Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_22520 and IAI46_22525 overlap by 17 nucleotides IAI46_22525 and IAI46_22530 are separated by 66 nucleotides IAI46_22530 and IAI46_22535 are separated by 11 nucleotides
IAI46_22520: IAI46_22520 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 4,792,220 to 4,793,338
_22520
IAI46_22525: IAI46_22525 - amidohydrolase/deacetylase family metallohydrolase, at 4,793,322 to 4,794,461
_22525
IAI46_22530: IAI46_22530 - DUF4310 family protein, at 4,794,528 to 4,795,178
_22530
IAI46_22535: IAI46_22535 - DUF4311 domain-containing protein, at 4,795,190 to 4,795,966
_22535
Position (kb) 4793
4794
4795 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4792.329 kb on + strand at 4792.329 kb on + strand at 4792.341 kb on + strand, within IAI46_22520 at 4792.342 kb on - strand, within IAI46_22520 at 4792.342 kb on - strand, within IAI46_22520 at 4792.342 kb on - strand, within IAI46_22520 at 4792.342 kb on - strand, within IAI46_22520 at 4792.383 kb on + strand, within IAI46_22520 at 4792.383 kb on + strand, within IAI46_22520 at 4792.435 kb on + strand, within IAI46_22520 at 4792.436 kb on - strand, within IAI46_22520 at 4792.436 kb on - strand, within IAI46_22520 at 4792.565 kb on + strand, within IAI46_22520 at 4792.653 kb on + strand, within IAI46_22520 at 4792.714 kb on - strand, within IAI46_22520 at 4792.714 kb on - strand, within IAI46_22520 at 4792.740 kb on + strand, within IAI46_22520 at 4792.743 kb on + strand, within IAI46_22520 at 4792.744 kb on - strand, within IAI46_22520 at 4792.744 kb on - strand, within IAI46_22520 at 4792.744 kb on - strand, within IAI46_22520 at 4792.792 kb on + strand, within IAI46_22520 at 4792.793 kb on - strand, within IAI46_22520 at 4792.793 kb on - strand, within IAI46_22520 at 4792.864 kb on + strand, within IAI46_22520 at 4792.864 kb on + strand, within IAI46_22520 at 4792.864 kb on + strand, within IAI46_22520 at 4792.865 kb on - strand, within IAI46_22520 at 4792.866 kb on + strand, within IAI46_22520 at 4792.866 kb on + strand, within IAI46_22520 at 4792.867 kb on - strand, within IAI46_22520 at 4792.891 kb on + strand, within IAI46_22520 at 4793.002 kb on + strand, within IAI46_22520 at 4793.038 kb on + strand, within IAI46_22520 at 4793.038 kb on + strand, within IAI46_22520 at 4793.041 kb on + strand, within IAI46_22520 at 4793.042 kb on - strand, within IAI46_22520 at 4793.042 kb on - strand, within IAI46_22520 at 4793.042 kb on - strand, within IAI46_22520 at 4793.172 kb on + strand, within IAI46_22520 at 4793.172 kb on + strand, within IAI46_22520 at 4793.172 kb on + strand, within IAI46_22520 at 4793.172 kb on + strand, within IAI46_22520 at 4793.173 kb on - strand, within IAI46_22520 at 4793.173 kb on - strand, within IAI46_22520 at 4793.173 kb on - strand, within IAI46_22520 at 4793.173 kb on - strand, within IAI46_22520 at 4793.212 kb on - strand, within IAI46_22520 at 4793.212 kb on - strand, within IAI46_22520 at 4793.240 kb on + strand at 4793.241 kb on - strand at 4793.364 kb on + strand at 4793.365 kb on - strand at 4793.502 kb on + strand, within IAI46_22525 at 4793.513 kb on + strand, within IAI46_22525 at 4793.514 kb on - strand, within IAI46_22525 at 4793.650 kb on + strand, within IAI46_22525 at 4793.650 kb on + strand, within IAI46_22525 at 4793.650 kb on + strand, within IAI46_22525 at 4793.651 kb on - strand, within IAI46_22525 at 4793.654 kb on + strand, within IAI46_22525 at 4793.655 kb on - strand, within IAI46_22525 at 4793.669 kb on + strand, within IAI46_22525 at 4793.670 kb on - strand, within IAI46_22525 at 4793.670 kb on - strand, within IAI46_22525 at 4793.692 kb on - strand, within IAI46_22525 at 4793.764 kb on - strand, within IAI46_22525 at 4793.777 kb on + strand, within IAI46_22525 at 4793.777 kb on + strand, within IAI46_22525 at 4793.830 kb on + strand, within IAI46_22525 at 4793.872 kb on - strand, within IAI46_22525 at 4793.872 kb on - strand, within IAI46_22525 at 4793.904 kb on - strand, within IAI46_22525 at 4793.927 kb on + strand, within IAI46_22525 at 4793.927 kb on + strand, within IAI46_22525 at 4793.927 kb on + strand, within IAI46_22525 at 4794.164 kb on + strand, within IAI46_22525 at 4794.165 kb on - strand, within IAI46_22525 at 4794.166 kb on + strand, within IAI46_22525 at 4794.166 kb on + strand, within IAI46_22525 at 4794.167 kb on - strand, within IAI46_22525 at 4794.259 kb on + strand, within IAI46_22525 at 4794.259 kb on + strand, within IAI46_22525 at 4794.260 kb on - strand, within IAI46_22525 at 4794.278 kb on - strand, within IAI46_22525 at 4794.278 kb on - strand, within IAI46_22525 at 4794.448 kb on - strand at 4794.448 kb on - strand at 4794.448 kb on - strand at 4794.448 kb on - strand at 4794.450 kb on + strand at 4794.450 kb on + strand at 4794.451 kb on - strand at 4794.451 kb on - strand at 4794.451 kb on - strand at 4794.451 kb on - strand at 4794.451 kb on - strand at 4794.451 kb on - strand at 4794.457 kb on + strand at 4794.457 kb on + strand at 4794.458 kb on - strand at 4794.458 kb on - strand at 4794.458 kb on - strand at 4794.458 kb on - strand at 4794.461 kb on + strand at 4794.461 kb on + strand at 4794.461 kb on + strand at 4794.461 kb on + strand at 4794.462 kb on - strand at 4794.462 kb on - strand at 4794.469 kb on + strand at 4794.470 kb on - strand at 4794.479 kb on - strand at 4794.536 kb on + strand at 4794.536 kb on + strand at 4794.537 kb on - strand at 4794.537 kb on - strand at 4794.540 kb on + strand at 4794.541 kb on - strand at 4794.609 kb on - strand, within IAI46_22530 at 4794.610 kb on + strand, within IAI46_22530 at 4794.610 kb on + strand, within IAI46_22530 at 4794.610 kb on + strand, within IAI46_22530 at 4794.610 kb on + strand, within IAI46_22530 at 4794.610 kb on + strand, within IAI46_22530 at 4794.611 kb on - strand, within IAI46_22530 at 4794.612 kb on + strand, within IAI46_22530 at 4794.711 kb on - strand, within IAI46_22530 at 4794.711 kb on - strand, within IAI46_22530 at 4794.843 kb on - strand, within IAI46_22530 at 4795.069 kb on + strand, within IAI46_22530 at 4795.075 kb on + strand, within IAI46_22530 at 4795.076 kb on - strand, within IAI46_22530 at 4795.076 kb on - strand, within IAI46_22530 at 4795.076 kb on - strand, within IAI46_22530 at 4795.076 kb on - strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.078 kb on + strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.079 kb on - strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.082 kb on + strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.083 kb on - strand, within IAI46_22530 at 4795.179 kb on + strand at 4795.191 kb on + strand at 4795.191 kb on + strand at 4795.191 kb on + strand at 4795.192 kb on - strand at 4795.192 kb on - strand at 4795.192 kb on - strand at 4795.195 kb on + strand at 4795.216 kb on + strand at 4795.216 kb on + strand at 4795.216 kb on + strand at 4795.216 kb on + strand at 4795.216 kb on + strand at 4795.366 kb on + strand, within IAI46_22535 at 4795.411 kb on + strand, within IAI46_22535 at 4795.411 kb on + strand, within IAI46_22535
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 4,792,329 + +0.9 4,792,329 + +0.9 4,792,341 + IAI46_22520 0.11 +0.1 4,792,342 - IAI46_22520 0.11 +0.2 4,792,342 - IAI46_22520 0.11 +0.2 4,792,342 - IAI46_22520 0.11 +0.2 4,792,342 - IAI46_22520 0.11 +0.4 4,792,383 + IAI46_22520 0.15 +0.3 4,792,383 + IAI46_22520 0.15 -0.1 4,792,435 + IAI46_22520 0.19 +0.3 4,792,436 - IAI46_22520 0.19 -0.7 4,792,436 - IAI46_22520 0.19 +0.7 4,792,565 + IAI46_22520 0.31 +0.0 4,792,653 + IAI46_22520 0.39 +0.2 4,792,714 - IAI46_22520 0.44 +0.7 4,792,714 - IAI46_22520 0.44 +0.6 4,792,740 + IAI46_22520 0.46 +0.1 4,792,743 + IAI46_22520 0.47 -0.1 4,792,744 - IAI46_22520 0.47 -0.4 4,792,744 - IAI46_22520 0.47 -0.3 4,792,744 - IAI46_22520 0.47 +1.2 4,792,792 + IAI46_22520 0.51 -2.0 4,792,793 - IAI46_22520 0.51 -0.4 4,792,793 - IAI46_22520 0.51 +0.2 4,792,864 + IAI46_22520 0.58 +0.2 4,792,864 + IAI46_22520 0.58 +0.1 4,792,864 + IAI46_22520 0.58 +0.2 4,792,865 - IAI46_22520 0.58 +1.0 4,792,866 + IAI46_22520 0.58 +0.6 4,792,866 + IAI46_22520 0.58 +0.4 4,792,867 - IAI46_22520 0.58 -0.3 4,792,891 + IAI46_22520 0.60 +0.9 4,793,002 + IAI46_22520 0.70 +0.4 4,793,038 + IAI46_22520 0.73 +1.1 4,793,038 + IAI46_22520 0.73 -0.0 4,793,041 + IAI46_22520 0.73 -0.2 4,793,042 - IAI46_22520 0.73 +0.1 4,793,042 - IAI46_22520 0.73 +0.4 4,793,042 - IAI46_22520 0.73 +0.4 4,793,172 + IAI46_22520 0.85 -0.4 4,793,172 + IAI46_22520 0.85 +0.2 4,793,172 + IAI46_22520 0.85 +0.8 4,793,172 + IAI46_22520 0.85 +0.3 4,793,173 - IAI46_22520 0.85 -0.3 4,793,173 - IAI46_22520 0.85 -0.1 4,793,173 - IAI46_22520 0.85 -1.0 4,793,173 - IAI46_22520 0.85 -0.2 4,793,212 - IAI46_22520 0.89 +0.4 4,793,212 - IAI46_22520 0.89 +1.4 4,793,240 + -0.3 4,793,241 - -1.0 4,793,364 + +0.5 4,793,365 - +0.4 4,793,502 + IAI46_22525 0.16 +0.8 4,793,513 + IAI46_22525 0.17 +0.8 4,793,514 - IAI46_22525 0.17 +0.9 4,793,650 + IAI46_22525 0.29 -1.4 4,793,650 + IAI46_22525 0.29 +0.4 4,793,650 + IAI46_22525 0.29 -2.1 4,793,651 - IAI46_22525 0.29 -0.4 4,793,654 + IAI46_22525 0.29 +0.6 4,793,655 - IAI46_22525 0.29 +0.2 4,793,669 + IAI46_22525 0.30 -0.3 4,793,670 - IAI46_22525 0.31 +0.7 4,793,670 - IAI46_22525 0.31 -0.2 4,793,692 - IAI46_22525 0.32 +0.9 4,793,764 - IAI46_22525 0.39 +1.0 4,793,777 + IAI46_22525 0.40 +0.4 4,793,777 + IAI46_22525 0.40 -1.3 4,793,830 + IAI46_22525 0.45 -0.1 4,793,872 - IAI46_22525 0.48 -0.6 4,793,872 - IAI46_22525 0.48 -0.2 4,793,904 - IAI46_22525 0.51 -0.0 4,793,927 + IAI46_22525 0.53 +0.2 4,793,927 + IAI46_22525 0.53 +0.1 4,793,927 + IAI46_22525 0.53 +0.1 4,794,164 + IAI46_22525 0.74 -0.7 4,794,165 - IAI46_22525 0.74 -0.6 4,794,166 + IAI46_22525 0.74 +1.9 4,794,166 + IAI46_22525 0.74 -1.4 4,794,167 - IAI46_22525 0.74 -0.0 4,794,259 + IAI46_22525 0.82 +1.1 4,794,259 + IAI46_22525 0.82 +0.4 4,794,260 - IAI46_22525 0.82 +0.8 4,794,278 - IAI46_22525 0.84 -0.9 4,794,278 - IAI46_22525 0.84 +0.2 4,794,448 - -0.3 4,794,448 - +0.5 4,794,448 - -0.1 4,794,448 - +0.6 4,794,450 + +0.6 4,794,450 + -0.3 4,794,451 - +0.7 4,794,451 - +0.2 4,794,451 - +0.3 4,794,451 - -0.2 4,794,451 - +0.2 4,794,451 - +0.5 4,794,457 + -0.4 4,794,457 + +0.4 4,794,458 - -0.2 4,794,458 - -0.0 4,794,458 - -0.8 4,794,458 - -0.9 4,794,461 + -0.1 4,794,461 + -0.1 4,794,461 + +0.1 4,794,461 + +2.2 4,794,462 - -0.3 4,794,462 - -0.4 4,794,469 + -2.4 4,794,470 - +0.4 4,794,479 - -0.5 4,794,536 + +0.4 4,794,536 + -0.6 4,794,537 - +0.7 4,794,537 - +0.8 4,794,540 + -1.2 4,794,541 - -0.2 4,794,609 - IAI46_22530 0.12 -0.4 4,794,610 + IAI46_22530 0.13 -0.4 4,794,610 + IAI46_22530 0.13 +0.2 4,794,610 + IAI46_22530 0.13 -0.1 4,794,610 + IAI46_22530 0.13 -0.1 4,794,610 + IAI46_22530 0.13 -0.1 4,794,611 - IAI46_22530 0.13 +0.4 4,794,612 + IAI46_22530 0.13 -0.1 4,794,711 - IAI46_22530 0.28 -0.0 4,794,711 - IAI46_22530 0.28 -0.4 4,794,843 - IAI46_22530 0.48 -0.0 4,795,069 + IAI46_22530 0.83 +0.8 4,795,075 + IAI46_22530 0.84 +1.3 4,795,076 - IAI46_22530 0.84 +1.9 4,795,076 - IAI46_22530 0.84 -0.3 4,795,076 - IAI46_22530 0.84 +0.6 4,795,076 - IAI46_22530 0.84 +0.9 4,795,078 + IAI46_22530 0.84 +0.1 4,795,078 + IAI46_22530 0.84 +1.3 4,795,078 + IAI46_22530 0.84 -1.0 4,795,078 + IAI46_22530 0.84 -0.1 4,795,078 + IAI46_22530 0.84 +0.2 4,795,078 + IAI46_22530 0.84 -1.7 4,795,079 - IAI46_22530 0.85 -0.3 4,795,079 - IAI46_22530 0.85 +0.5 4,795,079 - IAI46_22530 0.85 -0.8 4,795,079 - IAI46_22530 0.85 +0.5 4,795,079 - IAI46_22530 0.85 -0.0 4,795,079 - IAI46_22530 0.85 +0.2 4,795,079 - IAI46_22530 0.85 +0.7 4,795,079 - IAI46_22530 0.85 -0.4 4,795,079 - IAI46_22530 0.85 +0.1 4,795,079 - IAI46_22530 0.85 -0.1 4,795,079 - IAI46_22530 0.85 +0.3 4,795,079 - IAI46_22530 0.85 -0.2 4,795,079 - IAI46_22530 0.85 -0.6 4,795,082 + IAI46_22530 0.85 +1.3 4,795,082 + IAI46_22530 0.85 -0.1 4,795,082 + IAI46_22530 0.85 +0.0 4,795,082 + IAI46_22530 0.85 +0.0 4,795,082 + IAI46_22530 0.85 -0.7 4,795,082 + IAI46_22530 0.85 +0.2 4,795,082 + IAI46_22530 0.85 +0.2 4,795,082 + IAI46_22530 0.85 -0.5 4,795,082 + IAI46_22530 0.85 +0.1 4,795,082 + IAI46_22530 0.85 +1.2 4,795,082 + IAI46_22530 0.85 +0.3 4,795,082 + IAI46_22530 0.85 +0.0 4,795,082 + IAI46_22530 0.85 +0.3 4,795,082 + IAI46_22530 0.85 +0.4 4,795,083 - IAI46_22530 0.85 -0.3 4,795,083 - IAI46_22530 0.85 +0.4 4,795,083 - IAI46_22530 0.85 +0.3 4,795,083 - IAI46_22530 0.85 -0.3 4,795,083 - IAI46_22530 0.85 +0.1 4,795,083 - IAI46_22530 0.85 +0.0 4,795,083 - IAI46_22530 0.85 -0.4 4,795,083 - IAI46_22530 0.85 +0.3 4,795,083 - IAI46_22530 0.85 +0.7 4,795,083 - IAI46_22530 0.85 -0.5 4,795,083 - IAI46_22530 0.85 -0.4 4,795,083 - IAI46_22530 0.85 +0.4 4,795,083 - IAI46_22530 0.85 -0.6 4,795,179 + -1.5 4,795,191 + -1.3 4,795,191 + +0.7 4,795,191 + +0.1 4,795,192 - +0.1 4,795,192 - -0.1 4,795,192 - +0.1 4,795,195 + +0.2 4,795,216 + +1.2 4,795,216 + +0.0 4,795,216 + -0.1 4,795,216 + +0.3 4,795,216 + +0.1 4,795,366 + IAI46_22535 0.23 -0.3 4,795,411 + IAI46_22535 0.28 +0.5 4,795,411 + IAI46_22535 0.28 +0.6
Or see this region's nucleotide sequence