Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15630 and IAI46_15635 are separated by 134 nucleotides IAI46_15635 and IAI46_15640 overlap by 4 nucleotides IAI46_15640 and IAI46_15645 overlap by 11 nucleotides
IAI46_15630: IAI46_15630 - ABC transporter substrate-binding protein, at 3,278,862 to 3,280,436
_15630
IAI46_15635: IAI46_15635 - ABC transporter ATP-binding protein, at 3,280,571 to 3,281,242
_15635
IAI46_15640: IAI46_15640 - ABC transporter ATP-binding protein, at 3,281,239 to 3,282,075
_15640
IAI46_15645: IAI46_15645 - ABC transporter permease, at 3,282,065 to 3,282,934
_15645
Position (kb)
3280
3281
3282 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3279.586 kb on + strand, within IAI46_15630 at 3279.590 kb on - strand, within IAI46_15630 at 3279.670 kb on + strand, within IAI46_15630 at 3279.702 kb on + strand, within IAI46_15630 at 3279.807 kb on + strand, within IAI46_15630 at 3279.807 kb on + strand, within IAI46_15630 at 3279.811 kb on + strand, within IAI46_15630 at 3279.812 kb on - strand, within IAI46_15630 at 3279.812 kb on - strand, within IAI46_15630 at 3279.812 kb on - strand, within IAI46_15630 at 3279.981 kb on + strand, within IAI46_15630 at 3279.982 kb on - strand, within IAI46_15630 at 3279.982 kb on - strand, within IAI46_15630 at 3279.982 kb on - strand, within IAI46_15630 at 3280.163 kb on + strand, within IAI46_15630 at 3280.164 kb on - strand, within IAI46_15630 at 3280.264 kb on + strand, within IAI46_15630 at 3280.264 kb on + strand, within IAI46_15630 at 3280.265 kb on - strand, within IAI46_15630 at 3280.265 kb on - strand, within IAI46_15630 at 3280.413 kb on + strand at 3280.414 kb on - strand at 3280.468 kb on + strand at 3280.481 kb on + strand at 3280.482 kb on - strand at 3280.482 kb on - strand at 3280.482 kb on - strand at 3280.482 kb on - strand at 3280.914 kb on - strand, within IAI46_15635 at 3280.955 kb on + strand, within IAI46_15635 at 3281.011 kb on + strand, within IAI46_15635 at 3281.011 kb on + strand, within IAI46_15635 at 3281.394 kb on - strand, within IAI46_15640 at 3281.394 kb on - strand, within IAI46_15640 at 3281.417 kb on + strand, within IAI46_15640 at 3281.463 kb on + strand, within IAI46_15640 at 3281.463 kb on + strand, within IAI46_15640 at 3281.463 kb on + strand, within IAI46_15640 at 3281.463 kb on + strand, within IAI46_15640 at 3281.463 kb on + strand, within IAI46_15640 at 3281.464 kb on - strand, within IAI46_15640 at 3281.464 kb on - strand, within IAI46_15640 at 3281.466 kb on + strand, within IAI46_15640 at 3281.466 kb on + strand, within IAI46_15640 at 3281.466 kb on + strand, within IAI46_15640 at 3281.466 kb on + strand, within IAI46_15640 at 3281.467 kb on - strand, within IAI46_15640 at 3281.467 kb on - strand, within IAI46_15640 at 3281.467 kb on - strand, within IAI46_15640 at 3281.467 kb on - strand, within IAI46_15640 at 3281.718 kb on + strand, within IAI46_15640 at 3281.893 kb on + strand, within IAI46_15640 at 3282.063 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 3,279,586 + IAI46_15630 0.46 -0.3 3,279,590 - IAI46_15630 0.46 +0.5 3,279,670 + IAI46_15630 0.51 +1.9 3,279,702 + IAI46_15630 0.53 +0.1 3,279,807 + IAI46_15630 0.60 -0.8 3,279,807 + IAI46_15630 0.60 -0.1 3,279,811 + IAI46_15630 0.60 +0.5 3,279,812 - IAI46_15630 0.60 -0.2 3,279,812 - IAI46_15630 0.60 -0.7 3,279,812 - IAI46_15630 0.60 -0.5 3,279,981 + IAI46_15630 0.71 +0.3 3,279,982 - IAI46_15630 0.71 -0.9 3,279,982 - IAI46_15630 0.71 +0.8 3,279,982 - IAI46_15630 0.71 -1.5 3,280,163 + IAI46_15630 0.83 +0.8 3,280,164 - IAI46_15630 0.83 +1.2 3,280,264 + IAI46_15630 0.89 -0.1 3,280,264 + IAI46_15630 0.89 -3.1 3,280,265 - IAI46_15630 0.89 -0.5 3,280,265 - IAI46_15630 0.89 -0.6 3,280,413 + +0.3 3,280,414 - +0.5 3,280,468 + -1.0 3,280,481 + +0.3 3,280,482 - -0.7 3,280,482 - +0.2 3,280,482 - -2.2 3,280,482 - +0.1 3,280,914 - IAI46_15635 0.51 -2.2 3,280,955 + IAI46_15635 0.57 +0.3 3,281,011 + IAI46_15635 0.65 -0.4 3,281,011 + IAI46_15635 0.65 -0.2 3,281,394 - IAI46_15640 0.19 -0.1 3,281,394 - IAI46_15640 0.19 -0.4 3,281,417 + IAI46_15640 0.21 +1.6 3,281,463 + IAI46_15640 0.27 +1.1 3,281,463 + IAI46_15640 0.27 -0.7 3,281,463 + IAI46_15640 0.27 +0.0 3,281,463 + IAI46_15640 0.27 +0.7 3,281,463 + IAI46_15640 0.27 +0.4 3,281,464 - IAI46_15640 0.27 +0.2 3,281,464 - IAI46_15640 0.27 -1.4 3,281,466 + IAI46_15640 0.27 +0.3 3,281,466 + IAI46_15640 0.27 +1.0 3,281,466 + IAI46_15640 0.27 +2.1 3,281,466 + IAI46_15640 0.27 +0.5 3,281,467 - IAI46_15640 0.27 +0.1 3,281,467 - IAI46_15640 0.27 +0.9 3,281,467 - IAI46_15640 0.27 -0.1 3,281,467 - IAI46_15640 0.27 +0.2 3,281,718 + IAI46_15640 0.57 -0.4 3,281,893 + IAI46_15640 0.78 +0.9 3,282,063 + +1.2
Or see this region's nucleotide sequence