Strain Fitness in Serratia liquefaciens MT49 around IAI46_23090

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23085 and IAI46_23090 are separated by 63 nucleotidesIAI46_23090 and IAI46_23095 are separated by 273 nucleotides IAI46_23085: IAI46_23085 - capsule assembly Wzi family protein, at 4,922,992 to 4,924,425 _23085 IAI46_23090: IAI46_23090 - glucose-6-phosphate isomerase, at 4,924,489 to 4,926,135 _23090 IAI46_23095: IAI46_23095 - sodium:proton antiporter, at 4,926,409 to 4,928,217 _23095 Position (kb) 4924 4925 4926 4927Strain fitness (log2 ratio) -3 -2 -1 0 1at 4923.501 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.574 kb on - strand, within IAI46_23085at 4923.641 kb on - strand, within IAI46_23085at 4923.671 kb on - strand, within IAI46_23085at 4923.712 kb on - strand, within IAI46_23085at 4923.922 kb on + strand, within IAI46_23085at 4923.976 kb on + strand, within IAI46_23085at 4923.977 kb on - strand, within IAI46_23085at 4923.984 kb on - strand, within IAI46_23085at 4924.023 kb on + strand, within IAI46_23085at 4924.023 kb on + strand, within IAI46_23085at 4924.024 kb on - strand, within IAI46_23085at 4924.032 kb on + strand, within IAI46_23085at 4924.033 kb on - strand, within IAI46_23085at 4924.033 kb on - strand, within IAI46_23085at 4924.056 kb on + strand, within IAI46_23085at 4924.071 kb on + strand, within IAI46_23085at 4924.071 kb on + strand, within IAI46_23085at 4924.081 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.090 kb on + strand, within IAI46_23085at 4924.091 kb on - strand, within IAI46_23085at 4924.091 kb on - strand, within IAI46_23085at 4924.091 kb on - strand, within IAI46_23085at 4924.091 kb on - strand, within IAI46_23085at 4924.091 kb on - strand, within IAI46_23085at 4924.096 kb on + strand, within IAI46_23085at 4924.096 kb on + strand, within IAI46_23085at 4924.098 kb on + strand, within IAI46_23085at 4924.099 kb on - strand, within IAI46_23085at 4924.108 kb on + strand, within IAI46_23085at 4924.109 kb on - strand, within IAI46_23085at 4924.111 kb on + strand, within IAI46_23085at 4924.111 kb on + strand, within IAI46_23085at 4924.112 kb on - strand, within IAI46_23085at 4924.175 kb on + strand, within IAI46_23085at 4924.222 kb on + strand, within IAI46_23085at 4924.223 kb on - strand, within IAI46_23085at 4924.223 kb on - strand, within IAI46_23085at 4924.298 kb on + strandat 4924.298 kb on + strandat 4924.310 kb on - strandat 4924.339 kb on - strandat 4924.386 kb on - strandat 4924.413 kb on + strandat 4924.424 kb on - strandat 4924.486 kb on + strandat 4924.486 kb on + strandat 4924.487 kb on - strandat 4924.487 kb on - strandat 4924.487 kb on - strandat 4924.670 kb on + strand, within IAI46_23090at 4924.671 kb on - strand, within IAI46_23090at 4924.750 kb on + strand, within IAI46_23090at 4924.766 kb on - strand, within IAI46_23090at 4924.816 kb on + strand, within IAI46_23090at 4924.817 kb on - strand, within IAI46_23090at 4924.817 kb on - strand, within IAI46_23090at 4924.834 kb on - strand, within IAI46_23090at 4924.905 kb on + strand, within IAI46_23090at 4924.906 kb on - strand, within IAI46_23090at 4925.027 kb on + strand, within IAI46_23090at 4925.027 kb on + strand, within IAI46_23090at 4925.057 kb on + strand, within IAI46_23090at 4925.058 kb on - strand, within IAI46_23090at 4925.058 kb on - strand, within IAI46_23090at 4925.058 kb on - strand, within IAI46_23090at 4925.058 kb on - strand, within IAI46_23090at 4925.058 kb on - strand, within IAI46_23090at 4925.061 kb on + strand, within IAI46_23090at 4925.062 kb on - strand, within IAI46_23090at 4925.114 kb on + strand, within IAI46_23090at 4925.114 kb on + strand, within IAI46_23090at 4925.114 kb on + strand, within IAI46_23090at 4925.123 kb on + strand, within IAI46_23090at 4925.124 kb on - strand, within IAI46_23090at 4925.124 kb on - strand, within IAI46_23090at 4925.134 kb on - strand, within IAI46_23090at 4925.165 kb on + strand, within IAI46_23090at 4925.295 kb on + strand, within IAI46_23090at 4925.295 kb on + strand, within IAI46_23090at 4925.646 kb on + strand, within IAI46_23090at 4925.646 kb on + strand, within IAI46_23090at 4925.646 kb on + strand, within IAI46_23090at 4925.646 kb on + strand, within IAI46_23090at 4925.646 kb on + strand, within IAI46_23090at 4925.647 kb on - strand, within IAI46_23090at 4925.647 kb on - strand, within IAI46_23090at 4925.647 kb on - strand, within IAI46_23090at 4925.647 kb on - strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.648 kb on + strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.649 kb on - strand, within IAI46_23090at 4925.674 kb on - strand, within IAI46_23090at 4925.679 kb on + strand, within IAI46_23090at 4925.683 kb on + strand, within IAI46_23090at 4925.683 kb on + strand, within IAI46_23090at 4925.695 kb on - strand, within IAI46_23090at 4925.695 kb on - strand, within IAI46_23090at 4925.695 kb on - strand, within IAI46_23090at 4925.841 kb on + strand, within IAI46_23090at 4925.842 kb on - strand, within IAI46_23090at 4925.842 kb on - strand, within IAI46_23090at 4925.842 kb on - strand, within IAI46_23090at 4925.865 kb on + strand, within IAI46_23090at 4925.866 kb on - strand, within IAI46_23090at 4925.866 kb on - strand, within IAI46_23090at 4925.979 kb on - strandat 4925.979 kb on - strandat 4926.061 kb on + strandat 4926.062 kb on - strandat 4926.126 kb on + strandat 4926.159 kb on + strandat 4926.160 kb on - strandat 4926.185 kb on - strandat 4926.203 kb on + strandat 4926.203 kb on + strandat 4926.203 kb on + strandat 4926.203 kb on + strandat 4926.203 kb on + strandat 4926.204 kb on - strandat 4926.271 kb on + strandat 4926.272 kb on - strandat 4926.305 kb on + strandat 4926.306 kb on - strandat 4926.306 kb on - strandat 4926.306 kb on - strandat 4926.331 kb on - strandat 4926.349 kb on + strandat 4926.349 kb on + strandat 4926.349 kb on + strandat 4926.350 kb on - strandat 4926.350 kb on - strandat 4926.353 kb on + strandat 4926.353 kb on + strandat 4926.353 kb on + strandat 4926.353 kb on + strandat 4926.354 kb on - strandat 4926.354 kb on - strandat 4926.358 kb on + strandat 4926.416 kb on + strandat 4926.417 kb on - strandat 4926.417 kb on - strandat 4926.442 kb on - strandat 4926.485 kb on + strandat 4926.486 kb on - strandat 4926.515 kb on + strandat 4926.516 kb on - strandat 4926.612 kb on + strand, within IAI46_23095at 4926.612 kb on + strand, within IAI46_23095at 4926.612 kb on + strand, within IAI46_23095at 4926.654 kb on - strand, within IAI46_23095at 4926.654 kb on - strand, within IAI46_23095at 4926.654 kb on - strand, within IAI46_23095at 4926.674 kb on + strand, within IAI46_23095at 4926.675 kb on - strand, within IAI46_23095at 4926.675 kb on - strand, within IAI46_23095at 4926.679 kb on - strand, within IAI46_23095at 4926.858 kb on - strand, within IAI46_23095at 4926.903 kb on + strand, within IAI46_23095at 4926.953 kb on - strand, within IAI46_23095at 4926.953 kb on - strand, within IAI46_23095at 4926.953 kb on - strand, within IAI46_23095at 4927.021 kb on + strand, within IAI46_23095at 4927.063 kb on + strand, within IAI46_23095

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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4,923,501 - IAI46_23085 0.35 +0.4
4,923,574 - IAI46_23085 0.41 +0.1
4,923,574 - IAI46_23085 0.41 -0.1
4,923,574 - IAI46_23085 0.41 +0.1
4,923,641 - IAI46_23085 0.45 -0.0
4,923,671 - IAI46_23085 0.47 -0.2
4,923,712 - IAI46_23085 0.50 -0.6
4,923,922 + IAI46_23085 0.65 +0.2
4,923,976 + IAI46_23085 0.69 +0.2
4,923,977 - IAI46_23085 0.69 -0.3
4,923,984 - IAI46_23085 0.69 -2.0
4,924,023 + IAI46_23085 0.72 +0.1
4,924,023 + IAI46_23085 0.72 -0.1
4,924,024 - IAI46_23085 0.72 +0.1
4,924,032 + IAI46_23085 0.73 -0.2
4,924,033 - IAI46_23085 0.73 +0.6
4,924,033 - IAI46_23085 0.73 -0.9
4,924,056 + IAI46_23085 0.74 -0.2
4,924,071 + IAI46_23085 0.75 -0.4
4,924,071 + IAI46_23085 0.75 +0.5
4,924,081 + IAI46_23085 0.76 -0.1
4,924,090 + IAI46_23085 0.77 +0.2
4,924,090 + IAI46_23085 0.77 +0.1
4,924,090 + IAI46_23085 0.77 +0.1
4,924,090 + IAI46_23085 0.77 +0.8
4,924,090 + IAI46_23085 0.77 -0.6
4,924,090 + IAI46_23085 0.77 +0.4
4,924,091 - IAI46_23085 0.77 -0.2
4,924,091 - IAI46_23085 0.77 +0.2
4,924,091 - IAI46_23085 0.77 -0.0
4,924,091 - IAI46_23085 0.77 +0.5
4,924,091 - IAI46_23085 0.77 -0.0
4,924,096 + IAI46_23085 0.77 -0.2
4,924,096 + IAI46_23085 0.77 +0.6
4,924,098 + IAI46_23085 0.77 +0.2
4,924,099 - IAI46_23085 0.77 +0.2
4,924,108 + IAI46_23085 0.78 +0.0
4,924,109 - IAI46_23085 0.78 -1.0
4,924,111 + IAI46_23085 0.78 -0.0
4,924,111 + IAI46_23085 0.78 +0.0
4,924,112 - IAI46_23085 0.78 -0.0
4,924,175 + IAI46_23085 0.82 -0.7
4,924,222 + IAI46_23085 0.86 -0.9
4,924,223 - IAI46_23085 0.86 +0.4
4,924,223 - IAI46_23085 0.86 +0.1
4,924,298 + -1.0
4,924,298 + -0.6
4,924,310 - +0.6
4,924,339 - -0.8
4,924,386 - +1.1
4,924,413 + +1.3
4,924,424 - +0.2
4,924,486 + +1.3
4,924,486 + +1.3
4,924,487 - -0.5
4,924,487 - +0.0
4,924,487 - +0.0
4,924,670 + IAI46_23090 0.11 -2.7
4,924,671 - IAI46_23090 0.11 -1.6
4,924,750 + IAI46_23090 0.16 -1.4
4,924,766 - IAI46_23090 0.17 -2.2
4,924,816 + IAI46_23090 0.20 -3.1
4,924,817 - IAI46_23090 0.20 -0.5
4,924,817 - IAI46_23090 0.20 -1.5
4,924,834 - IAI46_23090 0.21 -2.6
4,924,905 + IAI46_23090 0.25 -3.6
4,924,906 - IAI46_23090 0.25 -0.8
4,925,027 + IAI46_23090 0.33 -1.0
4,925,027 + IAI46_23090 0.33 -0.2
4,925,057 + IAI46_23090 0.34 -0.5
4,925,058 - IAI46_23090 0.35 -3.2
4,925,058 - IAI46_23090 0.35 -1.8
4,925,058 - IAI46_23090 0.35 -0.9
4,925,058 - IAI46_23090 0.35 -1.5
4,925,058 - IAI46_23090 0.35 -1.0
4,925,061 + IAI46_23090 0.35 -2.7
4,925,062 - IAI46_23090 0.35 -0.9
4,925,114 + IAI46_23090 0.38 -1.3
4,925,114 + IAI46_23090 0.38 +0.5
4,925,114 + IAI46_23090 0.38 -0.8
4,925,123 + IAI46_23090 0.38 -2.0
4,925,124 - IAI46_23090 0.39 -1.4
4,925,124 - IAI46_23090 0.39 -0.7
4,925,134 - IAI46_23090 0.39 +0.5
4,925,165 + IAI46_23090 0.41 -1.8
4,925,295 + IAI46_23090 0.49 -1.8
4,925,295 + IAI46_23090 0.49 -0.6
4,925,646 + IAI46_23090 0.70 -1.3
4,925,646 + IAI46_23090 0.70 -2.5
4,925,646 + IAI46_23090 0.70 -2.3
4,925,646 + IAI46_23090 0.70 -0.5
4,925,646 + IAI46_23090 0.70 -1.9
4,925,647 - IAI46_23090 0.70 -0.0
4,925,647 - IAI46_23090 0.70 +0.3
4,925,647 - IAI46_23090 0.70 -1.8
4,925,647 - IAI46_23090 0.70 -2.5
4,925,648 + IAI46_23090 0.70 -1.3
4,925,648 + IAI46_23090 0.70 +0.1
4,925,648 + IAI46_23090 0.70 -0.5
4,925,648 + IAI46_23090 0.70 -0.0
4,925,648 + IAI46_23090 0.70 -1.9
4,925,648 + IAI46_23090 0.70 -1.1
4,925,648 + IAI46_23090 0.70 -1.6
4,925,648 + IAI46_23090 0.70 -1.9
4,925,649 - IAI46_23090 0.70 -1.5
4,925,649 - IAI46_23090 0.70 -0.5
4,925,649 - IAI46_23090 0.70 -1.7
4,925,649 - IAI46_23090 0.70 -2.1
4,925,649 - IAI46_23090 0.70 -1.3
4,925,649 - IAI46_23090 0.70 -0.2
4,925,649 - IAI46_23090 0.70 -1.6
4,925,649 - IAI46_23090 0.70 -2.3
4,925,649 - IAI46_23090 0.70 -1.3
4,925,649 - IAI46_23090 0.70 -1.1
4,925,649 - IAI46_23090 0.70 -1.3
4,925,674 - IAI46_23090 0.72 -2.1
4,925,679 + IAI46_23090 0.72 -1.4
4,925,683 + IAI46_23090 0.72 -2.1
4,925,683 + IAI46_23090 0.72 -0.9
4,925,695 - IAI46_23090 0.73 -1.4
4,925,695 - IAI46_23090 0.73 -2.5
4,925,695 - IAI46_23090 0.73 -0.9
4,925,841 + IAI46_23090 0.82 -1.8
4,925,842 - IAI46_23090 0.82 -2.5
4,925,842 - IAI46_23090 0.82 -3.3
4,925,842 - IAI46_23090 0.82 -2.1
4,925,865 + IAI46_23090 0.84 -2.2
4,925,866 - IAI46_23090 0.84 -0.7
4,925,866 - IAI46_23090 0.84 -0.3
4,925,979 - -2.5
4,925,979 - -2.2
4,926,061 + -2.7
4,926,062 - -1.9
4,926,126 + -0.3
4,926,159 + -0.3
4,926,160 - +1.7
4,926,185 - +0.5
4,926,203 + -2.4
4,926,203 + -2.6
4,926,203 + -1.1
4,926,203 + -0.1
4,926,203 + -1.4
4,926,204 - -0.2
4,926,271 + +1.5
4,926,272 - +0.9
4,926,305 + +0.4
4,926,306 - -0.5
4,926,306 - -0.2
4,926,306 - -0.1
4,926,331 - +1.1
4,926,349 + +0.6
4,926,349 + -0.1
4,926,349 + -0.3
4,926,350 - +0.5
4,926,350 - +0.3
4,926,353 + +0.2
4,926,353 + +0.4
4,926,353 + -0.4
4,926,353 + -0.8
4,926,354 - -0.7
4,926,354 - +0.4
4,926,358 + -0.8
4,926,416 + -0.7
4,926,417 - -0.3
4,926,417 - +0.5
4,926,442 - -1.6
4,926,485 + -1.1
4,926,486 - -0.2
4,926,515 + +0.8
4,926,516 - +0.4
4,926,612 + IAI46_23095 0.11 -0.2
4,926,612 + IAI46_23095 0.11 -1.1
4,926,612 + IAI46_23095 0.11 +0.0
4,926,654 - IAI46_23095 0.14 +0.2
4,926,654 - IAI46_23095 0.14 -1.1
4,926,654 - IAI46_23095 0.14 -1.0
4,926,674 + IAI46_23095 0.15 +1.0
4,926,675 - IAI46_23095 0.15 -0.5
4,926,675 - IAI46_23095 0.15 +0.6
4,926,679 - IAI46_23095 0.15 -0.9
4,926,858 - IAI46_23095 0.25 -0.9
4,926,903 + IAI46_23095 0.27 +0.8
4,926,953 - IAI46_23095 0.30 +0.3
4,926,953 - IAI46_23095 0.30 -0.2
4,926,953 - IAI46_23095 0.30 -1.0
4,927,021 + IAI46_23095 0.34 +0.1
4,927,063 + IAI46_23095 0.36 -0.1

Or see this region's nucleotide sequence