Strain Fitness in Serratia liquefaciens MT49 around IAI46_19575

Experiment: Nickel (II) chloride 80 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_19565 and IAI46_19570 are separated by 13 nucleotidesIAI46_19570 and IAI46_19575 overlap by 4 nucleotidesIAI46_19575 and IAI46_19580 overlap by 1 nucleotidesIAI46_19580 and IAI46_19585 are separated by 30 nucleotides IAI46_19565: IAI46_19565 - hypothetical protein, at 4,136,011 to 4,136,832 _19565 IAI46_19570: IAI46_19570 - SoxR-reducing system protein RseC, at 4,136,846 to 4,137,322 _19570 IAI46_19575: IAI46_19575 - sigma-E factor regulatory protein RseB, at 4,137,319 to 4,138,278 _19575 IAI46_19580: IAI46_19580 - anti-sigma-E factor RseA, at 4,138,278 to 4,138,931 _19580 IAI46_19585: IAI46_19585 - RNA polymerase sigma factor RpoE, at 4,138,962 to 4,139,537 _19585 Position (kb) 4137 4138 4139Strain fitness (log2 ratio) -2 -1 0 1 2at 4136.325 kb on + strand, within IAI46_19565at 4136.325 kb on + strand, within IAI46_19565at 4136.326 kb on - strand, within IAI46_19565at 4136.372 kb on + strand, within IAI46_19565at 4136.372 kb on + strand, within IAI46_19565at 4136.373 kb on - strand, within IAI46_19565at 4136.458 kb on - strand, within IAI46_19565at 4136.458 kb on - strand, within IAI46_19565at 4136.458 kb on - strand, within IAI46_19565at 4136.458 kb on - strand, within IAI46_19565at 4136.460 kb on + strand, within IAI46_19565at 4136.506 kb on + strand, within IAI46_19565at 4136.507 kb on - strand, within IAI46_19565at 4136.533 kb on + strand, within IAI46_19565at 4136.567 kb on + strand, within IAI46_19565at 4136.568 kb on - strand, within IAI46_19565at 4136.734 kb on - strand, within IAI46_19565at 4136.734 kb on - strand, within IAI46_19565at 4136.738 kb on + strand, within IAI46_19565at 4136.783 kb on + strandat 4136.783 kb on + strandat 4136.784 kb on - strandat 4136.790 kb on + strandat 4136.790 kb on + strandat 4136.790 kb on + strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.791 kb on - strandat 4136.798 kb on - strandat 4136.798 kb on - strandat 4136.815 kb on + strandat 4136.922 kb on + strand, within IAI46_19570at 4136.923 kb on - strand, within IAI46_19570at 4136.969 kb on - strand, within IAI46_19570at 4137.030 kb on + strand, within IAI46_19570at 4137.078 kb on + strand, within IAI46_19570at 4137.078 kb on + strand, within IAI46_19570at 4137.164 kb on + strand, within IAI46_19570at 4137.164 kb on + strand, within IAI46_19570at 4137.165 kb on - strand, within IAI46_19570at 4137.331 kb on + strandat 4137.331 kb on + strandat 4137.332 kb on - strandat 4137.345 kb on + strandat 4137.346 kb on - strandat 4137.357 kb on + strandat 4137.358 kb on - strandat 4137.358 kb on - strandat 4137.397 kb on - strandat 4137.452 kb on + strand, within IAI46_19575at 4137.453 kb on - strand, within IAI46_19575at 4137.453 kb on - strand, within IAI46_19575at 4137.487 kb on - strand, within IAI46_19575at 4137.505 kb on + strand, within IAI46_19575at 4137.505 kb on + strand, within IAI46_19575at 4137.518 kb on + strand, within IAI46_19575at 4137.519 kb on - strand, within IAI46_19575at 4137.559 kb on - strand, within IAI46_19575at 4137.694 kb on + strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.695 kb on - strand, within IAI46_19575at 4137.787 kb on - strand, within IAI46_19575at 4137.805 kb on + strand, within IAI46_19575at 4137.805 kb on + strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.806 kb on - strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.807 kb on + strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.808 kb on - strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.809 kb on + strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.810 kb on - strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.813 kb on + strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.814 kb on - strand, within IAI46_19575at 4137.815 kb on + strand, within IAI46_19575at 4137.815 kb on + strand, within IAI46_19575at 4137.900 kb on - strand, within IAI46_19575at 4137.903 kb on - strand, within IAI46_19575at 4137.929 kb on + strand, within IAI46_19575at 4137.930 kb on - strand, within IAI46_19575at 4137.958 kb on - strand, within IAI46_19575at 4137.976 kb on - strand, within IAI46_19575at 4138.024 kb on + strand, within IAI46_19575at 4138.025 kb on - strand, within IAI46_19575at 4138.050 kb on + strand, within IAI46_19575at 4138.050 kb on + strand, within IAI46_19575at 4138.051 kb on - strand, within IAI46_19575at 4138.051 kb on - strand, within IAI46_19575at 4138.134 kb on + strand, within IAI46_19575at 4138.134 kb on + strand, within IAI46_19575at 4138.148 kb on + strand, within IAI46_19575at 4138.149 kb on - strand, within IAI46_19575at 4138.230 kb on - strandat 4138.250 kb on - strandat 4138.250 kb on - strandat 4138.279 kb on + strandat 4138.280 kb on - strandat 4138.297 kb on - strandat 4138.390 kb on + strand, within IAI46_19580at 4138.391 kb on - strand, within IAI46_19580at 4138.404 kb on - strand, within IAI46_19580at 4138.404 kb on - strand, within IAI46_19580at 4138.964 kb on - strandat 4138.989 kb on - strandat 4138.991 kb on + strandat 4138.992 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
remove
4,136,325 + IAI46_19565 0.38 +0.3
4,136,325 + IAI46_19565 0.38 +0.3
4,136,326 - IAI46_19565 0.38 +0.6
4,136,372 + IAI46_19565 0.44 -0.7
4,136,372 + IAI46_19565 0.44 +0.1
4,136,373 - IAI46_19565 0.44 +0.6
4,136,458 - IAI46_19565 0.54 -0.1
4,136,458 - IAI46_19565 0.54 -2.1
4,136,458 - IAI46_19565 0.54 +0.1
4,136,458 - IAI46_19565 0.54 +0.4
4,136,460 + IAI46_19565 0.55 -0.8
4,136,506 + IAI46_19565 0.60 -0.2
4,136,507 - IAI46_19565 0.60 +0.7
4,136,533 + IAI46_19565 0.64 -1.3
4,136,567 + IAI46_19565 0.68 -0.4
4,136,568 - IAI46_19565 0.68 +1.6
4,136,734 - IAI46_19565 0.88 -0.1
4,136,734 - IAI46_19565 0.88 +0.9
4,136,738 + IAI46_19565 0.88 +0.3
4,136,783 + +0.3
4,136,783 + +1.2
4,136,784 - +0.4
4,136,790 + -0.4
4,136,790 + -0.5
4,136,790 + +0.6
4,136,791 - +1.4
4,136,791 - +1.0
4,136,791 - +0.6
4,136,791 - -0.0
4,136,791 - -0.7
4,136,791 - +0.5
4,136,791 - +0.1
4,136,798 - -0.4
4,136,798 - -0.1
4,136,815 + +0.9
4,136,922 + IAI46_19570 0.16 -0.5
4,136,923 - IAI46_19570 0.16 -0.1
4,136,969 - IAI46_19570 0.26 -0.6
4,137,030 + IAI46_19570 0.39 -0.7
4,137,078 + IAI46_19570 0.49 -0.6
4,137,078 + IAI46_19570 0.49 -1.2
4,137,164 + IAI46_19570 0.67 -0.8
4,137,164 + IAI46_19570 0.67 +1.0
4,137,165 - IAI46_19570 0.67 -0.0
4,137,331 + -0.0
4,137,331 + +1.7
4,137,332 - -0.8
4,137,345 + -0.0
4,137,346 - -0.4
4,137,357 + -2.2
4,137,358 - +0.2
4,137,358 - +0.9
4,137,397 - +2.0
4,137,452 + IAI46_19575 0.14 +0.3
4,137,453 - IAI46_19575 0.14 +0.6
4,137,453 - IAI46_19575 0.14 +0.5
4,137,487 - IAI46_19575 0.17 -0.4
4,137,505 + IAI46_19575 0.19 -1.1
4,137,505 + IAI46_19575 0.19 -0.3
4,137,518 + IAI46_19575 0.21 -0.0
4,137,519 - IAI46_19575 0.21 -1.0
4,137,559 - IAI46_19575 0.25 +0.3
4,137,694 + IAI46_19575 0.39 +0.6
4,137,695 - IAI46_19575 0.39 +1.2
4,137,695 - IAI46_19575 0.39 +0.8
4,137,695 - IAI46_19575 0.39 +0.4
4,137,695 - IAI46_19575 0.39 +0.3
4,137,787 - IAI46_19575 0.49 +0.1
4,137,805 + IAI46_19575 0.51 -0.7
4,137,805 + IAI46_19575 0.51 -0.2
4,137,806 - IAI46_19575 0.51 -0.1
4,137,806 - IAI46_19575 0.51 +1.3
4,137,806 - IAI46_19575 0.51 +0.8
4,137,806 - IAI46_19575 0.51 +0.0
4,137,806 - IAI46_19575 0.51 +0.3
4,137,807 + IAI46_19575 0.51 -0.4
4,137,807 + IAI46_19575 0.51 -0.2
4,137,807 + IAI46_19575 0.51 -0.4
4,137,808 - IAI46_19575 0.51 +0.2
4,137,808 - IAI46_19575 0.51 +1.6
4,137,808 - IAI46_19575 0.51 +0.3
4,137,808 - IAI46_19575 0.51 -0.1
4,137,808 - IAI46_19575 0.51 -0.3
4,137,809 + IAI46_19575 0.51 -0.6
4,137,809 + IAI46_19575 0.51 +1.0
4,137,809 + IAI46_19575 0.51 -1.5
4,137,809 + IAI46_19575 0.51 -0.1
4,137,809 + IAI46_19575 0.51 +0.6
4,137,809 + IAI46_19575 0.51 +0.6
4,137,809 + IAI46_19575 0.51 +1.2
4,137,809 + IAI46_19575 0.51 +0.1
4,137,809 + IAI46_19575 0.51 -0.1
4,137,809 + IAI46_19575 0.51 +0.6
4,137,809 + IAI46_19575 0.51 +1.2
4,137,810 - IAI46_19575 0.51 -1.0
4,137,810 - IAI46_19575 0.51 +0.6
4,137,810 - IAI46_19575 0.51 +1.2
4,137,810 - IAI46_19575 0.51 -0.2
4,137,810 - IAI46_19575 0.51 -0.7
4,137,810 - IAI46_19575 0.51 +1.0
4,137,810 - IAI46_19575 0.51 +2.6
4,137,810 - IAI46_19575 0.51 +0.3
4,137,810 - IAI46_19575 0.51 +0.3
4,137,810 - IAI46_19575 0.51 -0.2
4,137,810 - IAI46_19575 0.51 -0.9
4,137,810 - IAI46_19575 0.51 -0.5
4,137,810 - IAI46_19575 0.51 +1.3
4,137,810 - IAI46_19575 0.51 -0.2
4,137,810 - IAI46_19575 0.51 -0.9
4,137,813 + IAI46_19575 0.51 -0.0
4,137,813 + IAI46_19575 0.51 -0.6
4,137,813 + IAI46_19575 0.51 +0.0
4,137,814 - IAI46_19575 0.52 +0.3
4,137,814 - IAI46_19575 0.52 +0.8
4,137,814 - IAI46_19575 0.52 -0.0
4,137,814 - IAI46_19575 0.52 +0.0
4,137,814 - IAI46_19575 0.52 -0.7
4,137,814 - IAI46_19575 0.52 +1.3
4,137,814 - IAI46_19575 0.52 -0.5
4,137,814 - IAI46_19575 0.52 +0.3
4,137,815 + IAI46_19575 0.52 -0.3
4,137,815 + IAI46_19575 0.52 +0.7
4,137,900 - IAI46_19575 0.61 +0.6
4,137,903 - IAI46_19575 0.61 +0.8
4,137,929 + IAI46_19575 0.64 +0.3
4,137,930 - IAI46_19575 0.64 +0.8
4,137,958 - IAI46_19575 0.67 +0.5
4,137,976 - IAI46_19575 0.68 -0.4
4,138,024 + IAI46_19575 0.73 -1.2
4,138,025 - IAI46_19575 0.74 -1.2
4,138,050 + IAI46_19575 0.76 -0.0
4,138,050 + IAI46_19575 0.76 -0.1
4,138,051 - IAI46_19575 0.76 +0.3
4,138,051 - IAI46_19575 0.76 -0.3
4,138,134 + IAI46_19575 0.85 -0.5
4,138,134 + IAI46_19575 0.85 -0.4
4,138,148 + IAI46_19575 0.86 +1.6
4,138,149 - IAI46_19575 0.86 -0.9
4,138,230 - +0.5
4,138,250 - +0.6
4,138,250 - +0.6
4,138,279 + +0.5
4,138,280 - -0.5
4,138,297 - -0.3
4,138,390 + IAI46_19580 0.17 +1.2
4,138,391 - IAI46_19580 0.17 -0.1
4,138,404 - IAI46_19580 0.19 +1.5
4,138,404 - IAI46_19580 0.19 +2.7
4,138,964 - +0.4
4,138,989 - -0.8
4,138,991 + +1.1
4,138,992 - +1.1

Or see this region's nucleotide sequence