Strain Fitness in Serratia liquefaciens MT49 around IAI46_15690

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15685 and IAI46_15690 are separated by 314 nucleotidesIAI46_15690 and IAI46_15695 are separated by 34 nucleotides IAI46_15685: IAI46_15685 - siderophore-interacting protein, at 3,289,775 to 3,290,593 _15685 IAI46_15690: IAI46_15690 - sodium-potassium/proton antiporter ChaA, at 3,290,908 to 3,292,008 _15690 IAI46_15695: IAI46_15695 - lipid A hydroxylase LpxO, at 3,292,043 to 3,292,945 _15695 Position (kb) 3290 3291 3292 3293Strain fitness (log2 ratio) -2 -1 0 1 2at 3290.164 kb on + strand, within IAI46_15685at 3290.170 kb on + strand, within IAI46_15685at 3290.171 kb on - strand, within IAI46_15685at 3290.261 kb on - strand, within IAI46_15685at 3290.508 kb on - strand, within IAI46_15685at 3290.558 kb on - strandat 3290.613 kb on + strandat 3290.729 kb on - strandat 3290.809 kb on - strandat 3290.809 kb on - strandat 3290.817 kb on + strandat 3290.844 kb on + strandat 3290.844 kb on + strandat 3290.956 kb on + strandat 3291.009 kb on + strandat 3291.040 kb on - strand, within IAI46_15690at 3291.127 kb on + strand, within IAI46_15690at 3291.228 kb on + strand, within IAI46_15690at 3291.236 kb on - strand, within IAI46_15690at 3291.236 kb on - strand, within IAI46_15690at 3291.246 kb on + strand, within IAI46_15690at 3291.281 kb on + strand, within IAI46_15690at 3291.341 kb on - strand, within IAI46_15690at 3291.987 kb on + strandat 3292.045 kb on - strandat 3292.094 kb on - strandat 3292.101 kb on + strandat 3292.101 kb on + strandat 3292.102 kb on - strandat 3292.105 kb on - strandat 3292.155 kb on + strand, within IAI46_15695at 3292.155 kb on + strand, within IAI46_15695at 3292.155 kb on + strand, within IAI46_15695at 3292.156 kb on - strand, within IAI46_15695at 3292.156 kb on - strand, within IAI46_15695at 3292.156 kb on - strand, within IAI46_15695at 3292.159 kb on + strand, within IAI46_15695at 3292.159 kb on + strand, within IAI46_15695at 3292.159 kb on + strand, within IAI46_15695at 3292.159 kb on + strand, within IAI46_15695at 3292.161 kb on + strand, within IAI46_15695at 3292.161 kb on + strand, within IAI46_15695at 3292.161 kb on + strand, within IAI46_15695at 3292.162 kb on - strand, within IAI46_15695at 3292.162 kb on - strand, within IAI46_15695at 3292.162 kb on - strand, within IAI46_15695at 3292.605 kb on + strand, within IAI46_15695at 3292.618 kb on - strand, within IAI46_15695at 3292.666 kb on + strand, within IAI46_15695at 3292.666 kb on + strand, within IAI46_15695at 3292.666 kb on + strand, within IAI46_15695at 3292.666 kb on + strand, within IAI46_15695at 3292.667 kb on - strand, within IAI46_15695at 3292.669 kb on - strand, within IAI46_15695at 3292.875 kb on + strandat 3292.928 kb on + strandat 3293.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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3,290,164 + IAI46_15685 0.47 +0.7
3,290,170 + IAI46_15685 0.48 +0.8
3,290,171 - IAI46_15685 0.48 -0.2
3,290,261 - IAI46_15685 0.59 +0.2
3,290,508 - IAI46_15685 0.89 +0.5
3,290,558 - -0.6
3,290,613 + +0.2
3,290,729 - -0.1
3,290,809 - +0.1
3,290,809 - +0.1
3,290,817 + -1.0
3,290,844 + -1.0
3,290,844 + +0.2
3,290,956 + +0.2
3,291,009 + +0.5
3,291,040 - IAI46_15690 0.12 +0.1
3,291,127 + IAI46_15690 0.20 -0.7
3,291,228 + IAI46_15690 0.29 +0.8
3,291,236 - IAI46_15690 0.30 -0.3
3,291,236 - IAI46_15690 0.30 +0.8
3,291,246 + IAI46_15690 0.31 +0.4
3,291,281 + IAI46_15690 0.34 -0.8
3,291,341 - IAI46_15690 0.39 +1.1
3,291,987 + +0.2
3,292,045 - +0.3
3,292,094 - +0.4
3,292,101 + +0.4
3,292,101 + -0.9
3,292,102 - +1.1
3,292,105 - -0.4
3,292,155 + IAI46_15695 0.12 -0.2
3,292,155 + IAI46_15695 0.12 +0.1
3,292,155 + IAI46_15695 0.12 +0.2
3,292,156 - IAI46_15695 0.13 +0.2
3,292,156 - IAI46_15695 0.13 -0.6
3,292,156 - IAI46_15695 0.13 +0.6
3,292,159 + IAI46_15695 0.13 -0.3
3,292,159 + IAI46_15695 0.13 +0.0
3,292,159 + IAI46_15695 0.13 -0.2
3,292,159 + IAI46_15695 0.13 +0.3
3,292,161 + IAI46_15695 0.13 -0.8
3,292,161 + IAI46_15695 0.13 +0.1
3,292,161 + IAI46_15695 0.13 +1.0
3,292,162 - IAI46_15695 0.13 -0.2
3,292,162 - IAI46_15695 0.13 +0.1
3,292,162 - IAI46_15695 0.13 +1.9
3,292,605 + IAI46_15695 0.62 +0.4
3,292,618 - IAI46_15695 0.64 -0.1
3,292,666 + IAI46_15695 0.69 +0.9
3,292,666 + IAI46_15695 0.69 -0.1
3,292,666 + IAI46_15695 0.69 +0.2
3,292,666 + IAI46_15695 0.69 -2.4
3,292,667 - IAI46_15695 0.69 -0.4
3,292,669 - IAI46_15695 0.69 +0.7
3,292,875 + -0.8
3,292,928 + -2.2
3,293,004 + +0.7

Or see this region's nucleotide sequence