Strain Fitness in Serratia liquefaciens MT49 around IAI46_16690

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16685 and IAI46_16690 are separated by 325 nucleotidesIAI46_16690 and IAI46_16695 overlap by 4 nucleotidesIAI46_16695 and IAI46_16700 overlap by 4 nucleotides IAI46_16685: IAI46_16685 - LLM class flavin-dependent oxidoreductase, at 3,495,275 to 3,496,297 _16685 IAI46_16690: IAI46_16690 - thiaminase II, at 3,496,623 to 3,497,303 _16690 IAI46_16695: IAI46_16695 - ABC transporter ATP-binding protein, at 3,497,300 to 3,498,055 _16695 IAI46_16700: IAI46_16700 - ABC transporter permease, at 3,498,052 to 3,498,819 _16700 Position (kb) 3496 3497 3498Strain fitness (log2 ratio) -2 -1 0 1 2at 3495.827 kb on - strand, within IAI46_16685at 3495.827 kb on - strand, within IAI46_16685at 3495.874 kb on + strand, within IAI46_16685at 3495.919 kb on + strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3495.920 kb on - strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.030 kb on + strand, within IAI46_16685at 3496.031 kb on - strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.032 kb on + strand, within IAI46_16685at 3496.033 kb on - strand, within IAI46_16685at 3496.033 kb on - strand, within IAI46_16685at 3496.310 kb on - strandat 3496.318 kb on + strandat 3496.331 kb on - strandat 3496.365 kb on + strandat 3496.397 kb on + strandat 3496.440 kb on - strandat 3496.448 kb on + strandat 3496.450 kb on + strandat 3496.628 kb on + strandat 3496.636 kb on + strandat 3496.695 kb on + strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.696 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.777 kb on - strand, within IAI46_16690at 3496.806 kb on + strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.975 kb on - strand, within IAI46_16690at 3496.983 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.136 kb on + strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.137 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690at 3497.165 kb on - strand, within IAI46_16690at 3497.545 kb on + strand, within IAI46_16695at 3497.552 kb on + strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.553 kb on - strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.554 kb on + strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.555 kb on - strand, within IAI46_16695at 3497.603 kb on - strand, within IAI46_16695at 3497.687 kb on + strand, within IAI46_16695at 3497.741 kb on - strand, within IAI46_16695at 3497.756 kb on + strand, within IAI46_16695at 3497.861 kb on - strand, within IAI46_16695at 3498.214 kb on + strand, within IAI46_16700at 3498.278 kb on + strand, within IAI46_16700

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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3,495,827 - IAI46_16685 0.54 -2.3
3,495,827 - IAI46_16685 0.54 -0.3
3,495,874 + IAI46_16685 0.59 +0.7
3,495,919 + IAI46_16685 0.63 -2.2
3,495,920 - IAI46_16685 0.63 -0.6
3,495,920 - IAI46_16685 0.63 +0.8
3,495,920 - IAI46_16685 0.63 -0.0
3,496,030 + IAI46_16685 0.74 +0.1
3,496,030 + IAI46_16685 0.74 -0.4
3,496,030 + IAI46_16685 0.74 -0.7
3,496,031 - IAI46_16685 0.74 +0.2
3,496,032 + IAI46_16685 0.74 -1.9
3,496,032 + IAI46_16685 0.74 +0.5
3,496,032 + IAI46_16685 0.74 +0.2
3,496,032 + IAI46_16685 0.74 -0.7
3,496,032 + IAI46_16685 0.74 -0.1
3,496,032 + IAI46_16685 0.74 +1.4
3,496,032 + IAI46_16685 0.74 +0.1
3,496,033 - IAI46_16685 0.74 -1.6
3,496,033 - IAI46_16685 0.74 -1.1
3,496,310 - +0.0
3,496,318 + -0.6
3,496,331 - -0.5
3,496,365 + -0.3
3,496,397 + -0.6
3,496,440 - -1.1
3,496,448 + -1.0
3,496,450 + +0.3
3,496,628 + +0.5
3,496,636 + +0.7
3,496,695 + IAI46_16690 0.11 +2.4
3,496,696 - IAI46_16690 0.11 -0.5
3,496,696 - IAI46_16690 0.11 +0.7
3,496,696 - IAI46_16690 0.11 +1.1
3,496,777 - IAI46_16690 0.23 -0.1
3,496,777 - IAI46_16690 0.23 -0.4
3,496,777 - IAI46_16690 0.23 +0.6
3,496,806 + IAI46_16690 0.27 +0.6
3,496,975 - IAI46_16690 0.52 -0.1
3,496,975 - IAI46_16690 0.52 -0.7
3,496,983 + IAI46_16690 0.53 -0.8
3,497,136 + IAI46_16690 0.75 -1.9
3,497,136 + IAI46_16690 0.75 -0.4
3,497,136 + IAI46_16690 0.75 -0.9
3,497,137 - IAI46_16690 0.75 +0.2
3,497,137 - IAI46_16690 0.75 -1.3
3,497,137 - IAI46_16690 0.75 -0.8
3,497,165 - IAI46_16690 0.80 +0.2
3,497,165 - IAI46_16690 0.80 -0.1
3,497,545 + IAI46_16695 0.32 +1.0
3,497,552 + IAI46_16695 0.33 -0.5
3,497,553 - IAI46_16695 0.33 +0.4
3,497,553 - IAI46_16695 0.33 -0.9
3,497,553 - IAI46_16695 0.33 +0.6
3,497,553 - IAI46_16695 0.33 +0.9
3,497,553 - IAI46_16695 0.33 -0.3
3,497,553 - IAI46_16695 0.33 +0.8
3,497,554 + IAI46_16695 0.34 +0.5
3,497,554 + IAI46_16695 0.34 +0.6
3,497,554 + IAI46_16695 0.34 +1.6
3,497,554 + IAI46_16695 0.34 +0.7
3,497,555 - IAI46_16695 0.34 +0.8
3,497,555 - IAI46_16695 0.34 +0.6
3,497,555 - IAI46_16695 0.34 +1.2
3,497,603 - IAI46_16695 0.40 +0.3
3,497,687 + IAI46_16695 0.51 -0.2
3,497,741 - IAI46_16695 0.58 +0.1
3,497,756 + IAI46_16695 0.60 -1.5
3,497,861 - IAI46_16695 0.74 +0.1
3,498,214 + IAI46_16700 0.21 -0.6
3,498,278 + IAI46_16700 0.29 -1.0

Or see this region's nucleotide sequence