Strain Fitness in Serratia liquefaciens MT49 around IAI46_23715

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23700 and IAI46_23705 are separated by 93 nucleotidesIAI46_23705 and IAI46_23710 are separated by 113 nucleotidesIAI46_23710 and IAI46_23715 are separated by 6 nucleotidesIAI46_23715 and IAI46_23720 overlap by 4 nucleotidesIAI46_23720 and IAI46_23725 overlap by 8 nucleotidesIAI46_23725 and IAI46_23730 overlap by 8 nucleotides IAI46_23700: IAI46_23700 - 3-dehydroquinate synthase, at 5,040,910 to 5,042,007 _23700 IAI46_23705: IAI46_23705 - shikimate kinase AroK, at 5,042,101 to 5,042,622 _23705 IAI46_23710: IAI46_23710 - hypothetical protein, at 5,042,736 to 5,042,966 _23710 IAI46_23715: IAI46_23715 - DNA uptake porin HofQ, at 5,042,973 to 5,044,214 _23715 IAI46_23720: IAI46_23720 - DUF2531 family protein, at 5,044,211 to 5,044,567 _23720 IAI46_23725: IAI46_23725 - hypothetical protein, at 5,044,560 to 5,045,078 _23725 IAI46_23730: IAI46_23730 - PilN domain-containing protein, at 5,045,071 to 5,045,607 _23730 Position (kb) 5042 5043 5044 5045Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5042.033 kb on + strandat 5042.193 kb on - strand, within IAI46_23705at 5042.195 kb on - strand, within IAI46_23705at 5042.319 kb on - strand, within IAI46_23705at 5042.605 kb on - strandat 5042.639 kb on - strandat 5042.715 kb on - strandat 5042.738 kb on - strandat 5042.804 kb on - strand, within IAI46_23710at 5042.866 kb on + strand, within IAI46_23710at 5042.866 kb on + strand, within IAI46_23710at 5042.866 kb on + strand, within IAI46_23710at 5042.866 kb on + strand, within IAI46_23710at 5042.866 kb on + strand, within IAI46_23710at 5042.867 kb on - strand, within IAI46_23710at 5042.867 kb on - strand, within IAI46_23710at 5042.867 kb on - strand, within IAI46_23710at 5042.871 kb on + strand, within IAI46_23710at 5042.939 kb on + strand, within IAI46_23710at 5042.939 kb on + strand, within IAI46_23710at 5042.939 kb on + strand, within IAI46_23710at 5042.981 kb on + strandat 5042.981 kb on + strandat 5042.982 kb on - strandat 5042.996 kb on + strandat 5042.997 kb on - strandat 5043.003 kb on + strandat 5043.003 kb on + strandat 5043.003 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.089 kb on + strandat 5043.090 kb on - strandat 5043.107 kb on + strand, within IAI46_23715at 5043.120 kb on + strand, within IAI46_23715at 5043.182 kb on + strand, within IAI46_23715at 5043.182 kb on + strand, within IAI46_23715at 5043.182 kb on + strand, within IAI46_23715at 5043.182 kb on + strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.183 kb on - strand, within IAI46_23715at 5043.186 kb on + strand, within IAI46_23715at 5043.186 kb on + strand, within IAI46_23715at 5043.187 kb on - strand, within IAI46_23715at 5043.260 kb on + strand, within IAI46_23715at 5043.261 kb on - strand, within IAI46_23715at 5043.263 kb on + strand, within IAI46_23715at 5043.263 kb on + strand, within IAI46_23715at 5043.324 kb on + strand, within IAI46_23715at 5043.325 kb on - strand, within IAI46_23715at 5043.361 kb on + strand, within IAI46_23715at 5043.362 kb on - strand, within IAI46_23715at 5043.362 kb on - strand, within IAI46_23715at 5043.405 kb on - strand, within IAI46_23715at 5043.527 kb on + strand, within IAI46_23715at 5043.639 kb on - strand, within IAI46_23715at 5043.641 kb on + strand, within IAI46_23715at 5043.641 kb on + strand, within IAI46_23715at 5043.642 kb on - strand, within IAI46_23715at 5043.642 kb on - strand, within IAI46_23715at 5043.651 kb on - strand, within IAI46_23715at 5043.660 kb on + strand, within IAI46_23715at 5043.797 kb on + strand, within IAI46_23715at 5043.798 kb on - strand, within IAI46_23715at 5043.870 kb on + strand, within IAI46_23715at 5043.870 kb on + strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.871 kb on - strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.965 kb on + strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.966 kb on - strand, within IAI46_23715at 5043.985 kb on - strand, within IAI46_23715at 5044.015 kb on - strand, within IAI46_23715at 5044.020 kb on - strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.070 kb on + strand, within IAI46_23715at 5044.101 kb on + strandat 5044.101 kb on + strandat 5044.101 kb on + strandat 5044.158 kb on + strandat 5044.158 kb on + strandat 5044.158 kb on + strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.159 kb on - strandat 5044.225 kb on + strandat 5044.226 kb on - strandat 5044.226 kb on - strandat 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.252 kb on + strand, within IAI46_23720at 5044.253 kb on - strand, within IAI46_23720at 5044.280 kb on - strand, within IAI46_23720at 5044.295 kb on + strand, within IAI46_23720at 5044.316 kb on + strand, within IAI46_23720at 5044.317 kb on - strand, within IAI46_23720at 5044.390 kb on + strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.391 kb on - strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.394 kb on + strand, within IAI46_23720at 5044.567 kb on + strandat 5044.567 kb on + strandat 5044.567 kb on + strandat 5044.568 kb on - strandat 5044.568 kb on - strandat 5044.568 kb on - strandat 5044.692 kb on + strand, within IAI46_23725at 5044.693 kb on - strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.695 kb on + strand, within IAI46_23725at 5044.696 kb on - strand, within IAI46_23725at 5044.696 kb on - strand, within IAI46_23725at 5044.705 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.788 kb on + strand, within IAI46_23725at 5044.789 kb on - strand, within IAI46_23725at 5044.809 kb on - strand, within IAI46_23725at 5044.826 kb on + strand, within IAI46_23725at 5044.826 kb on + strand, within IAI46_23725at 5044.827 kb on - strand, within IAI46_23725at 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.072 kb on + strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.073 kb on - strandat 5045.103 kb on + strandat 5045.104 kb on - strandat 5045.104 kb on - strandat 5045.104 kb on - strandat 5045.176 kb on + strand, within IAI46_23730at 5045.176 kb on + strand, within IAI46_23730at 5045.207 kb on + strand, within IAI46_23730at 5045.208 kb on - strand, within IAI46_23730

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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5,042,033 + +1.2
5,042,193 - IAI46_23705 0.18 +3.3
5,042,195 - IAI46_23705 0.18 +1.3
5,042,319 - IAI46_23705 0.42 +0.0
5,042,605 - -0.5
5,042,639 - -0.2
5,042,715 - +0.0
5,042,738 - +1.1
5,042,804 - IAI46_23710 0.29 +0.2
5,042,866 + IAI46_23710 0.56 +0.9
5,042,866 + IAI46_23710 0.56 -0.1
5,042,866 + IAI46_23710 0.56 +0.5
5,042,866 + IAI46_23710 0.56 -0.7
5,042,866 + IAI46_23710 0.56 +0.6
5,042,867 - IAI46_23710 0.57 -0.0
5,042,867 - IAI46_23710 0.57 +0.2
5,042,867 - IAI46_23710 0.57 -0.2
5,042,871 + IAI46_23710 0.58 -0.2
5,042,939 + IAI46_23710 0.88 -0.4
5,042,939 + IAI46_23710 0.88 -0.5
5,042,939 + IAI46_23710 0.88 -0.2
5,042,981 + -1.2
5,042,981 + +0.6
5,042,982 - +0.3
5,042,996 + -0.6
5,042,997 - +0.0
5,043,003 + -0.4
5,043,003 + +0.4
5,043,003 + -0.1
5,043,089 + +0.9
5,043,089 + -0.7
5,043,089 + -0.1
5,043,089 + -0.5
5,043,089 + -0.2
5,043,089 + -0.6
5,043,089 + +0.2
5,043,090 - -0.2
5,043,107 + IAI46_23715 0.11 -0.5
5,043,120 + IAI46_23715 0.12 +0.4
5,043,182 + IAI46_23715 0.17 -0.1
5,043,182 + IAI46_23715 0.17 -0.4
5,043,182 + IAI46_23715 0.17 -0.5
5,043,182 + IAI46_23715 0.17 +0.9
5,043,183 - IAI46_23715 0.17 +0.6
5,043,183 - IAI46_23715 0.17 -0.3
5,043,183 - IAI46_23715 0.17 -0.3
5,043,183 - IAI46_23715 0.17 +0.6
5,043,183 - IAI46_23715 0.17 +0.0
5,043,183 - IAI46_23715 0.17 +0.2
5,043,186 + IAI46_23715 0.17 +0.3
5,043,186 + IAI46_23715 0.17 +0.0
5,043,187 - IAI46_23715 0.17 +0.2
5,043,260 + IAI46_23715 0.23 -0.6
5,043,261 - IAI46_23715 0.23 -2.9
5,043,263 + IAI46_23715 0.23 +1.3
5,043,263 + IAI46_23715 0.23 -0.8
5,043,324 + IAI46_23715 0.28 -0.3
5,043,325 - IAI46_23715 0.28 +0.1
5,043,361 + IAI46_23715 0.31 -0.0
5,043,362 - IAI46_23715 0.31 -0.2
5,043,362 - IAI46_23715 0.31 +0.9
5,043,405 - IAI46_23715 0.35 -0.6
5,043,527 + IAI46_23715 0.45 +0.2
5,043,639 - IAI46_23715 0.54 +0.3
5,043,641 + IAI46_23715 0.54 +0.0
5,043,641 + IAI46_23715 0.54 -0.6
5,043,642 - IAI46_23715 0.54 +0.2
5,043,642 - IAI46_23715 0.54 -0.2
5,043,651 - IAI46_23715 0.55 +0.5
5,043,660 + IAI46_23715 0.55 +0.4
5,043,797 + IAI46_23715 0.66 +0.0
5,043,798 - IAI46_23715 0.66 -0.1
5,043,870 + IAI46_23715 0.72 -0.7
5,043,870 + IAI46_23715 0.72 -0.4
5,043,871 - IAI46_23715 0.72 -0.9
5,043,871 - IAI46_23715 0.72 +1.4
5,043,871 - IAI46_23715 0.72 -0.3
5,043,871 - IAI46_23715 0.72 +0.9
5,043,965 + IAI46_23715 0.80 +0.2
5,043,965 + IAI46_23715 0.80 +0.0
5,043,965 + IAI46_23715 0.80 +0.5
5,043,965 + IAI46_23715 0.80 +0.1
5,043,965 + IAI46_23715 0.80 +1.9
5,043,966 - IAI46_23715 0.80 +0.3
5,043,966 - IAI46_23715 0.80 +0.6
5,043,966 - IAI46_23715 0.80 +0.1
5,043,966 - IAI46_23715 0.80 +0.8
5,043,966 - IAI46_23715 0.80 -0.9
5,043,985 - IAI46_23715 0.81 +0.2
5,044,015 - IAI46_23715 0.84 +0.1
5,044,020 - IAI46_23715 0.84 +1.0
5,044,070 + IAI46_23715 0.88 +0.5
5,044,070 + IAI46_23715 0.88 -0.6
5,044,070 + IAI46_23715 0.88 -0.1
5,044,101 + +0.5
5,044,101 + -0.4
5,044,101 + -1.7
5,044,158 + -1.6
5,044,158 + +0.1
5,044,158 + +0.1
5,044,159 - -0.2
5,044,159 - +0.0
5,044,159 - -2.3
5,044,159 - +1.6
5,044,159 - -0.3
5,044,225 + -0.2
5,044,226 - -1.0
5,044,226 - -0.2
5,044,252 + IAI46_23720 0.11 +0.6
5,044,252 + IAI46_23720 0.11 +0.2
5,044,252 + IAI46_23720 0.11 +1.1
5,044,252 + IAI46_23720 0.11 +0.2
5,044,253 - IAI46_23720 0.12 +1.4
5,044,280 - IAI46_23720 0.19 -1.0
5,044,295 + IAI46_23720 0.24 +0.4
5,044,316 + IAI46_23720 0.29 -0.3
5,044,317 - IAI46_23720 0.30 +0.2
5,044,390 + IAI46_23720 0.50 +0.1
5,044,391 - IAI46_23720 0.50 -0.6
5,044,391 - IAI46_23720 0.50 +0.7
5,044,391 - IAI46_23720 0.50 +0.0
5,044,391 - IAI46_23720 0.50 +1.1
5,044,394 + IAI46_23720 0.51 +0.3
5,044,394 + IAI46_23720 0.51 +0.7
5,044,394 + IAI46_23720 0.51 +0.1
5,044,394 + IAI46_23720 0.51 +0.9
5,044,567 + +1.1
5,044,567 + +0.3
5,044,567 + -0.5
5,044,568 - +1.4
5,044,568 - +0.3
5,044,568 - +0.2
5,044,692 + IAI46_23725 0.25 +0.5
5,044,693 - IAI46_23725 0.26 -0.2
5,044,695 + IAI46_23725 0.26 -1.0
5,044,695 + IAI46_23725 0.26 -0.4
5,044,695 + IAI46_23725 0.26 +0.7
5,044,695 + IAI46_23725 0.26 +1.3
5,044,696 - IAI46_23725 0.26 -0.2
5,044,696 - IAI46_23725 0.26 +0.9
5,044,705 + IAI46_23725 0.28 +0.4
5,044,788 + IAI46_23725 0.44 +0.5
5,044,788 + IAI46_23725 0.44 +1.1
5,044,788 + IAI46_23725 0.44 +1.0
5,044,788 + IAI46_23725 0.44 -0.2
5,044,789 - IAI46_23725 0.44 +0.5
5,044,809 - IAI46_23725 0.48 +1.8
5,044,826 + IAI46_23725 0.51 +1.4
5,044,826 + IAI46_23725 0.51 +0.6
5,044,827 - IAI46_23725 0.51 +0.6
5,045,072 + +0.1
5,045,072 + +1.3
5,045,072 + +0.4
5,045,072 + -1.1
5,045,073 - -0.1
5,045,073 - +0.5
5,045,073 - +0.7
5,045,073 - +0.2
5,045,103 + +0.6
5,045,104 - +0.5
5,045,104 - -0.6
5,045,104 - +0.5
5,045,176 + IAI46_23730 0.20 +0.9
5,045,176 + IAI46_23730 0.20 +0.7
5,045,207 + IAI46_23730 0.25 +0.0
5,045,208 - IAI46_23730 0.26 +0.3

Or see this region's nucleotide sequence