Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24505 and IAI46_24510 are separated by 25 nucleotides IAI46_24510 and IAI46_24515 are separated by 29 nucleotides IAI46_24515 and IAI46_24520 are separated by 216 nucleotides
IAI46_24505: IAI46_24505 - argininosuccinate synthase, at 5,230,133 to 5,231,353
_24505
IAI46_24510: IAI46_24510 - acetylglutamate kinase, at 5,231,379 to 5,232,152
_24510
IAI46_24515: IAI46_24515 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,232,182 to 5,233,186
_24515
IAI46_24520: IAI46_24520 - acetylornithine deacetylase, at 5,233,403 to 5,234,548
_24520
Position (kb) 5232
5233
5234 Strain fitness (log2 ratio) -1
0
1
2 at 5231.230 kb on + strand, within IAI46_24505 at 5231.230 kb on + strand, within IAI46_24505 at 5231.265 kb on + strand at 5231.265 kb on + strand at 5231.299 kb on + strand at 5231.300 kb on - strand at 5231.316 kb on + strand at 5231.317 kb on - strand at 5231.369 kb on - strand at 5231.375 kb on - strand at 5231.380 kb on + strand at 5231.381 kb on - strand at 5231.456 kb on + strand at 5231.457 kb on - strand, within IAI46_24510 at 5231.516 kb on + strand, within IAI46_24510 at 5231.516 kb on + strand, within IAI46_24510 at 5231.516 kb on + strand, within IAI46_24510 at 5231.516 kb on + strand, within IAI46_24510 at 5231.517 kb on - strand, within IAI46_24510 at 5231.517 kb on - strand, within IAI46_24510 at 5231.517 kb on - strand, within IAI46_24510 at 5231.517 kb on - strand, within IAI46_24510 at 5231.679 kb on + strand, within IAI46_24510 at 5231.705 kb on + strand, within IAI46_24510 at 5231.706 kb on - strand, within IAI46_24510 at 5231.708 kb on + strand, within IAI46_24510 at 5231.715 kb on - strand, within IAI46_24510 at 5231.753 kb on + strand, within IAI46_24510 at 5231.790 kb on + strand, within IAI46_24510 at 5231.790 kb on + strand, within IAI46_24510 at 5231.790 kb on + strand, within IAI46_24510 at 5231.790 kb on + strand, within IAI46_24510 at 5231.790 kb on + strand, within IAI46_24510 at 5231.791 kb on - strand, within IAI46_24510 at 5231.856 kb on + strand, within IAI46_24510 at 5231.856 kb on + strand, within IAI46_24510 at 5231.864 kb on + strand, within IAI46_24510 at 5231.865 kb on - strand, within IAI46_24510 at 5231.865 kb on - strand, within IAI46_24510 at 5231.930 kb on + strand, within IAI46_24510 at 5231.930 kb on + strand, within IAI46_24510 at 5231.930 kb on + strand, within IAI46_24510 at 5231.931 kb on - strand, within IAI46_24510 at 5232.115 kb on - strand at 5232.115 kb on - strand at 5232.117 kb on + strand at 5232.118 kb on - strand at 5232.118 kb on - strand at 5232.118 kb on - strand at 5232.130 kb on - strand at 5232.137 kb on + strand at 5232.137 kb on + strand at 5232.142 kb on - strand at 5232.160 kb on + strand at 5232.160 kb on + strand at 5232.160 kb on + strand at 5232.161 kb on - strand at 5232.161 kb on - strand at 5232.161 kb on - strand at 5232.161 kb on - strand at 5232.161 kb on - strand at 5232.180 kb on + strand at 5232.183 kb on + strand at 5232.183 kb on + strand at 5232.183 kb on + strand at 5232.184 kb on - strand at 5232.184 kb on - strand at 5232.189 kb on - strand at 5232.397 kb on - strand, within IAI46_24515 at 5232.503 kb on - strand, within IAI46_24515 at 5232.522 kb on - strand, within IAI46_24515 at 5232.522 kb on - strand, within IAI46_24515 at 5232.789 kb on + strand, within IAI46_24515 at 5232.789 kb on + strand, within IAI46_24515 at 5232.790 kb on - strand, within IAI46_24515 at 5232.791 kb on + strand, within IAI46_24515 at 5232.792 kb on - strand, within IAI46_24515 at 5232.792 kb on - strand, within IAI46_24515 at 5232.792 kb on - strand, within IAI46_24515 at 5232.835 kb on - strand, within IAI46_24515 at 5232.837 kb on + strand, within IAI46_24515 at 5232.837 kb on + strand, within IAI46_24515 at 5232.838 kb on - strand, within IAI46_24515 at 5232.838 kb on - strand, within IAI46_24515 at 5232.838 kb on - strand, within IAI46_24515 at 5233.031 kb on + strand, within IAI46_24515 at 5233.124 kb on - strand at 5233.124 kb on - strand at 5233.128 kb on + strand at 5233.129 kb on - strand at 5233.177 kb on + strand at 5233.178 kb on - strand at 5233.293 kb on + strand at 5233.296 kb on - strand at 5233.320 kb on + strand at 5233.320 kb on + strand at 5233.320 kb on + strand at 5233.321 kb on - strand at 5233.321 kb on - strand at 5233.321 kb on - strand at 5233.332 kb on + strand at 5233.332 kb on + strand at 5233.352 kb on + strand at 5233.364 kb on + strand at 5233.371 kb on - strand at 5233.378 kb on + strand at 5233.410 kb on + strand at 5233.411 kb on - strand at 5233.420 kb on + strand at 5233.420 kb on + strand at 5233.421 kb on - strand at 5233.652 kb on + strand, within IAI46_24520 at 5233.652 kb on + strand, within IAI46_24520 at 5233.653 kb on - strand, within IAI46_24520 at 5233.705 kb on + strand, within IAI46_24520 at 5233.706 kb on - strand, within IAI46_24520 at 5233.706 kb on - strand, within IAI46_24520 at 5233.706 kb on - strand, within IAI46_24520 at 5233.712 kb on + strand, within IAI46_24520 at 5233.713 kb on - strand, within IAI46_24520 at 5233.713 kb on - strand, within IAI46_24520 at 5233.753 kb on + strand, within IAI46_24520 at 5233.754 kb on - strand, within IAI46_24520 at 5233.853 kb on + strand, within IAI46_24520 at 5233.854 kb on - strand, within IAI46_24520 at 5234.056 kb on + strand, within IAI46_24520 at 5234.057 kb on - strand, within IAI46_24520 at 5234.057 kb on - strand, within IAI46_24520
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 5,231,230 + IAI46_24505 0.90 +0.7 5,231,230 + IAI46_24505 0.90 +0.6 5,231,265 + +0.9 5,231,265 + -0.3 5,231,299 + +0.1 5,231,300 - +0.1 5,231,316 + +1.0 5,231,317 - -0.5 5,231,369 - -0.8 5,231,375 - -0.4 5,231,380 + -0.7 5,231,381 - +0.2 5,231,456 + +0.3 5,231,457 - IAI46_24510 0.10 +0.4 5,231,516 + IAI46_24510 0.18 -0.3 5,231,516 + IAI46_24510 0.18 -0.6 5,231,516 + IAI46_24510 0.18 -0.1 5,231,516 + IAI46_24510 0.18 +0.5 5,231,517 - IAI46_24510 0.18 +0.7 5,231,517 - IAI46_24510 0.18 +0.3 5,231,517 - IAI46_24510 0.18 -0.4 5,231,517 - IAI46_24510 0.18 +0.0 5,231,679 + IAI46_24510 0.39 +0.4 5,231,705 + IAI46_24510 0.42 +0.7 5,231,706 - IAI46_24510 0.42 +0.8 5,231,708 + IAI46_24510 0.43 +0.5 5,231,715 - IAI46_24510 0.43 -0.2 5,231,753 + IAI46_24510 0.48 +0.5 5,231,790 + IAI46_24510 0.53 +0.6 5,231,790 + IAI46_24510 0.53 -1.4 5,231,790 + IAI46_24510 0.53 +1.7 5,231,790 + IAI46_24510 0.53 -0.2 5,231,790 + IAI46_24510 0.53 +0.6 5,231,791 - IAI46_24510 0.53 +0.5 5,231,856 + IAI46_24510 0.62 +0.4 5,231,856 + IAI46_24510 0.62 +0.4 5,231,864 + IAI46_24510 0.63 -0.1 5,231,865 - IAI46_24510 0.63 -1.5 5,231,865 - IAI46_24510 0.63 +0.4 5,231,930 + IAI46_24510 0.71 -0.3 5,231,930 + IAI46_24510 0.71 -0.0 5,231,930 + IAI46_24510 0.71 -0.4 5,231,931 - IAI46_24510 0.71 +0.2 5,232,115 - +0.3 5,232,115 - -1.0 5,232,117 + +0.7 5,232,118 - -0.1 5,232,118 - +1.2 5,232,118 - +0.2 5,232,130 - +0.5 5,232,137 + +0.2 5,232,137 + -0.2 5,232,142 - +1.3 5,232,160 + -1.7 5,232,160 + +1.0 5,232,160 + -0.8 5,232,161 - -0.2 5,232,161 - +0.8 5,232,161 - +0.1 5,232,161 - +0.2 5,232,161 - +0.9 5,232,180 + +1.0 5,232,183 + +0.2 5,232,183 + +1.0 5,232,183 + -0.2 5,232,184 - +0.0 5,232,184 - +0.0 5,232,189 - +0.4 5,232,397 - IAI46_24515 0.21 +0.0 5,232,503 - IAI46_24515 0.32 -0.9 5,232,522 - IAI46_24515 0.34 +0.4 5,232,522 - IAI46_24515 0.34 +1.1 5,232,789 + IAI46_24515 0.60 +0.1 5,232,789 + IAI46_24515 0.60 -1.6 5,232,790 - IAI46_24515 0.60 -0.4 5,232,791 + IAI46_24515 0.61 +0.9 5,232,792 - IAI46_24515 0.61 -1.5 5,232,792 - IAI46_24515 0.61 +0.6 5,232,792 - IAI46_24515 0.61 -0.6 5,232,835 - IAI46_24515 0.65 +0.5 5,232,837 + IAI46_24515 0.65 -0.4 5,232,837 + IAI46_24515 0.65 -0.8 5,232,838 - IAI46_24515 0.65 -0.3 5,232,838 - IAI46_24515 0.65 -1.2 5,232,838 - IAI46_24515 0.65 +0.8 5,233,031 + IAI46_24515 0.84 -0.0 5,233,124 - -0.2 5,233,124 - +0.1 5,233,128 + +0.8 5,233,129 - +0.7 5,233,177 + -0.5 5,233,178 - -0.4 5,233,293 + +0.3 5,233,296 - +0.6 5,233,320 + -1.4 5,233,320 + -0.2 5,233,320 + -0.7 5,233,321 - +0.3 5,233,321 - -0.5 5,233,321 - +0.3 5,233,332 + +0.3 5,233,332 + +0.0 5,233,352 + +0.0 5,233,364 + -0.3 5,233,371 - -0.0 5,233,378 + -0.4 5,233,410 + -0.3 5,233,411 - +1.0 5,233,420 + +0.2 5,233,420 + +0.2 5,233,421 - +0.2 5,233,652 + IAI46_24520 0.22 -0.1 5,233,652 + IAI46_24520 0.22 -0.0 5,233,653 - IAI46_24520 0.22 +0.4 5,233,705 + IAI46_24520 0.26 +0.5 5,233,706 - IAI46_24520 0.26 +0.4 5,233,706 - IAI46_24520 0.26 -0.7 5,233,706 - IAI46_24520 0.26 +0.3 5,233,712 + IAI46_24520 0.27 +0.4 5,233,713 - IAI46_24520 0.27 +0.7 5,233,713 - IAI46_24520 0.27 +0.4 5,233,753 + IAI46_24520 0.31 +0.1 5,233,754 - IAI46_24520 0.31 +0.9 5,233,853 + IAI46_24520 0.39 -0.1 5,233,854 - IAI46_24520 0.39 +0.4 5,234,056 + IAI46_24520 0.57 -0.0 5,234,057 - IAI46_24520 0.57 +0.1 5,234,057 - IAI46_24520 0.57 +2.2
Or see this region's nucleotide sequence