Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24980 and IAI46_24985 are separated by 533 nucleotides IAI46_24985 and IAI46_24990 are separated by 496 nucleotides
IAI46_24980: IAI46_24980 - YihA family ribosome biogenesis GTP-binding protein, at 5,331,772 to 5,332,422
_24980
IAI46_24985: IAI46_24985 - DNA polymerase I, at 5,332,956 to 5,335,757
_24985
IAI46_24990: IAI46_24990 - acyltransferase, at 5,336,254 to 5,337,144
_24990
Position (kb) 5332
5333
5334
5335
5336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5332.547 kb on - strand at 5332.560 kb on - strand at 5332.655 kb on - strand at 5332.726 kb on - strand at 5332.742 kb on - strand at 5332.742 kb on - strand at 5332.751 kb on + strand at 5332.751 kb on + strand at 5332.751 kb on + strand at 5332.752 kb on - strand at 5332.752 kb on - strand at 5332.752 kb on - strand at 5332.759 kb on + strand at 5332.764 kb on + strand at 5332.765 kb on - strand at 5332.773 kb on - strand at 5332.773 kb on - strand at 5332.773 kb on - strand at 5332.778 kb on + strand at 5332.778 kb on + strand at 5332.778 kb on + strand at 5332.778 kb on + strand at 5332.778 kb on + strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.779 kb on - strand at 5332.822 kb on + strand at 5332.822 kb on + strand at 5332.838 kb on + strand at 5332.838 kb on + strand at 5332.838 kb on + strand at 5332.839 kb on - strand at 5332.839 kb on - strand at 5332.839 kb on - strand at 5332.839 kb on - strand at 5332.839 kb on - strand at 5332.841 kb on + strand at 5332.841 kb on + strand at 5332.841 kb on + strand at 5332.842 kb on - strand at 5332.886 kb on + strand at 5332.886 kb on + strand at 5332.899 kb on + strand at 5332.899 kb on + strand at 5332.914 kb on + strand at 5332.926 kb on + strand at 5332.927 kb on - strand at 5333.104 kb on - strand at 5333.117 kb on + strand at 5333.117 kb on + strand at 5333.204 kb on + strand at 5333.204 kb on + strand at 5333.252 kb on + strand, within IAI46_24985 at 5333.275 kb on + strand, within IAI46_24985 at 5333.275 kb on + strand, within IAI46_24985 at 5333.301 kb on + strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.302 kb on - strand, within IAI46_24985 at 5333.342 kb on + strand, within IAI46_24985 at 5333.342 kb on + strand, within IAI46_24985 at 5333.343 kb on - strand, within IAI46_24985 at 5333.344 kb on + strand, within IAI46_24985 at 5333.345 kb on - strand, within IAI46_24985 at 5333.353 kb on - strand, within IAI46_24985 at 5333.386 kb on + strand, within IAI46_24985 at 5333.387 kb on - strand, within IAI46_24985 at 5333.504 kb on + strand, within IAI46_24985 at 5333.505 kb on - strand, within IAI46_24985 at 5333.578 kb on - strand, within IAI46_24985 at 5333.578 kb on - strand, within IAI46_24985 at 5333.607 kb on - strand, within IAI46_24985 at 5333.699 kb on + strand, within IAI46_24985 at 5333.713 kb on + strand, within IAI46_24985 at 5333.770 kb on + strand, within IAI46_24985 at 5333.771 kb on - strand, within IAI46_24985 at 5333.771 kb on - strand, within IAI46_24985 at 5333.771 kb on - strand, within IAI46_24985 at 5333.777 kb on + strand, within IAI46_24985 at 5333.778 kb on - strand, within IAI46_24985 at 5333.858 kb on - strand, within IAI46_24985 at 5333.858 kb on - strand, within IAI46_24985 at 5333.922 kb on - strand, within IAI46_24985 at 5334.233 kb on + strand, within IAI46_24985 at 5334.234 kb on - strand, within IAI46_24985 at 5334.234 kb on - strand, within IAI46_24985 at 5334.234 kb on - strand, within IAI46_24985 at 5334.234 kb on - strand, within IAI46_24985 at 5334.234 kb on - strand, within IAI46_24985 at 5334.256 kb on + strand, within IAI46_24985 at 5334.257 kb on - strand, within IAI46_24985 at 5334.342 kb on - strand, within IAI46_24985 at 5334.369 kb on - strand, within IAI46_24985 at 5334.407 kb on - strand, within IAI46_24985 at 5334.694 kb on - strand, within IAI46_24985 at 5334.735 kb on - strand, within IAI46_24985 at 5334.757 kb on + strand, within IAI46_24985 at 5334.757 kb on + strand, within IAI46_24985 at 5334.757 kb on + strand, within IAI46_24985 at 5334.758 kb on - strand, within IAI46_24985 at 5334.876 kb on - strand, within IAI46_24985 at 5335.790 kb on - strand at 5335.790 kb on - strand at 5335.800 kb on + strand at 5335.800 kb on + strand at 5335.800 kb on + strand at 5335.824 kb on + strand at 5335.825 kb on - strand at 5335.902 kb on - strand at 5335.920 kb on + strand at 5335.920 kb on + strand at 5335.938 kb on + strand at 5335.939 kb on - strand at 5335.940 kb on + strand at 5336.032 kb on + strand at 5336.033 kb on - strand at 5336.033 kb on - strand at 5336.058 kb on + strand at 5336.083 kb on + strand at 5336.083 kb on + strand at 5336.084 kb on - strand at 5336.084 kb on - strand at 5336.084 kb on - strand at 5336.084 kb on - strand at 5336.084 kb on - strand at 5336.084 kb on - strand at 5336.088 kb on + strand at 5336.089 kb on - strand at 5336.089 kb on - strand at 5336.144 kb on + strand at 5336.177 kb on + strand at 5336.178 kb on - strand at 5336.179 kb on + strand at 5336.180 kb on - strand at 5336.188 kb on + strand at 5336.210 kb on + strand at 5336.210 kb on + strand at 5336.210 kb on + strand at 5336.210 kb on + strand at 5336.210 kb on + strand at 5336.211 kb on - strand at 5336.211 kb on - strand at 5336.220 kb on + strand at 5336.220 kb on + strand at 5336.220 kb on + strand at 5336.220 kb on + strand at 5336.220 kb on + strand at 5336.220 kb on + strand at 5336.221 kb on - strand at 5336.221 kb on - strand at 5336.221 kb on - strand at 5336.221 kb on - strand at 5336.221 kb on - strand at 5336.247 kb on + strand at 5336.247 kb on + strand at 5336.247 kb on + strand at 5336.247 kb on + strand at 5336.247 kb on + strand at 5336.248 kb on - strand at 5336.249 kb on + strand at 5336.249 kb on + strand at 5336.318 kb on + strand at 5336.318 kb on + strand at 5336.318 kb on + strand at 5336.319 kb on - strand at 5336.338 kb on - strand at 5336.356 kb on - strand, within IAI46_24990 at 5336.356 kb on - strand, within IAI46_24990 at 5336.360 kb on + strand, within IAI46_24990 at 5336.361 kb on - strand, within IAI46_24990 at 5336.361 kb on - strand, within IAI46_24990 at 5336.391 kb on + strand, within IAI46_24990 at 5336.391 kb on + strand, within IAI46_24990 at 5336.391 kb on + strand, within IAI46_24990 at 5336.391 kb on + strand, within IAI46_24990 at 5336.391 kb on + strand, within IAI46_24990 at 5336.392 kb on - strand, within IAI46_24990 at 5336.392 kb on - strand, within IAI46_24990 at 5336.412 kb on + strand, within IAI46_24990 at 5336.447 kb on + strand, within IAI46_24990 at 5336.447 kb on + strand, within IAI46_24990 at 5336.447 kb on + strand, within IAI46_24990 at 5336.448 kb on - strand, within IAI46_24990 at 5336.448 kb on - strand, within IAI46_24990 at 5336.448 kb on - strand, within IAI46_24990 at 5336.448 kb on - strand, within IAI46_24990 at 5336.450 kb on + strand, within IAI46_24990 at 5336.450 kb on + strand, within IAI46_24990 at 5336.451 kb on - strand, within IAI46_24990 at 5336.451 kb on - strand, within IAI46_24990 at 5336.454 kb on + strand, within IAI46_24990 at 5336.454 kb on + strand, within IAI46_24990 at 5336.454 kb on + strand, within IAI46_24990 at 5336.455 kb on - strand, within IAI46_24990 at 5336.455 kb on - strand, within IAI46_24990 at 5336.458 kb on - strand, within IAI46_24990 at 5336.480 kb on + strand, within IAI46_24990 at 5336.480 kb on + strand, within IAI46_24990 at 5336.481 kb on - strand, within IAI46_24990 at 5336.481 kb on - strand, within IAI46_24990 at 5336.481 kb on - strand, within IAI46_24990 at 5336.481 kb on - strand, within IAI46_24990 at 5336.530 kb on - strand, within IAI46_24990 at 5336.567 kb on + strand, within IAI46_24990 at 5336.568 kb on - strand, within IAI46_24990 at 5336.568 kb on - strand, within IAI46_24990 at 5336.583 kb on + strand, within IAI46_24990 at 5336.583 kb on + strand, within IAI46_24990 at 5336.584 kb on - strand, within IAI46_24990 at 5336.584 kb on - strand, within IAI46_24990 at 5336.584 kb on - strand, within IAI46_24990 at 5336.595 kb on + strand, within IAI46_24990 at 5336.595 kb on + strand, within IAI46_24990 at 5336.596 kb on - strand, within IAI46_24990 at 5336.599 kb on + strand, within IAI46_24990 at 5336.608 kb on - strand, within IAI46_24990 at 5336.661 kb on + strand, within IAI46_24990 at 5336.693 kb on - strand, within IAI46_24990 at 5336.693 kb on - strand, within IAI46_24990 at 5336.693 kb on - strand, within IAI46_24990 at 5336.693 kb on - strand, within IAI46_24990
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 5,332,547 - +0.0 5,332,560 - -1.3 5,332,655 - +0.2 5,332,726 - -0.2 5,332,742 - +0.6 5,332,742 - +0.3 5,332,751 + -0.6 5,332,751 + -0.4 5,332,751 + -0.6 5,332,752 - -0.7 5,332,752 - -0.3 5,332,752 - -0.7 5,332,759 + -0.7 5,332,764 + -0.5 5,332,765 - -0.5 5,332,773 - -1.9 5,332,773 - -0.8 5,332,773 - -0.2 5,332,778 + +0.1 5,332,778 + +0.1 5,332,778 + -0.5 5,332,778 + +0.9 5,332,778 + +1.7 5,332,779 - -1.1 5,332,779 - -0.2 5,332,779 - +0.2 5,332,779 - +0.6 5,332,779 - +1.3 5,332,779 - -0.0 5,332,779 - +1.0 5,332,779 - -2.5 5,332,822 + +0.3 5,332,822 + +0.2 5,332,838 + -0.1 5,332,838 + +0.2 5,332,838 + -0.1 5,332,839 - +0.3 5,332,839 - +0.6 5,332,839 - -0.0 5,332,839 - -0.3 5,332,839 - +0.2 5,332,841 + +0.5 5,332,841 + +0.2 5,332,841 + -0.8 5,332,842 - +0.7 5,332,886 + -0.5 5,332,886 + -0.1 5,332,899 + -1.1 5,332,899 + +0.1 5,332,914 + -0.0 5,332,926 + +0.5 5,332,927 - -0.2 5,333,104 - -1.0 5,333,117 + -0.1 5,333,117 + +2.0 5,333,204 + +0.5 5,333,204 + -0.6 5,333,252 + IAI46_24985 0.11 -0.5 5,333,275 + IAI46_24985 0.11 +1.5 5,333,275 + IAI46_24985 0.11 +0.6 5,333,301 + IAI46_24985 0.12 -0.1 5,333,302 - IAI46_24985 0.12 -1.1 5,333,302 - IAI46_24985 0.12 +0.1 5,333,302 - IAI46_24985 0.12 -0.5 5,333,302 - IAI46_24985 0.12 +0.5 5,333,302 - IAI46_24985 0.12 -1.7 5,333,302 - IAI46_24985 0.12 +0.6 5,333,342 + IAI46_24985 0.14 -0.7 5,333,342 + IAI46_24985 0.14 -0.9 5,333,343 - IAI46_24985 0.14 +0.5 5,333,344 + IAI46_24985 0.14 -2.2 5,333,345 - IAI46_24985 0.14 -1.3 5,333,353 - IAI46_24985 0.14 -0.5 5,333,386 + IAI46_24985 0.15 -0.3 5,333,387 - IAI46_24985 0.15 -0.7 5,333,504 + IAI46_24985 0.20 -1.2 5,333,505 - IAI46_24985 0.20 -1.3 5,333,578 - IAI46_24985 0.22 +0.5 5,333,578 - IAI46_24985 0.22 -1.2 5,333,607 - IAI46_24985 0.23 -1.9 5,333,699 + IAI46_24985 0.27 -1.1 5,333,713 + IAI46_24985 0.27 -1.2 5,333,770 + IAI46_24985 0.29 -1.7 5,333,771 - IAI46_24985 0.29 -1.7 5,333,771 - IAI46_24985 0.29 -0.7 5,333,771 - IAI46_24985 0.29 -0.7 5,333,777 + IAI46_24985 0.29 +1.1 5,333,778 - IAI46_24985 0.29 -0.3 5,333,858 - IAI46_24985 0.32 -2.3 5,333,858 - IAI46_24985 0.32 +0.1 5,333,922 - IAI46_24985 0.34 +0.5 5,334,233 + IAI46_24985 0.46 +0.5 5,334,234 - IAI46_24985 0.46 +0.7 5,334,234 - IAI46_24985 0.46 +2.8 5,334,234 - IAI46_24985 0.46 +1.1 5,334,234 - IAI46_24985 0.46 +0.1 5,334,234 - IAI46_24985 0.46 +0.2 5,334,256 + IAI46_24985 0.46 -0.9 5,334,257 - IAI46_24985 0.46 -0.2 5,334,342 - IAI46_24985 0.49 -0.1 5,334,369 - IAI46_24985 0.50 +0.3 5,334,407 - IAI46_24985 0.52 -0.9 5,334,694 - IAI46_24985 0.62 +0.8 5,334,735 - IAI46_24985 0.63 -1.1 5,334,757 + IAI46_24985 0.64 -1.0 5,334,757 + IAI46_24985 0.64 -1.1 5,334,757 + IAI46_24985 0.64 -1.2 5,334,758 - IAI46_24985 0.64 -0.5 5,334,876 - IAI46_24985 0.69 +0.8 5,335,790 - +0.2 5,335,790 - -0.3 5,335,800 + -0.7 5,335,800 + -1.5 5,335,800 + +1.1 5,335,824 + -0.2 5,335,825 - -0.6 5,335,902 - -0.1 5,335,920 + +0.6 5,335,920 + +0.5 5,335,938 + +1.2 5,335,939 - +0.7 5,335,940 + +1.1 5,336,032 + -0.2 5,336,033 - -0.7 5,336,033 - -0.3 5,336,058 + -0.4 5,336,083 + +0.1 5,336,083 + +0.2 5,336,084 - +0.1 5,336,084 - -0.1 5,336,084 - +0.6 5,336,084 - -1.6 5,336,084 - -0.5 5,336,084 - +0.8 5,336,088 + -0.4 5,336,089 - -0.5 5,336,089 - -0.8 5,336,144 + +0.5 5,336,177 + -1.3 5,336,178 - -1.1 5,336,179 + +0.5 5,336,180 - -0.7 5,336,188 + -0.9 5,336,210 + -0.2 5,336,210 + +1.0 5,336,210 + +0.1 5,336,210 + +0.8 5,336,210 + -0.5 5,336,211 - +0.5 5,336,211 - -0.9 5,336,220 + +0.1 5,336,220 + +1.1 5,336,220 + +0.4 5,336,220 + -0.1 5,336,220 + -0.2 5,336,220 + +0.5 5,336,221 - +0.9 5,336,221 - -0.8 5,336,221 - -0.5 5,336,221 - -0.3 5,336,221 - -0.3 5,336,247 + +0.3 5,336,247 + -0.3 5,336,247 + +0.6 5,336,247 + +0.6 5,336,247 + -1.0 5,336,248 - +0.0 5,336,249 + +1.5 5,336,249 + +0.5 5,336,318 + +0.1 5,336,318 + -0.8 5,336,318 + +0.2 5,336,319 - +0.4 5,336,338 - -0.7 5,336,356 - IAI46_24990 0.11 +0.3 5,336,356 - IAI46_24990 0.11 +1.9 5,336,360 + IAI46_24990 0.12 +0.1 5,336,361 - IAI46_24990 0.12 -0.9 5,336,361 - IAI46_24990 0.12 -0.0 5,336,391 + IAI46_24990 0.15 +0.0 5,336,391 + IAI46_24990 0.15 +0.1 5,336,391 + IAI46_24990 0.15 +0.2 5,336,391 + IAI46_24990 0.15 -1.1 5,336,391 + IAI46_24990 0.15 +0.1 5,336,392 - IAI46_24990 0.15 +0.6 5,336,392 - IAI46_24990 0.15 +0.1 5,336,412 + IAI46_24990 0.18 +0.2 5,336,447 + IAI46_24990 0.22 -0.3 5,336,447 + IAI46_24990 0.22 -0.8 5,336,447 + IAI46_24990 0.22 -0.4 5,336,448 - IAI46_24990 0.22 +0.0 5,336,448 - IAI46_24990 0.22 -0.3 5,336,448 - IAI46_24990 0.22 +1.0 5,336,448 - IAI46_24990 0.22 +0.2 5,336,450 + IAI46_24990 0.22 -0.1 5,336,450 + IAI46_24990 0.22 +0.4 5,336,451 - IAI46_24990 0.22 +0.7 5,336,451 - IAI46_24990 0.22 -0.8 5,336,454 + IAI46_24990 0.22 +0.1 5,336,454 + IAI46_24990 0.22 +0.2 5,336,454 + IAI46_24990 0.22 -0.5 5,336,455 - IAI46_24990 0.23 -1.5 5,336,455 - IAI46_24990 0.23 +0.1 5,336,458 - IAI46_24990 0.23 +0.8 5,336,480 + IAI46_24990 0.25 +0.0 5,336,480 + IAI46_24990 0.25 +0.1 5,336,481 - IAI46_24990 0.25 -1.1 5,336,481 - IAI46_24990 0.25 -0.5 5,336,481 - IAI46_24990 0.25 +0.1 5,336,481 - IAI46_24990 0.25 +0.3 5,336,530 - IAI46_24990 0.31 +0.2 5,336,567 + IAI46_24990 0.35 +0.6 5,336,568 - IAI46_24990 0.35 -0.5 5,336,568 - IAI46_24990 0.35 +0.8 5,336,583 + IAI46_24990 0.37 +0.1 5,336,583 + IAI46_24990 0.37 +0.1 5,336,584 - IAI46_24990 0.37 +0.6 5,336,584 - IAI46_24990 0.37 +0.3 5,336,584 - IAI46_24990 0.37 -1.3 5,336,595 + IAI46_24990 0.38 -0.2 5,336,595 + IAI46_24990 0.38 +0.8 5,336,596 - IAI46_24990 0.38 -0.5 5,336,599 + IAI46_24990 0.39 -0.1 5,336,608 - IAI46_24990 0.40 +0.0 5,336,661 + IAI46_24990 0.46 -0.1 5,336,693 - IAI46_24990 0.49 +0.4 5,336,693 - IAI46_24990 0.49 +1.3 5,336,693 - IAI46_24990 0.49 -0.7 5,336,693 - IAI46_24990 0.49 +0.1
Or see this region's nucleotide sequence