Strain Fitness in Serratia liquefaciens MT49 around IAI46_23965

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23960 and IAI46_23965 are separated by 365 nucleotidesIAI46_23965 and IAI46_23970 are separated by 131 nucleotides IAI46_23960: IAI46_23960 - gluconate transporter, at 5,101,356 to 5,102,672 _23960 IAI46_23965: IAI46_23965 - gluconate operon transcriptional repressor GntR, at 5,103,038 to 5,104,033 _23965 IAI46_23970: IAI46_23970 - pirin family protein, at 5,104,165 to 5,104,860 _23970 Position (kb) 5103 5104 5105Strain fitness (log2 ratio) -2 -1 0 1at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.047 kb on + strand, within IAI46_23960at 5102.048 kb on - strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.095 kb on + strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.096 kb on - strand, within IAI46_23960at 5102.144 kb on - strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.156 kb on + strand, within IAI46_23960at 5102.157 kb on - strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.260 kb on + strand, within IAI46_23960at 5102.333 kb on - strand, within IAI46_23960at 5102.368 kb on - strand, within IAI46_23960at 5102.386 kb on + strand, within IAI46_23960at 5102.414 kb on + strand, within IAI46_23960at 5102.552 kb on + strandat 5102.553 kb on - strandat 5102.597 kb on + strandat 5102.597 kb on + strandat 5102.597 kb on + strandat 5102.613 kb on - strandat 5102.664 kb on + strandat 5102.672 kb on + strandat 5102.708 kb on + strandat 5102.713 kb on + strandat 5102.721 kb on - strandat 5102.721 kb on - strandat 5102.738 kb on + strandat 5102.762 kb on - strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.775 kb on + strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.776 kb on - strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.799 kb on + strandat 5102.800 kb on - strandat 5102.800 kb on - strandat 5102.821 kb on - strandat 5102.926 kb on + strandat 5102.927 kb on - strandat 5102.928 kb on + strandat 5102.940 kb on - strandat 5102.963 kb on + strandat 5102.964 kb on - strandat 5102.964 kb on - strandat 5103.145 kb on + strand, within IAI46_23965at 5103.145 kb on + strand, within IAI46_23965at 5103.146 kb on - strand, within IAI46_23965at 5103.307 kb on + strand, within IAI46_23965at 5103.308 kb on - strand, within IAI46_23965at 5103.433 kb on - strand, within IAI46_23965at 5103.449 kb on - strand, within IAI46_23965at 5103.449 kb on - strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.454 kb on + strand, within IAI46_23965at 5103.455 kb on - strand, within IAI46_23965at 5103.455 kb on - strand, within IAI46_23965at 5103.480 kb on + strand, within IAI46_23965at 5103.547 kb on + strand, within IAI46_23965at 5103.548 kb on - strand, within IAI46_23965at 5103.644 kb on - strand, within IAI46_23965at 5103.681 kb on + strand, within IAI46_23965at 5103.681 kb on + strand, within IAI46_23965at 5103.681 kb on + strand, within IAI46_23965at 5103.727 kb on - strand, within IAI46_23965at 5103.732 kb on + strand, within IAI46_23965at 5103.732 kb on + strand, within IAI46_23965at 5103.753 kb on + strand, within IAI46_23965at 5103.754 kb on - strand, within IAI46_23965at 5103.888 kb on + strand, within IAI46_23965at 5103.889 kb on - strand, within IAI46_23965at 5103.889 kb on - strand, within IAI46_23965at 5104.105 kb on + strandat 5104.151 kb on + strandat 5104.285 kb on + strand, within IAI46_23970at 5104.286 kb on - strand, within IAI46_23970at 5104.472 kb on + strand, within IAI46_23970at 5104.473 kb on - strand, within IAI46_23970at 5104.517 kb on + strand, within IAI46_23970at 5104.550 kb on + strand, within IAI46_23970at 5104.617 kb on + strand, within IAI46_23970at 5104.642 kb on + strand, within IAI46_23970at 5104.643 kb on - strand, within IAI46_23970at 5104.661 kb on + strand, within IAI46_23970at 5104.661 kb on + strand, within IAI46_23970at 5104.662 kb on - strand, within IAI46_23970at 5104.662 kb on - strand, within IAI46_23970at 5104.662 kb on - strand, within IAI46_23970at 5104.684 kb on - strand, within IAI46_23970at 5104.684 kb on - strand, within IAI46_23970at 5104.758 kb on + strand, within IAI46_23970at 5104.758 kb on + strand, within IAI46_23970at 5104.772 kb on + strand, within IAI46_23970at 5104.773 kb on - strand, within IAI46_23970at 5104.773 kb on - strand, within IAI46_23970at 5104.773 kb on - strand, within IAI46_23970at 5104.775 kb on + strand, within IAI46_23970at 5104.776 kb on - strand, within IAI46_23970at 5104.776 kb on - strand, within IAI46_23970at 5104.803 kb on + strandat 5104.846 kb on - strandat 5104.846 kb on - strandat 5104.846 kb on - strandat 5104.849 kb on + strandat 5104.853 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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5,102,047 + IAI46_23960 0.52 +0.6
5,102,047 + IAI46_23960 0.52 +0.7
5,102,047 + IAI46_23960 0.52 -0.7
5,102,047 + IAI46_23960 0.52 -1.7
5,102,047 + IAI46_23960 0.52 -0.3
5,102,047 + IAI46_23960 0.52 -0.2
5,102,047 + IAI46_23960 0.52 -0.1
5,102,048 - IAI46_23960 0.53 +0.1
5,102,095 + IAI46_23960 0.56 +0.3
5,102,095 + IAI46_23960 0.56 +0.6
5,102,095 + IAI46_23960 0.56 +0.5
5,102,096 - IAI46_23960 0.56 -1.8
5,102,096 - IAI46_23960 0.56 +0.1
5,102,096 - IAI46_23960 0.56 +0.7
5,102,144 - IAI46_23960 0.60 -0.1
5,102,156 + IAI46_23960 0.61 -0.8
5,102,156 + IAI46_23960 0.61 +0.7
5,102,157 - IAI46_23960 0.61 -0.1
5,102,260 + IAI46_23960 0.69 +0.8
5,102,260 + IAI46_23960 0.69 -0.2
5,102,260 + IAI46_23960 0.69 +0.2
5,102,260 + IAI46_23960 0.69 +0.5
5,102,333 - IAI46_23960 0.74 +0.2
5,102,368 - IAI46_23960 0.77 -0.1
5,102,386 + IAI46_23960 0.78 +0.5
5,102,414 + IAI46_23960 0.80 +0.3
5,102,552 + +0.3
5,102,553 - +0.5
5,102,597 + -1.4
5,102,597 + +1.5
5,102,597 + -0.2
5,102,613 - +1.3
5,102,664 + +0.1
5,102,672 + -0.1
5,102,708 + -0.3
5,102,713 + -0.2
5,102,721 - -0.1
5,102,721 - -0.2
5,102,738 + -0.2
5,102,762 - +0.4
5,102,775 + +0.7
5,102,775 + +0.1
5,102,775 + +0.8
5,102,775 + -0.3
5,102,776 - -0.5
5,102,776 - -1.1
5,102,776 - +0.6
5,102,776 - +0.1
5,102,799 + +0.1
5,102,799 + +0.4
5,102,799 + +0.1
5,102,799 + -0.0
5,102,799 + +0.3
5,102,800 - +0.3
5,102,800 - -0.1
5,102,821 - -1.3
5,102,926 + +0.6
5,102,927 - -0.7
5,102,928 + -1.0
5,102,940 - +0.5
5,102,963 + -0.2
5,102,964 - +0.1
5,102,964 - -0.6
5,103,145 + IAI46_23965 0.11 +0.7
5,103,145 + IAI46_23965 0.11 -1.1
5,103,146 - IAI46_23965 0.11 -0.5
5,103,307 + IAI46_23965 0.27 +0.9
5,103,308 - IAI46_23965 0.27 +0.4
5,103,433 - IAI46_23965 0.40 +0.2
5,103,449 - IAI46_23965 0.41 +1.1
5,103,449 - IAI46_23965 0.41 -0.2
5,103,454 + IAI46_23965 0.42 +0.2
5,103,454 + IAI46_23965 0.42 +0.4
5,103,454 + IAI46_23965 0.42 +0.6
5,103,455 - IAI46_23965 0.42 +0.3
5,103,455 - IAI46_23965 0.42 -1.9
5,103,480 + IAI46_23965 0.44 -0.1
5,103,547 + IAI46_23965 0.51 -0.8
5,103,548 - IAI46_23965 0.51 -0.1
5,103,644 - IAI46_23965 0.61 -0.6
5,103,681 + IAI46_23965 0.65 +0.7
5,103,681 + IAI46_23965 0.65 -1.2
5,103,681 + IAI46_23965 0.65 +0.3
5,103,727 - IAI46_23965 0.69 -0.9
5,103,732 + IAI46_23965 0.70 +0.3
5,103,732 + IAI46_23965 0.70 +0.0
5,103,753 + IAI46_23965 0.72 -0.4
5,103,754 - IAI46_23965 0.72 -1.7
5,103,888 + IAI46_23965 0.85 -0.2
5,103,889 - IAI46_23965 0.85 +0.3
5,103,889 - IAI46_23965 0.85 -0.1
5,104,105 + -0.1
5,104,151 + +0.4
5,104,285 + IAI46_23970 0.17 -1.1
5,104,286 - IAI46_23970 0.17 +1.2
5,104,472 + IAI46_23970 0.44 +0.4
5,104,473 - IAI46_23970 0.44 -1.1
5,104,517 + IAI46_23970 0.51 -1.4
5,104,550 + IAI46_23970 0.55 +0.2
5,104,617 + IAI46_23970 0.65 +0.9
5,104,642 + IAI46_23970 0.69 -0.5
5,104,643 - IAI46_23970 0.69 -1.3
5,104,661 + IAI46_23970 0.71 -0.1
5,104,661 + IAI46_23970 0.71 +0.1
5,104,662 - IAI46_23970 0.71 +0.2
5,104,662 - IAI46_23970 0.71 -1.0
5,104,662 - IAI46_23970 0.71 -0.2
5,104,684 - IAI46_23970 0.75 +0.1
5,104,684 - IAI46_23970 0.75 +0.8
5,104,758 + IAI46_23970 0.85 +0.8
5,104,758 + IAI46_23970 0.85 +1.5
5,104,772 + IAI46_23970 0.87 -0.1
5,104,773 - IAI46_23970 0.87 +0.6
5,104,773 - IAI46_23970 0.87 -0.1
5,104,773 - IAI46_23970 0.87 -0.6
5,104,775 + IAI46_23970 0.88 +1.4
5,104,776 - IAI46_23970 0.88 +0.2
5,104,776 - IAI46_23970 0.88 +0.1
5,104,803 + +0.6
5,104,846 - +0.2
5,104,846 - -0.2
5,104,846 - +0.2
5,104,849 + -0.6
5,104,853 + -0.2

Or see this region's nucleotide sequence