_25110 at 5362.572 kb on - strand, within IAI46_25110 at 5362.572 kb on - strand, within IAI46_25110 at 5362.716 kb on + strand, within IAI46_25110 at 5362.716 kb on + strand, within IAI46_25110 at 5362.717 kb on - strand, within IAI46_25110 at 5362.779 kb on + strand, within IAI46_25110 at 5362.780 kb on - strand, within IAI46_25110 at 5362.803 kb on + strand, within IAI46_25110 at 5362.843 kb on + strand, within IAI46_25110 at 5362.843 kb on + strand, within IAI46_25110 at 5362.844 kb on - strand, within IAI46_25110 at 5362.887 kb on + strand, within IAI46_25110 at 5362.887 kb on + strand, within IAI46_25110 at 5362.909 kb on + strand, within IAI46_25110 at 5362.909 kb on + strand, within IAI46_25110 at 5362.909 kb on + strand, within IAI46_25110 at 5362.909 kb on + strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.910 kb on - strand, within IAI46_25110 at 5362.943 kb on - strand, within IAI46_25110 at 5362.987 kb on - strand, within IAI46_25110 at 5363.075 kb on + strand, within IAI46_25110 at 5363.076 kb on - strand, within IAI46_25110 at 5363.296 kb on + strand, within IAI46_25110 at 5363.392 kb on + strand, within IAI46_25110 at 5363.514 kb on + strand, within IAI46_25110 at 5363.768 kb on - strand, within IAI46_25110 at 5363.768 kb on - strand, within IAI46_25110 at 5363.842 kb on + strand at 5363.843 kb on - strand at 5363.896 kb on - strand at 5364.005 kb on - strand at 5364.034 kb on - strand at 5364.073 kb on + strand at 5364.077 kb on + strand at 5364.077 kb on + strand at 5364.078 kb on - strand at 5364.223 kb on - strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.255 kb on + strand, within IAI46_25115 at 5364.256 kb on - strand, within IAI46_25115 at 5364.256 kb on - strand, within IAI46_25115 at 5364.257 kb on + strand, within IAI46_25115 at 5364.295 kb on + strand, within IAI46_25115 at 5364.323 kb on - strand, within IAI46_25115 at 5364.323 kb on - strand, within IAI46_25115 at 5364.358 kb on + strand, within IAI46_25115 at 5364.358 kb on + strand, within IAI46_25115 at 5364.359 kb on - strand, within IAI46_25115 at 5364.449 kb on - strand, within IAI46_25115 at 5364.502 kb on + strand, within IAI46_25115 at 5364.748 kb on + strand at 5364.749 kb on - strand at 5364.749 kb on - strand at 5364.749 kb on - strand at 5364.752 kb on + strand at 5364.753 kb on - strand at 5364.782 kb on + strand at 5364.783 kb on - strand at 5364.793 kb on + strand at 5364.800 kb on + strand at 5364.801 kb on - strand at 5364.801 kb on - strand at 5364.877 kb on + strand at 5364.888 kb on + strand at 5364.889 kb on - strand at 5364.889 kb on - strand at 5364.937 kb on - strand at 5364.961 kb on + strand at 5364.967 kb on + strand at 5364.968 kb on - strand at 5364.981 kb on - strand at 5364.986 kb on + strand at 5365.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 5,361,182 + +0.1 5,361,183 - -1.8 5,361,183 - +0.3 5,361,183 - -0.5 5,361,203 + +0.7 5,361,204 - +0.5 5,361,204 - -0.2 5,361,207 + -0.1 5,361,207 + -0.5 5,361,207 + -0.2 5,361,208 - +0.2 5,361,208 - -0.4 5,361,208 - -0.8 5,361,208 - +0.8 5,361,210 + -0.1 5,361,211 - +0.5 5,361,211 - -1.8 5,361,211 - -0.4 5,361,211 - -0.4 5,361,211 - -0.1 5,361,212 + +0.3 5,361,212 + +0.2 5,361,212 + -0.9 5,361,213 - -0.8 5,361,213 - -0.3 5,361,218 + -0.5 5,361,219 - -0.7 5,361,221 + +0.8 5,361,221 + -0.3 5,361,221 + +1.9 5,361,231 + +0.7 5,361,232 - -0.2 5,361,254 + +0.5 5,361,254 + +0.1 5,361,254 + +0.7 5,361,255 - -0.7 5,361,255 - -1.0 5,361,255 - -0.6 5,361,306 + +0.2 5,361,306 + -0.5 5,361,306 + +0.2 5,361,307 - -1.8 5,361,307 - +1.1 5,361,324 + -0.1 5,361,324 + +0.6 5,361,325 - -0.2 5,361,343 + IAI46_25105 0.11 -0.3 5,361,343 + IAI46_25105 0.11 -0.3 5,361,344 - IAI46_25105 0.11 -1.2 5,361,344 - IAI46_25105 0.11 +0.0 5,361,347 + IAI46_25105 0.12 +0.2 5,361,348 - IAI46_25105 0.12 -1.1 5,361,459 + IAI46_25105 0.37 -0.4 5,361,460 - IAI46_25105 0.37 +1.3 5,361,460 - IAI46_25105 0.37 -0.7 5,361,480 - IAI46_25105 0.42 +0.3 5,361,512 + IAI46_25105 0.49 -0.2 5,361,513 - IAI46_25105 0.49 -0.3 5,361,534 - IAI46_25105 0.54 -0.1 5,361,534 - IAI46_25105 0.54 +0.5 5,361,568 - IAI46_25105 0.62 -0.3 5,361,577 + IAI46_25105 0.64 -1.1 5,361,577 + IAI46_25105 0.64 +0.4 5,361,578 - IAI46_25105 0.64 -0.4 5,361,729 - +0.5 5,362,012 + +0.4 5,362,013 - +0.5 5,362,048 + +0.0 5,362,058 + +0.6 5,362,098 + +0.2 5,362,124 - +1.2 5,362,215 - +0.0 5,362,236 + -0.2 5,362,236 + -1.0 5,362,421 + IAI46_25110 0.16 +0.1 5,362,440 - IAI46_25110 0.17 +0.1 5,362,440 - IAI46_25110 0.17 -1.3 5,362,572 - IAI46_25110 0.24 -2.1 5,362,572 - IAI46_25110 0.24 -0.1 5,362,716 + IAI46_25110 0.32 -1.7 5,362,716 + IAI46_25110 0.32 -1.2 5,362,717 - IAI46_25110 0.32 +0.1 5,362,779 + IAI46_25110 0.35 +0.1 5,362,780 - IAI46_25110 0.35 -0.6 5,362,803 + IAI46_25110 0.36 -0.5 5,362,843 + IAI46_25110 0.38 -1.0 5,362,843 + IAI46_25110 0.38 -0.1 5,362,844 - IAI46_25110 0.38 +0.1 5,362,887 + IAI46_25110 0.41 +1.5 5,362,887 + IAI46_25110 0.41 -0.1 5,362,909 + IAI46_25110 0.42 +1.2 5,362,909 + IAI46_25110 0.42 +0.5 5,362,909 + IAI46_25110 0.42 -0.9 5,362,909 + IAI46_25110 0.42 -0.5 5,362,910 - IAI46_25110 0.42 -0.1 5,362,910 - IAI46_25110 0.42 +0.1 5,362,910 - IAI46_25110 0.42 +0.1 5,362,910 - IAI46_25110 0.42 -0.9 5,362,910 - IAI46_25110 0.42 +0.5 5,362,910 - IAI46_25110 0.42 -1.4 5,362,943 - IAI46_25110 0.44 -1.1 5,362,987 - IAI46_25110 0.46 -0.1 5,363,075 + IAI46_25110 0.51 +2.0 5,363,076 - IAI46_25110 0.51 +0.3 5,363,296 + IAI46_25110 0.62 -1.3 5,363,392 + IAI46_25110 0.67 -0.1 5,363,514 + IAI46_25110 0.74 +1.2 5,363,768 - IAI46_25110 0.87 -0.3 5,363,768 - IAI46_25110 0.87 -0.5 5,363,842 + +0.5 5,363,843 - -0.1 5,363,896 - -0.9 5,364,005 - +0.4 5,364,034 - -0.3 5,364,073 + +1.2 5,364,077 + +0.1 5,364,077 + +1.3 5,364,078 - +0.4 5,364,223 - IAI46_25115 0.13 +1.5 5,364,255 + IAI46_25115 0.18 +0.9 5,364,255 + IAI46_25115 0.18 +0.2 5,364,255 + IAI46_25115 0.18 +0.2 5,364,255 + IAI46_25115 0.18 +0.6 5,364,255 + IAI46_25115 0.18 +0.4 5,364,255 + IAI46_25115 0.18 +0.3 5,364,255 + IAI46_25115 0.18 +0.6 5,364,255 + IAI46_25115 0.18 +0.0 5,364,255 + IAI46_25115 0.18 -0.0 5,364,256 - IAI46_25115 0.18 +0.6 5,364,256 - IAI46_25115 0.18 -0.4 5,364,257 + IAI46_25115 0.18 -1.0 5,364,295 + IAI46_25115 0.24 -0.3 5,364,323 - IAI46_25115 0.29 +0.3 5,364,323 - IAI46_25115 0.29 +0.2 5,364,358 + IAI46_25115 0.34 -1.1 5,364,358 + IAI46_25115 0.34 -0.1 5,364,359 - IAI46_25115 0.35 +0.4 5,364,449 - IAI46_25115 0.49 +1.6 5,364,502 + IAI46_25115 0.58 -0.6 5,364,748 + -1.0 5,364,749 - +0.1 5,364,749 - +0.0 5,364,749 - +0.2 5,364,752 + -0.4 5,364,753 - +0.5 5,364,782 + -0.4 5,364,783 - -1.2 5,364,793 + -1.2 5,364,800 + -0.2 5,364,801 - +0.3 5,364,801 - +0.7 5,364,877 + +0.0 5,364,888 + +0.5 5,364,889 - +1.0 5,364,889 - +0.6 5,364,937 - -1.4 5,364,961 + -0.7 5,364,967 + +1.3 5,364,968 - +0.6 5,364,981 - +1.0 5,364,986 + -0.5 5,365,005 - -0.9
Or see this region's nucleotide sequence