Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_20320 and IAI46_20325 are separated by 171 nucleotides IAI46_20325 and IAI46_20330 are separated by 30 nucleotides IAI46_20330 and IAI46_20335 overlap by 8 nucleotides IAI46_20335 and IAI46_20340 are separated by 52 nucleotides
IAI46_20320: IAI46_20320 - LOG family protein, at 4,294,141 to 4,295,505
_20320
IAI46_20325: IAI46_20325 - flap endonuclease Xni, at 4,295,677 to 4,296,432
_20325
IAI46_20330: IAI46_20330 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,296,463 to 4,297,566
_20330
IAI46_20335: IAI46_20335 - DUF423 domain-containing protein, at 4,297,559 to 4,297,954
_20335
IAI46_20340: IAI46_20340 - transcriptional regulator GcvA, at 4,298,007 to 4,298,924
_20340
Position (kb) 4296
4297
4298 Strain fitness (log2 ratio) -2
-1
0
1 at 4295.476 kb on + strand at 4295.477 kb on - strand at 4295.477 kb on - strand at 4295.495 kb on + strand at 4295.495 kb on + strand at 4295.526 kb on - strand at 4295.529 kb on - strand at 4295.564 kb on - strand at 4295.568 kb on + strand at 4295.569 kb on - strand at 4295.569 kb on - strand at 4295.569 kb on - strand at 4295.571 kb on - strand at 4295.598 kb on - strand at 4295.620 kb on + strand at 4295.620 kb on + strand at 4295.620 kb on + strand at 4295.635 kb on - strand at 4295.635 kb on - strand at 4295.675 kb on + strand at 4295.676 kb on - strand at 4295.682 kb on + strand at 4295.682 kb on + strand at 4295.683 kb on - strand at 4295.683 kb on - strand at 4295.683 kb on - strand at 4295.684 kb on + strand at 4295.684 kb on + strand at 4295.684 kb on + strand at 4295.684 kb on + strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.685 kb on - strand at 4295.690 kb on + strand at 4295.690 kb on + strand at 4295.691 kb on - strand at 4295.872 kb on + strand, within IAI46_20325 at 4295.872 kb on + strand, within IAI46_20325 at 4295.873 kb on - strand, within IAI46_20325 at 4295.874 kb on + strand, within IAI46_20325 at 4295.875 kb on - strand, within IAI46_20325 at 4296.042 kb on + strand, within IAI46_20325 at 4296.179 kb on - strand, within IAI46_20325 at 4296.201 kb on + strand, within IAI46_20325 at 4296.201 kb on + strand, within IAI46_20325 at 4296.201 kb on + strand, within IAI46_20325 at 4296.286 kb on + strand, within IAI46_20325 at 4296.287 kb on - strand, within IAI46_20325 at 4296.287 kb on - strand, within IAI46_20325 at 4296.352 kb on + strand, within IAI46_20325 at 4296.352 kb on + strand, within IAI46_20325 at 4296.352 kb on + strand, within IAI46_20325 at 4296.352 kb on + strand, within IAI46_20325 at 4296.352 kb on + strand, within IAI46_20325 at 4296.353 kb on - strand, within IAI46_20325 at 4296.353 kb on - strand, within IAI46_20325 at 4296.353 kb on - strand, within IAI46_20325 at 4296.353 kb on - strand, within IAI46_20325 at 4296.353 kb on - strand, within IAI46_20325 at 4296.354 kb on + strand, within IAI46_20325 at 4296.354 kb on + strand, within IAI46_20325 at 4296.355 kb on - strand, within IAI46_20325 at 4296.355 kb on - strand, within IAI46_20325 at 4296.464 kb on + strand at 4296.574 kb on - strand, within IAI46_20330 at 4296.776 kb on + strand, within IAI46_20330 at 4296.777 kb on - strand, within IAI46_20330 at 4296.777 kb on - strand, within IAI46_20330 at 4296.805 kb on + strand, within IAI46_20330 at 4296.888 kb on - strand, within IAI46_20330 at 4297.002 kb on + strand, within IAI46_20330 at 4297.003 kb on - strand, within IAI46_20330 at 4297.003 kb on - strand, within IAI46_20330 at 4297.003 kb on - strand, within IAI46_20330 at 4297.051 kb on - strand, within IAI46_20330 at 4297.052 kb on + strand, within IAI46_20330 at 4297.052 kb on + strand, within IAI46_20330 at 4297.053 kb on - strand, within IAI46_20330 at 4297.053 kb on - strand, within IAI46_20330 at 4297.083 kb on - strand, within IAI46_20330 at 4297.091 kb on + strand, within IAI46_20330 at 4297.092 kb on - strand, within IAI46_20330 at 4297.092 kb on - strand, within IAI46_20330 at 4297.092 kb on - strand, within IAI46_20330 at 4297.252 kb on + strand, within IAI46_20330 at 4297.427 kb on + strand, within IAI46_20330 at 4297.445 kb on + strand, within IAI46_20330 at 4297.446 kb on - strand, within IAI46_20330 at 4297.561 kb on - strand at 4297.656 kb on + strand, within IAI46_20335 at 4297.656 kb on + strand, within IAI46_20335 at 4297.656 kb on + strand, within IAI46_20335 at 4297.656 kb on + strand, within IAI46_20335 at 4297.656 kb on + strand, within IAI46_20335 at 4297.657 kb on - strand, within IAI46_20335 at 4297.712 kb on + strand, within IAI46_20335 at 4297.712 kb on + strand, within IAI46_20335 at 4297.713 kb on - strand, within IAI46_20335 at 4297.746 kb on + strand, within IAI46_20335 at 4297.747 kb on - strand, within IAI46_20335 at 4297.871 kb on + strand, within IAI46_20335 at 4297.872 kb on - strand, within IAI46_20335 at 4297.872 kb on - strand, within IAI46_20335 at 4297.874 kb on + strand, within IAI46_20335 at 4297.874 kb on + strand, within IAI46_20335 at 4297.875 kb on - strand, within IAI46_20335 at 4297.907 kb on + strand, within IAI46_20335 at 4297.907 kb on + strand, within IAI46_20335 at 4297.959 kb on - strand at 4297.959 kb on - strand at 4297.962 kb on + strand at 4297.963 kb on - strand at 4297.963 kb on - strand at 4297.963 kb on - strand at 4298.082 kb on + strand at 4298.116 kb on - strand, within IAI46_20340 at 4298.116 kb on - strand, within IAI46_20340 at 4298.116 kb on - strand, within IAI46_20340 at 4298.205 kb on - strand, within IAI46_20340 at 4298.283 kb on + strand, within IAI46_20340 at 4298.284 kb on - strand, within IAI46_20340 at 4298.318 kb on - strand, within IAI46_20340 at 4298.342 kb on + strand, within IAI46_20340 at 4298.435 kb on - strand, within IAI46_20340 at 4298.446 kb on - strand, within IAI46_20340
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 4,295,476 + -0.0 4,295,477 - +1.1 4,295,477 - -0.3 4,295,495 + +0.8 4,295,495 + -0.0 4,295,526 - +0.8 4,295,529 - -0.0 4,295,564 - +0.8 4,295,568 + -1.9 4,295,569 - +0.2 4,295,569 - +0.5 4,295,569 - -2.3 4,295,571 - +0.5 4,295,598 - -2.0 4,295,620 + +0.0 4,295,620 + +1.3 4,295,620 + +0.1 4,295,635 - +0.5 4,295,635 - -1.3 4,295,675 + +0.3 4,295,676 - -0.8 4,295,682 + +0.2 4,295,682 + -1.2 4,295,683 - -0.6 4,295,683 - +1.5 4,295,683 - -0.4 4,295,684 + +0.6 4,295,684 + +1.2 4,295,684 + -1.0 4,295,684 + +1.6 4,295,685 - +1.0 4,295,685 - +0.2 4,295,685 - +0.4 4,295,685 - +0.1 4,295,685 - +0.5 4,295,685 - -1.0 4,295,685 - +0.9 4,295,685 - -0.0 4,295,690 + -1.2 4,295,690 + +0.5 4,295,691 - -0.6 4,295,872 + IAI46_20325 0.26 -0.6 4,295,872 + IAI46_20325 0.26 +1.4 4,295,873 - IAI46_20325 0.26 +0.1 4,295,874 + IAI46_20325 0.26 +0.1 4,295,875 - IAI46_20325 0.26 -0.9 4,296,042 + IAI46_20325 0.48 +1.0 4,296,179 - IAI46_20325 0.66 -0.4 4,296,201 + IAI46_20325 0.69 +1.3 4,296,201 + IAI46_20325 0.69 -0.3 4,296,201 + IAI46_20325 0.69 -0.0 4,296,286 + IAI46_20325 0.81 -0.3 4,296,287 - IAI46_20325 0.81 -0.4 4,296,287 - IAI46_20325 0.81 +0.0 4,296,352 + IAI46_20325 0.89 -0.0 4,296,352 + IAI46_20325 0.89 -0.9 4,296,352 + IAI46_20325 0.89 +0.9 4,296,352 + IAI46_20325 0.89 +0.9 4,296,352 + IAI46_20325 0.89 -0.5 4,296,353 - IAI46_20325 0.89 -0.9 4,296,353 - IAI46_20325 0.89 -0.4 4,296,353 - IAI46_20325 0.89 -0.1 4,296,353 - IAI46_20325 0.89 -0.4 4,296,353 - IAI46_20325 0.89 -0.2 4,296,354 + IAI46_20325 0.90 +0.9 4,296,354 + IAI46_20325 0.90 +0.1 4,296,355 - IAI46_20325 0.90 +0.7 4,296,355 - IAI46_20325 0.90 +0.9 4,296,464 + -0.6 4,296,574 - IAI46_20330 0.10 -0.1 4,296,776 + IAI46_20330 0.28 +0.3 4,296,777 - IAI46_20330 0.28 -0.6 4,296,777 - IAI46_20330 0.28 +0.3 4,296,805 + IAI46_20330 0.31 +0.3 4,296,888 - IAI46_20330 0.38 -1.7 4,297,002 + IAI46_20330 0.49 -0.3 4,297,003 - IAI46_20330 0.49 +0.5 4,297,003 - IAI46_20330 0.49 -0.5 4,297,003 - IAI46_20330 0.49 -0.1 4,297,051 - IAI46_20330 0.53 +0.3 4,297,052 + IAI46_20330 0.53 -0.8 4,297,052 + IAI46_20330 0.53 +1.1 4,297,053 - IAI46_20330 0.53 -0.2 4,297,053 - IAI46_20330 0.53 -0.4 4,297,083 - IAI46_20330 0.56 -0.3 4,297,091 + IAI46_20330 0.57 +0.4 4,297,092 - IAI46_20330 0.57 +0.2 4,297,092 - IAI46_20330 0.57 +0.2 4,297,092 - IAI46_20330 0.57 +0.3 4,297,252 + IAI46_20330 0.71 -0.5 4,297,427 + IAI46_20330 0.87 -0.2 4,297,445 + IAI46_20330 0.89 +0.1 4,297,446 - IAI46_20330 0.89 -0.0 4,297,561 - -1.1 4,297,656 + IAI46_20335 0.24 -0.3 4,297,656 + IAI46_20335 0.24 -0.9 4,297,656 + IAI46_20335 0.24 -1.3 4,297,656 + IAI46_20335 0.24 +0.1 4,297,656 + IAI46_20335 0.24 -1.3 4,297,657 - IAI46_20335 0.25 +0.1 4,297,712 + IAI46_20335 0.39 -0.5 4,297,712 + IAI46_20335 0.39 -0.7 4,297,713 - IAI46_20335 0.39 -0.7 4,297,746 + IAI46_20335 0.47 +0.4 4,297,747 - IAI46_20335 0.47 -1.0 4,297,871 + IAI46_20335 0.79 +0.2 4,297,872 - IAI46_20335 0.79 -0.2 4,297,872 - IAI46_20335 0.79 +1.2 4,297,874 + IAI46_20335 0.80 +0.0 4,297,874 + IAI46_20335 0.80 +0.5 4,297,875 - IAI46_20335 0.80 -0.7 4,297,907 + IAI46_20335 0.88 +0.1 4,297,907 + IAI46_20335 0.88 +0.8 4,297,959 - -1.2 4,297,959 - +0.1 4,297,962 + +0.5 4,297,963 - +0.6 4,297,963 - -0.5 4,297,963 - -0.3 4,298,082 + -1.3 4,298,116 - IAI46_20340 0.12 -0.1 4,298,116 - IAI46_20340 0.12 -2.4 4,298,116 - IAI46_20340 0.12 +0.3 4,298,205 - IAI46_20340 0.22 +0.2 4,298,283 + IAI46_20340 0.30 +0.2 4,298,284 - IAI46_20340 0.30 +0.5 4,298,318 - IAI46_20340 0.34 -0.8 4,298,342 + IAI46_20340 0.36 +0.4 4,298,435 - IAI46_20340 0.47 -0.1 4,298,446 - IAI46_20340 0.48 -0.2
Or see this region's nucleotide sequence