Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_23570 and IAI46_23575 are separated by 36 nucleotides IAI46_23575 and IAI46_23580 are separated by 379 nucleotides IAI46_23580 and IAI46_23585 are separated by 54 nucleotides
IAI46_23570: IAI46_23570 - phosphoribulokinase, at 5,012,770 to 5,013,639
_23570
IAI46_23575: IAI46_23575 - OsmC family protein, at 5,013,676 to 5,014,083
_23575
IAI46_23580: IAI46_23580 - cAMP-activated global transcriptional regulator CRP, at 5,014,463 to 5,015,095
_23580
IAI46_23585: IAI46_23585 - FUSC family protein, at 5,015,150 to 5,017,225
_23585
Position (kb) 5014
5015
5016 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5013.528 kb on + strand, within IAI46_23570 at 5013.537 kb on + strand, within IAI46_23570 at 5013.537 kb on + strand, within IAI46_23570 at 5013.537 kb on + strand, within IAI46_23570 at 5013.538 kb on - strand, within IAI46_23570 at 5013.538 kb on - strand, within IAI46_23570 at 5013.538 kb on - strand, within IAI46_23570 at 5013.538 kb on - strand, within IAI46_23570 at 5013.543 kb on + strand, within IAI46_23570 at 5013.543 kb on + strand, within IAI46_23570 at 5013.544 kb on - strand, within IAI46_23570 at 5013.637 kb on + strand at 5013.638 kb on - strand at 5013.643 kb on - strand at 5013.654 kb on + strand at 5013.670 kb on + strand at 5013.749 kb on + strand, within IAI46_23575 at 5013.749 kb on + strand, within IAI46_23575 at 5013.750 kb on - strand, within IAI46_23575 at 5013.816 kb on + strand, within IAI46_23575 at 5013.816 kb on + strand, within IAI46_23575 at 5013.817 kb on - strand, within IAI46_23575 at 5013.990 kb on + strand, within IAI46_23575 at 5014.016 kb on - strand, within IAI46_23575 at 5014.016 kb on - strand, within IAI46_23575 at 5014.068 kb on + strand at 5014.068 kb on + strand at 5014.069 kb on - strand at 5014.069 kb on - strand at 5014.069 kb on - strand at 5014.069 kb on - strand at 5014.100 kb on - strand at 5014.157 kb on - strand at 5014.157 kb on - strand at 5014.205 kb on - strand at 5014.221 kb on + strand at 5014.294 kb on + strand at 5014.318 kb on + strand at 5014.318 kb on + strand at 5014.318 kb on + strand at 5014.318 kb on + strand at 5014.318 kb on + strand at 5014.319 kb on - strand at 5014.319 kb on - strand at 5014.321 kb on + strand at 5014.321 kb on + strand at 5014.322 kb on - strand at 5014.322 kb on - strand at 5014.322 kb on - strand at 5014.326 kb on + strand at 5014.326 kb on + strand at 5014.339 kb on + strand at 5014.339 kb on + strand at 5014.339 kb on + strand at 5014.339 kb on + strand at 5014.339 kb on + strand at 5014.341 kb on + strand at 5014.341 kb on + strand at 5014.345 kb on + strand at 5014.370 kb on + strand at 5014.370 kb on + strand at 5014.380 kb on + strand at 5014.380 kb on + strand at 5015.135 kb on - strand at 5015.146 kb on + strand at 5015.146 kb on + strand at 5015.146 kb on + strand at 5015.169 kb on - strand at 5015.169 kb on - strand at 5015.186 kb on + strand at 5015.186 kb on + strand at 5015.187 kb on - strand at 5015.187 kb on - strand at 5015.187 kb on - strand at 5015.329 kb on + strand at 5015.559 kb on + strand, within IAI46_23585 at 5015.559 kb on + strand, within IAI46_23585 at 5015.559 kb on + strand, within IAI46_23585 at 5015.560 kb on - strand, within IAI46_23585 at 5015.560 kb on - strand, within IAI46_23585 at 5015.560 kb on - strand, within IAI46_23585 at 5015.560 kb on - strand, within IAI46_23585 at 5015.560 kb on - strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.561 kb on + strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.562 kb on - strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.563 kb on + strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.564 kb on - strand, within IAI46_23585 at 5015.583 kb on - strand, within IAI46_23585 at 5015.655 kb on - strand, within IAI46_23585 at 5015.655 kb on - strand, within IAI46_23585 at 5015.655 kb on - strand, within IAI46_23585 at 5015.672 kb on + strand, within IAI46_23585 at 5015.673 kb on - strand, within IAI46_23585 at 5015.780 kb on + strand, within IAI46_23585 at 5015.780 kb on + strand, within IAI46_23585 at 5015.781 kb on - strand, within IAI46_23585 at 5015.781 kb on - strand, within IAI46_23585 at 5015.792 kb on - strand, within IAI46_23585 at 5016.003 kb on - strand, within IAI46_23585 at 5016.003 kb on - strand, within IAI46_23585 at 5016.003 kb on - strand, within IAI46_23585 at 5016.003 kb on - strand, within IAI46_23585
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 5,013,528 + IAI46_23570 0.87 +0.7 5,013,537 + IAI46_23570 0.88 +0.8 5,013,537 + IAI46_23570 0.88 +0.1 5,013,537 + IAI46_23570 0.88 -0.3 5,013,538 - IAI46_23570 0.88 +0.1 5,013,538 - IAI46_23570 0.88 +0.6 5,013,538 - IAI46_23570 0.88 -0.8 5,013,538 - IAI46_23570 0.88 -1.5 5,013,543 + IAI46_23570 0.89 -0.2 5,013,543 + IAI46_23570 0.89 -0.9 5,013,544 - IAI46_23570 0.89 +0.0 5,013,637 + -0.3 5,013,638 - +0.3 5,013,643 - +0.8 5,013,654 + -0.4 5,013,670 + -0.8 5,013,749 + IAI46_23575 0.18 +0.9 5,013,749 + IAI46_23575 0.18 -0.0 5,013,750 - IAI46_23575 0.18 -0.9 5,013,816 + IAI46_23575 0.34 +1.5 5,013,816 + IAI46_23575 0.34 -1.7 5,013,817 - IAI46_23575 0.35 +0.1 5,013,990 + IAI46_23575 0.77 +0.1 5,014,016 - IAI46_23575 0.83 +0.7 5,014,016 - IAI46_23575 0.83 +0.6 5,014,068 + +0.5 5,014,068 + +2.1 5,014,069 - +1.7 5,014,069 - +0.3 5,014,069 - +0.0 5,014,069 - +0.4 5,014,100 - +0.2 5,014,157 - -0.0 5,014,157 - +0.1 5,014,205 - -0.8 5,014,221 + +1.2 5,014,294 + +0.1 5,014,318 + -0.5 5,014,318 + +0.3 5,014,318 + +0.0 5,014,318 + +1.5 5,014,318 + -0.3 5,014,319 - +1.8 5,014,319 - +1.9 5,014,321 + +0.1 5,014,321 + +0.7 5,014,322 - +1.3 5,014,322 - +0.0 5,014,322 - +1.3 5,014,326 + -0.5 5,014,326 + +0.0 5,014,339 + +0.0 5,014,339 + +0.6 5,014,339 + +1.8 5,014,339 + +0.7 5,014,339 + +0.3 5,014,341 + +2.8 5,014,341 + +1.3 5,014,345 + +0.0 5,014,370 + +1.1 5,014,370 + +1.3 5,014,380 + +1.5 5,014,380 + +0.5 5,015,135 - +0.4 5,015,146 + -2.0 5,015,146 + -0.4 5,015,146 + -0.7 5,015,169 - -0.3 5,015,169 - -0.4 5,015,186 + +1.6 5,015,186 + -0.4 5,015,187 - +0.9 5,015,187 - -1.3 5,015,187 - +0.8 5,015,329 + -0.0 5,015,559 + IAI46_23585 0.20 -0.8 5,015,559 + IAI46_23585 0.20 +1.1 5,015,559 + IAI46_23585 0.20 +0.6 5,015,560 - IAI46_23585 0.20 -2.0 5,015,560 - IAI46_23585 0.20 -0.2 5,015,560 - IAI46_23585 0.20 -1.2 5,015,560 - IAI46_23585 0.20 -0.1 5,015,560 - IAI46_23585 0.20 -0.6 5,015,561 + IAI46_23585 0.20 -0.1 5,015,561 + IAI46_23585 0.20 -0.3 5,015,561 + IAI46_23585 0.20 +2.3 5,015,561 + IAI46_23585 0.20 +0.4 5,015,561 + IAI46_23585 0.20 -0.3 5,015,561 + IAI46_23585 0.20 -0.2 5,015,561 + IAI46_23585 0.20 +0.5 5,015,561 + IAI46_23585 0.20 +1.5 5,015,562 - IAI46_23585 0.20 -0.2 5,015,562 - IAI46_23585 0.20 -0.0 5,015,562 - IAI46_23585 0.20 -1.6 5,015,562 - IAI46_23585 0.20 +0.6 5,015,562 - IAI46_23585 0.20 -0.1 5,015,562 - IAI46_23585 0.20 +1.1 5,015,562 - IAI46_23585 0.20 +0.2 5,015,562 - IAI46_23585 0.20 +0.0 5,015,563 + IAI46_23585 0.20 -0.2 5,015,563 + IAI46_23585 0.20 -1.1 5,015,563 + IAI46_23585 0.20 +0.5 5,015,563 + IAI46_23585 0.20 -1.4 5,015,563 + IAI46_23585 0.20 +0.0 5,015,563 + IAI46_23585 0.20 -0.3 5,015,563 + IAI46_23585 0.20 +0.3 5,015,564 - IAI46_23585 0.20 +0.4 5,015,564 - IAI46_23585 0.20 +0.0 5,015,564 - IAI46_23585 0.20 -0.9 5,015,564 - IAI46_23585 0.20 -0.0 5,015,564 - IAI46_23585 0.20 -0.5 5,015,564 - IAI46_23585 0.20 +0.3 5,015,564 - IAI46_23585 0.20 +0.5 5,015,583 - IAI46_23585 0.21 +0.3 5,015,655 - IAI46_23585 0.24 -1.3 5,015,655 - IAI46_23585 0.24 -0.2 5,015,655 - IAI46_23585 0.24 +1.0 5,015,672 + IAI46_23585 0.25 +0.3 5,015,673 - IAI46_23585 0.25 +0.7 5,015,780 + IAI46_23585 0.30 +0.7 5,015,780 + IAI46_23585 0.30 -0.1 5,015,781 - IAI46_23585 0.30 -0.5 5,015,781 - IAI46_23585 0.30 -0.4 5,015,792 - IAI46_23585 0.31 -1.3 5,016,003 - IAI46_23585 0.41 +0.1 5,016,003 - IAI46_23585 0.41 +0.1 5,016,003 - IAI46_23585 0.41 +0.0 5,016,003 - IAI46_23585 0.41 +0.5
Or see this region's nucleotide sequence