Strain Fitness in Serratia liquefaciens MT49 around IAI46_24665

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24655 and IAI46_24660 are separated by 148 nucleotidesIAI46_24660 and IAI46_24665 overlap by 4 nucleotidesIAI46_24665 and IAI46_24670 are separated by 63 nucleotidesIAI46_24670 and IAI46_24675 are separated by 62 nucleotides IAI46_24655: IAI46_24655 - cell-envelope stress modulator CpxP, at 5,264,901 to 5,265,395 _24655 IAI46_24660: IAI46_24660 - envelope stress response regulator transcription factor CpxR, at 5,265,544 to 5,266,242 _24660 IAI46_24665: IAI46_24665 - envelope stress sensor histidine kinase CpxA, at 5,266,239 to 5,267,612 _24665 IAI46_24670: IAI46_24670 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 5,267,676 to 5,268,149 _24670 IAI46_24675: IAI46_24675 - CHAD domain-containing protein, at 5,268,212 to 5,268,961 _24675 Position (kb) 5266 5267 5268Strain fitness (log2 ratio) -2 -1 0 1at 5265.320 kb on + strand, within IAI46_24655at 5265.321 kb on - strand, within IAI46_24655at 5265.321 kb on - strand, within IAI46_24655at 5265.345 kb on - strand, within IAI46_24655at 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.352 kb on - strandat 5265.371 kb on + strandat 5265.372 kb on - strandat 5265.375 kb on + strandat 5265.375 kb on + strandat 5265.375 kb on + strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.376 kb on - strandat 5265.390 kb on - strandat 5265.443 kb on + strandat 5265.444 kb on - strandat 5265.444 kb on - strandat 5265.478 kb on - strandat 5265.478 kb on - strandat 5265.487 kb on + strandat 5265.519 kb on - strandat 5265.535 kb on + strandat 5265.542 kb on + strandat 5265.543 kb on - strandat 5265.543 kb on - strandat 5265.727 kb on - strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.832 kb on + strand, within IAI46_24660at 5265.874 kb on - strand, within IAI46_24660at 5265.928 kb on - strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.950 kb on + strand, within IAI46_24660at 5265.951 kb on - strand, within IAI46_24660at 5266.030 kb on - strand, within IAI46_24660at 5266.039 kb on + strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.040 kb on - strand, within IAI46_24660at 5266.058 kb on + strand, within IAI46_24660at 5266.097 kb on + strand, within IAI46_24660at 5266.098 kb on - strand, within IAI46_24660at 5266.098 kb on - strand, within IAI46_24660at 5266.137 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.161 kb on + strand, within IAI46_24660at 5266.162 kb on - strand, within IAI46_24660at 5266.220 kb on - strandat 5266.223 kb on + strandat 5266.223 kb on + strandat 5266.223 kb on + strandat 5266.224 kb on - strandat 5266.224 kb on - strandat 5266.224 kb on - strandat 5266.229 kb on + strandat 5266.229 kb on + strandat 5266.229 kb on + strandat 5266.288 kb on + strandat 5266.288 kb on + strandat 5266.289 kb on - strandat 5266.289 kb on - strandat 5266.289 kb on - strandat 5266.327 kb on + strandat 5266.328 kb on - strandat 5266.328 kb on - strandat 5266.450 kb on + strand, within IAI46_24665at 5266.608 kb on + strand, within IAI46_24665at 5266.609 kb on - strand, within IAI46_24665at 5266.662 kb on + strand, within IAI46_24665at 5266.671 kb on + strand, within IAI46_24665at 5266.671 kb on + strand, within IAI46_24665at 5266.672 kb on - strand, within IAI46_24665at 5266.672 kb on - strand, within IAI46_24665at 5266.672 kb on - strand, within IAI46_24665at 5266.754 kb on + strand, within IAI46_24665at 5266.755 kb on - strand, within IAI46_24665at 5266.755 kb on - strand, within IAI46_24665at 5266.781 kb on - strand, within IAI46_24665at 5266.976 kb on + strand, within IAI46_24665at 5267.114 kb on - strand, within IAI46_24665at 5267.271 kb on + strand, within IAI46_24665at 5267.318 kb on + strand, within IAI46_24665at 5267.319 kb on - strand, within IAI46_24665at 5267.438 kb on - strand, within IAI46_24665at 5267.451 kb on + strand, within IAI46_24665at 5267.512 kb on + strandat 5267.512 kb on + strandat 5267.593 kb on + strandat 5267.613 kb on + strandat 5267.618 kb on + strandat 5267.618 kb on + strandat 5267.618 kb on + strandat 5267.619 kb on - strandat 5267.619 kb on - strandat 5267.619 kb on - strandat 5267.674 kb on - strandat 5267.674 kb on - strandat 5267.693 kb on - strandat 5267.726 kb on + strand, within IAI46_24670at 5267.747 kb on + strand, within IAI46_24670at 5267.798 kb on + strand, within IAI46_24670at 5267.799 kb on - strand, within IAI46_24670at 5267.799 kb on - strand, within IAI46_24670at 5267.826 kb on + strand, within IAI46_24670at 5267.827 kb on - strand, within IAI46_24670at 5267.844 kb on - strand, within IAI46_24670at 5267.863 kb on - strand, within IAI46_24670at 5267.961 kb on + strand, within IAI46_24670at 5267.961 kb on + strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5267.962 kb on - strand, within IAI46_24670at 5268.099 kb on + strand, within IAI46_24670at 5268.124 kb on - strandat 5268.124 kb on - strandat 5268.141 kb on - strandat 5268.147 kb on + strandat 5268.147 kb on + strandat 5268.178 kb on + strandat 5268.179 kb on - strandat 5268.179 kb on - strandat 5268.182 kb on - strandat 5268.182 kb on - strandat 5268.224 kb on - strandat 5268.224 kb on - strandat 5268.232 kb on + strandat 5268.243 kb on + strandat 5268.243 kb on + strandat 5268.244 kb on - strandat 5268.244 kb on - strandat 5268.321 kb on + strand, within IAI46_24675at 5268.321 kb on + strand, within IAI46_24675at 5268.321 kb on + strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.322 kb on - strand, within IAI46_24675at 5268.341 kb on - strand, within IAI46_24675at 5268.364 kb on - strand, within IAI46_24675at 5268.425 kb on - strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.570 kb on + strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.571 kb on - strand, within IAI46_24675at 5268.574 kb on + strand, within IAI46_24675at 5268.575 kb on - strand, within IAI46_24675at 5268.575 kb on - strand, within IAI46_24675

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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5,265,320 + IAI46_24655 0.85 +0.1
5,265,321 - IAI46_24655 0.85 +0.1
5,265,321 - IAI46_24655 0.85 -0.3
5,265,345 - IAI46_24655 0.90 -0.5
5,265,352 - +0.3
5,265,352 - +0.7
5,265,352 - -0.5
5,265,352 - +0.8
5,265,352 - -0.4
5,265,371 + -0.2
5,265,372 - -0.5
5,265,375 + -1.3
5,265,375 + +1.1
5,265,375 + +0.3
5,265,376 - +0.7
5,265,376 - -0.5
5,265,376 - -0.7
5,265,376 - -1.5
5,265,390 - -0.6
5,265,443 + +0.3
5,265,444 - +0.1
5,265,444 - +0.1
5,265,478 - +0.3
5,265,478 - -0.4
5,265,487 + -0.6
5,265,519 - +1.4
5,265,535 + -0.2
5,265,542 + -0.7
5,265,543 - -1.4
5,265,543 - -0.7
5,265,727 - IAI46_24660 0.26 +0.5
5,265,832 + IAI46_24660 0.41 +1.1
5,265,832 + IAI46_24660 0.41 +0.4
5,265,832 + IAI46_24660 0.41 +0.3
5,265,832 + IAI46_24660 0.41 +1.0
5,265,874 - IAI46_24660 0.47 +0.2
5,265,928 - IAI46_24660 0.55 +0.5
5,265,950 + IAI46_24660 0.58 -0.1
5,265,950 + IAI46_24660 0.58 +0.8
5,265,950 + IAI46_24660 0.58 +0.2
5,265,951 - IAI46_24660 0.58 -0.7
5,266,030 - IAI46_24660 0.70 +0.1
5,266,039 + IAI46_24660 0.71 -0.2
5,266,040 - IAI46_24660 0.71 +0.9
5,266,040 - IAI46_24660 0.71 +0.6
5,266,040 - IAI46_24660 0.71 -1.0
5,266,058 + IAI46_24660 0.74 -0.3
5,266,097 + IAI46_24660 0.79 -0.2
5,266,098 - IAI46_24660 0.79 +0.0
5,266,098 - IAI46_24660 0.79 +0.7
5,266,137 + IAI46_24660 0.85 +0.5
5,266,161 + IAI46_24660 0.88 +0.8
5,266,161 + IAI46_24660 0.88 -0.4
5,266,161 + IAI46_24660 0.88 +0.0
5,266,162 - IAI46_24660 0.88 +0.1
5,266,220 - -0.1
5,266,223 + -0.8
5,266,223 + +0.4
5,266,223 + -0.1
5,266,224 - +0.5
5,266,224 - +0.3
5,266,224 - +0.4
5,266,229 + -0.1
5,266,229 + -0.7
5,266,229 + +0.2
5,266,288 + +0.2
5,266,288 + +1.4
5,266,289 - -0.2
5,266,289 - -0.8
5,266,289 - -0.9
5,266,327 + -0.1
5,266,328 - -0.4
5,266,328 - +0.3
5,266,450 + IAI46_24665 0.15 -1.3
5,266,608 + IAI46_24665 0.27 +1.1
5,266,609 - IAI46_24665 0.27 +1.7
5,266,662 + IAI46_24665 0.31 -1.0
5,266,671 + IAI46_24665 0.31 -1.3
5,266,671 + IAI46_24665 0.31 +0.1
5,266,672 - IAI46_24665 0.32 -1.9
5,266,672 - IAI46_24665 0.32 +0.8
5,266,672 - IAI46_24665 0.32 +1.0
5,266,754 + IAI46_24665 0.37 +1.1
5,266,755 - IAI46_24665 0.38 -1.2
5,266,755 - IAI46_24665 0.38 -0.9
5,266,781 - IAI46_24665 0.39 +0.3
5,266,976 + IAI46_24665 0.54 -1.2
5,267,114 - IAI46_24665 0.64 -0.5
5,267,271 + IAI46_24665 0.75 +0.5
5,267,318 + IAI46_24665 0.79 -0.0
5,267,319 - IAI46_24665 0.79 -1.2
5,267,438 - IAI46_24665 0.87 -1.0
5,267,451 + IAI46_24665 0.88 +0.7
5,267,512 + +0.9
5,267,512 + +0.5
5,267,593 + +1.0
5,267,613 + +0.5
5,267,618 + +0.2
5,267,618 + -0.9
5,267,618 + -0.3
5,267,619 - +0.5
5,267,619 - +0.8
5,267,619 - +0.1
5,267,674 - +0.4
5,267,674 - -0.4
5,267,693 - -0.1
5,267,726 + IAI46_24670 0.11 -0.3
5,267,747 + IAI46_24670 0.15 -0.4
5,267,798 + IAI46_24670 0.26 +1.0
5,267,799 - IAI46_24670 0.26 -0.1
5,267,799 - IAI46_24670 0.26 +0.0
5,267,826 + IAI46_24670 0.32 -0.1
5,267,827 - IAI46_24670 0.32 -0.3
5,267,844 - IAI46_24670 0.35 +1.0
5,267,863 - IAI46_24670 0.39 +1.2
5,267,961 + IAI46_24670 0.60 +0.8
5,267,961 + IAI46_24670 0.60 +0.4
5,267,962 - IAI46_24670 0.60 -0.5
5,267,962 - IAI46_24670 0.60 +0.2
5,267,962 - IAI46_24670 0.60 +0.8
5,267,962 - IAI46_24670 0.60 +0.1
5,268,099 + IAI46_24670 0.89 +0.4
5,268,124 - -0.4
5,268,124 - +0.5
5,268,141 - -0.4
5,268,147 + +0.2
5,268,147 + +0.2
5,268,178 + +0.6
5,268,179 - +0.1
5,268,179 - +0.3
5,268,182 - -0.0
5,268,182 - +0.2
5,268,224 - +0.0
5,268,224 - +0.3
5,268,232 + -0.0
5,268,243 + +0.5
5,268,243 + +1.3
5,268,244 - +0.2
5,268,244 - -0.3
5,268,321 + IAI46_24675 0.15 +0.1
5,268,321 + IAI46_24675 0.15 +0.4
5,268,321 + IAI46_24675 0.15 +0.1
5,268,322 - IAI46_24675 0.15 +0.0
5,268,322 - IAI46_24675 0.15 +0.1
5,268,322 - IAI46_24675 0.15 -0.1
5,268,322 - IAI46_24675 0.15 -2.3
5,268,341 - IAI46_24675 0.17 -1.0
5,268,364 - IAI46_24675 0.20 -0.0
5,268,425 - IAI46_24675 0.28 -0.3
5,268,570 + IAI46_24675 0.48 +0.1
5,268,570 + IAI46_24675 0.48 +0.0
5,268,570 + IAI46_24675 0.48 -1.4
5,268,571 - IAI46_24675 0.48 +0.0
5,268,571 - IAI46_24675 0.48 -1.8
5,268,571 - IAI46_24675 0.48 -0.9
5,268,571 - IAI46_24675 0.48 -1.8
5,268,574 + IAI46_24675 0.48 -0.4
5,268,575 - IAI46_24675 0.48 -1.3
5,268,575 - IAI46_24675 0.48 +0.8

Or see this region's nucleotide sequence