Strain Fitness in Serratia liquefaciens MT49 around IAI46_20005

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20000 and IAI46_20005 are separated by 17 nucleotidesIAI46_20005 and IAI46_20010 are separated by 72 nucleotides IAI46_20000: IAI46_20000 - multidrug efflux MFS transporter periplasmic adaptor subunit EmrA, at 4,216,921 to 4,218,093 _20000 IAI46_20005: IAI46_20005 - multidrug efflux MFS transporter permease subunit EmrB, at 4,218,111 to 4,219,646 _20005 IAI46_20010: IAI46_20010 - tRNA/rRNA methyltransferase, at 4,219,719 to 4,220,819 _20010 Position (kb) 4218 4219 4220Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4217.157 kb on + strand, within IAI46_20000at 4217.164 kb on + strand, within IAI46_20000at 4217.165 kb on - strand, within IAI46_20000at 4217.250 kb on + strand, within IAI46_20000at 4217.294 kb on - strand, within IAI46_20000at 4217.461 kb on + strand, within IAI46_20000at 4217.461 kb on + strand, within IAI46_20000at 4217.461 kb on + strand, within IAI46_20000at 4217.462 kb on - strand, within IAI46_20000at 4217.462 kb on - strand, within IAI46_20000at 4217.483 kb on + strand, within IAI46_20000at 4217.483 kb on + strand, within IAI46_20000at 4217.484 kb on - strand, within IAI46_20000at 4217.612 kb on + strand, within IAI46_20000at 4217.716 kb on - strand, within IAI46_20000at 4217.716 kb on - strand, within IAI46_20000at 4217.716 kb on - strand, within IAI46_20000at 4217.742 kb on - strand, within IAI46_20000at 4217.755 kb on + strand, within IAI46_20000at 4217.883 kb on - strand, within IAI46_20000at 4217.886 kb on + strand, within IAI46_20000at 4217.886 kb on + strand, within IAI46_20000at 4217.886 kb on + strand, within IAI46_20000at 4217.886 kb on + strand, within IAI46_20000at 4217.887 kb on - strand, within IAI46_20000at 4217.887 kb on - strand, within IAI46_20000at 4218.108 kb on - strandat 4218.180 kb on - strandat 4218.532 kb on + strand, within IAI46_20005at 4218.533 kb on - strand, within IAI46_20005at 4218.585 kb on + strand, within IAI46_20005at 4218.585 kb on + strand, within IAI46_20005at 4218.585 kb on + strand, within IAI46_20005at 4218.586 kb on - strand, within IAI46_20005at 4218.588 kb on - strand, within IAI46_20005at 4218.600 kb on + strand, within IAI46_20005at 4218.600 kb on + strand, within IAI46_20005at 4218.601 kb on - strand, within IAI46_20005at 4218.601 kb on - strand, within IAI46_20005at 4218.743 kb on + strand, within IAI46_20005at 4218.745 kb on + strand, within IAI46_20005at 4218.935 kb on + strand, within IAI46_20005at 4218.935 kb on + strand, within IAI46_20005at 4218.949 kb on - strand, within IAI46_20005at 4218.949 kb on - strand, within IAI46_20005at 4218.957 kb on + strand, within IAI46_20005at 4218.976 kb on + strand, within IAI46_20005at 4219.003 kb on - strand, within IAI46_20005at 4219.003 kb on - strand, within IAI46_20005at 4219.010 kb on + strand, within IAI46_20005at 4219.011 kb on - strand, within IAI46_20005at 4219.133 kb on + strand, within IAI46_20005at 4219.134 kb on - strand, within IAI46_20005at 4219.134 kb on - strand, within IAI46_20005at 4219.134 kb on - strand, within IAI46_20005at 4219.137 kb on + strand, within IAI46_20005at 4219.137 kb on + strand, within IAI46_20005at 4219.137 kb on + strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.138 kb on - strand, within IAI46_20005at 4219.152 kb on + strand, within IAI46_20005at 4219.152 kb on + strand, within IAI46_20005at 4219.164 kb on + strand, within IAI46_20005at 4219.166 kb on + strand, within IAI46_20005at 4219.166 kb on + strand, within IAI46_20005at 4219.262 kb on + strand, within IAI46_20005at 4219.422 kb on + strand, within IAI46_20005at 4219.494 kb on + strandat 4219.494 kb on + strandat 4219.495 kb on - strandat 4219.692 kb on + strandat 4219.694 kb on + strandat 4219.694 kb on + strandat 4219.720 kb on + strandat 4219.720 kb on + strandat 4219.720 kb on + strandat 4219.720 kb on + strandat 4219.774 kb on - strandat 4219.788 kb on + strandat 4219.788 kb on + strandat 4219.789 kb on - strandat 4219.820 kb on + strandat 4219.820 kb on + strandat 4219.821 kb on - strandat 4219.899 kb on - strand, within IAI46_20010at 4219.922 kb on + strand, within IAI46_20010at 4219.923 kb on - strand, within IAI46_20010at 4219.928 kb on + strand, within IAI46_20010at 4219.928 kb on + strand, within IAI46_20010at 4219.928 kb on + strand, within IAI46_20010at 4219.928 kb on + strand, within IAI46_20010at 4219.929 kb on - strand, within IAI46_20010at 4219.929 kb on - strand, within IAI46_20010at 4220.034 kb on - strand, within IAI46_20010at 4220.236 kb on - strand, within IAI46_20010at 4220.236 kb on - strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.286 kb on + strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.287 kb on - strand, within IAI46_20010at 4220.297 kb on - strand, within IAI46_20010at 4220.558 kb on - strand, within IAI46_20010at 4220.558 kb on - strand, within IAI46_20010

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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4,217,157 + IAI46_20000 0.20 +0.5
4,217,164 + IAI46_20000 0.21 +0.6
4,217,165 - IAI46_20000 0.21 +1.1
4,217,250 + IAI46_20000 0.28 -0.3
4,217,294 - IAI46_20000 0.32 +0.3
4,217,461 + IAI46_20000 0.46 -0.6
4,217,461 + IAI46_20000 0.46 -0.0
4,217,461 + IAI46_20000 0.46 +1.3
4,217,462 - IAI46_20000 0.46 +0.8
4,217,462 - IAI46_20000 0.46 -0.5
4,217,483 + IAI46_20000 0.48 +0.1
4,217,483 + IAI46_20000 0.48 +0.6
4,217,484 - IAI46_20000 0.48 -0.3
4,217,612 + IAI46_20000 0.59 +2.8
4,217,716 - IAI46_20000 0.68 +0.3
4,217,716 - IAI46_20000 0.68 -0.5
4,217,716 - IAI46_20000 0.68 +0.8
4,217,742 - IAI46_20000 0.70 +0.6
4,217,755 + IAI46_20000 0.71 +1.1
4,217,883 - IAI46_20000 0.82 -0.9
4,217,886 + IAI46_20000 0.82 +0.3
4,217,886 + IAI46_20000 0.82 +0.7
4,217,886 + IAI46_20000 0.82 +0.1
4,217,886 + IAI46_20000 0.82 -0.7
4,217,887 - IAI46_20000 0.82 -0.8
4,217,887 - IAI46_20000 0.82 +0.3
4,218,108 - +0.4
4,218,180 - +0.6
4,218,532 + IAI46_20005 0.27 +0.7
4,218,533 - IAI46_20005 0.27 -0.3
4,218,585 + IAI46_20005 0.31 -0.9
4,218,585 + IAI46_20005 0.31 -1.5
4,218,585 + IAI46_20005 0.31 +1.2
4,218,586 - IAI46_20005 0.31 -1.3
4,218,588 - IAI46_20005 0.31 +0.1
4,218,600 + IAI46_20005 0.32 +0.3
4,218,600 + IAI46_20005 0.32 -0.4
4,218,601 - IAI46_20005 0.32 +0.6
4,218,601 - IAI46_20005 0.32 -0.0
4,218,743 + IAI46_20005 0.41 -0.6
4,218,745 + IAI46_20005 0.41 -0.5
4,218,935 + IAI46_20005 0.54 -0.6
4,218,935 + IAI46_20005 0.54 +0.0
4,218,949 - IAI46_20005 0.55 -0.6
4,218,949 - IAI46_20005 0.55 -0.2
4,218,957 + IAI46_20005 0.55 +0.4
4,218,976 + IAI46_20005 0.56 +1.5
4,219,003 - IAI46_20005 0.58 +1.1
4,219,003 - IAI46_20005 0.58 +1.3
4,219,010 + IAI46_20005 0.59 +0.5
4,219,011 - IAI46_20005 0.59 +1.5
4,219,133 + IAI46_20005 0.67 -0.4
4,219,134 - IAI46_20005 0.67 +0.5
4,219,134 - IAI46_20005 0.67 -0.5
4,219,134 - IAI46_20005 0.67 +1.0
4,219,137 + IAI46_20005 0.67 +0.6
4,219,137 + IAI46_20005 0.67 -1.0
4,219,137 + IAI46_20005 0.67 +0.3
4,219,138 - IAI46_20005 0.67 -0.6
4,219,138 - IAI46_20005 0.67 +0.7
4,219,138 - IAI46_20005 0.67 -0.5
4,219,138 - IAI46_20005 0.67 +0.1
4,219,138 - IAI46_20005 0.67 +1.2
4,219,138 - IAI46_20005 0.67 +0.0
4,219,138 - IAI46_20005 0.67 -0.2
4,219,138 - IAI46_20005 0.67 +0.7
4,219,152 + IAI46_20005 0.68 +0.2
4,219,152 + IAI46_20005 0.68 -0.2
4,219,164 + IAI46_20005 0.69 -1.0
4,219,166 + IAI46_20005 0.69 -0.2
4,219,166 + IAI46_20005 0.69 +0.5
4,219,262 + IAI46_20005 0.75 -0.6
4,219,422 + IAI46_20005 0.85 -0.3
4,219,494 + -0.6
4,219,494 + +0.2
4,219,495 - -0.5
4,219,692 + +1.6
4,219,694 + +0.2
4,219,694 + -2.0
4,219,720 + -1.0
4,219,720 + -0.8
4,219,720 + -0.0
4,219,720 + -2.5
4,219,774 - -0.3
4,219,788 + +0.9
4,219,788 + +0.1
4,219,789 - +0.4
4,219,820 + +0.7
4,219,820 + +2.0
4,219,821 - +0.1
4,219,899 - IAI46_20010 0.16 +0.3
4,219,922 + IAI46_20010 0.18 +0.7
4,219,923 - IAI46_20010 0.19 +0.1
4,219,928 + IAI46_20010 0.19 -0.3
4,219,928 + IAI46_20010 0.19 -1.2
4,219,928 + IAI46_20010 0.19 +0.8
4,219,928 + IAI46_20010 0.19 -0.2
4,219,929 - IAI46_20010 0.19 +0.4
4,219,929 - IAI46_20010 0.19 -0.7
4,220,034 - IAI46_20010 0.29 -0.4
4,220,236 - IAI46_20010 0.47 +0.2
4,220,236 - IAI46_20010 0.47 -0.2
4,220,286 + IAI46_20010 0.51 +0.0
4,220,286 + IAI46_20010 0.51 +0.3
4,220,286 + IAI46_20010 0.51 -1.4
4,220,286 + IAI46_20010 0.51 +0.1
4,220,287 - IAI46_20010 0.52 +0.6
4,220,287 - IAI46_20010 0.52 -0.8
4,220,287 - IAI46_20010 0.52 -0.1
4,220,297 - IAI46_20010 0.52 +0.2
4,220,558 - IAI46_20010 0.76 -1.4
4,220,558 - IAI46_20010 0.76 -2.0

Or see this region's nucleotide sequence