Strain Fitness in Serratia liquefaciens MT49 around IAI46_15515

Experiment: Nickel (II) chloride 80 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_15505 and IAI46_15510 are separated by 74 nucleotidesIAI46_15510 and IAI46_15515 are separated by 2 nucleotidesIAI46_15515 and IAI46_15520 overlap by 4 nucleotides IAI46_15505: IAI46_15505 - type 1 fimbrial protein, at 3,245,732 to 3,246,232 _15505 IAI46_15510: IAI46_15510 - respiratory nitrate reductase subunit gamma, at 3,246,307 to 3,246,984 _15510 IAI46_15515: IAI46_15515 - nitrate reductase molybdenum cofactor assembly chaperone, at 3,246,987 to 3,247,724 _15515 IAI46_15520: IAI46_15520 - nitrate reductase subunit beta, at 3,247,721 to 3,249,265 _15520 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -2 -1 0 1at 3246.022 kb on + strand, within IAI46_15505at 3246.225 kb on - strandat 3246.230 kb on + strandat 3246.245 kb on + strandat 3246.370 kb on - strandat 3246.370 kb on - strandat 3246.424 kb on - strand, within IAI46_15510at 3246.534 kb on + strand, within IAI46_15510at 3246.535 kb on - strand, within IAI46_15510at 3246.755 kb on + strand, within IAI46_15510at 3246.755 kb on + strand, within IAI46_15510at 3246.756 kb on - strand, within IAI46_15510at 3246.919 kb on + strandat 3246.951 kb on - strandat 3247.030 kb on + strandat 3247.367 kb on - strand, within IAI46_15515at 3247.367 kb on - strand, within IAI46_15515at 3247.376 kb on - strand, within IAI46_15515at 3247.376 kb on - strand, within IAI46_15515at 3247.485 kb on + strand, within IAI46_15515at 3247.486 kb on - strand, within IAI46_15515at 3247.486 kb on - strand, within IAI46_15515at 3247.486 kb on - strand, within IAI46_15515at 3247.486 kb on - strand, within IAI46_15515at 3247.587 kb on - strand, within IAI46_15515at 3247.647 kb on + strand, within IAI46_15515at 3247.671 kb on + strandat 3247.672 kb on - strandat 3247.938 kb on + strand, within IAI46_15520at 3247.939 kb on - strand, within IAI46_15520at 3247.939 kb on - strand, within IAI46_15520at 3247.939 kb on - strand, within IAI46_15520at 3248.026 kb on - strand, within IAI46_15520at 3248.103 kb on + strand, within IAI46_15520at 3248.103 kb on + strand, within IAI46_15520at 3248.104 kb on - strand, within IAI46_15520at 3248.116 kb on + strand, within IAI46_15520at 3248.141 kb on + strand, within IAI46_15520at 3248.205 kb on + strand, within IAI46_15520at 3248.374 kb on + strand, within IAI46_15520at 3248.375 kb on - strand, within IAI46_15520at 3248.391 kb on + strand, within IAI46_15520at 3248.391 kb on + strand, within IAI46_15520at 3248.470 kb on + strand, within IAI46_15520at 3248.537 kb on - strand, within IAI46_15520at 3248.584 kb on - strand, within IAI46_15520at 3248.623 kb on + strand, within IAI46_15520at 3248.664 kb on + strand, within IAI46_15520at 3248.664 kb on + strand, within IAI46_15520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
remove
3,246,022 + IAI46_15505 0.58 +0.4
3,246,225 - +0.6
3,246,230 + +0.7
3,246,245 + -0.7
3,246,370 - +0.4
3,246,370 - -0.4
3,246,424 - IAI46_15510 0.17 -0.6
3,246,534 + IAI46_15510 0.33 -0.4
3,246,535 - IAI46_15510 0.34 +0.0
3,246,755 + IAI46_15510 0.66 -1.4
3,246,755 + IAI46_15510 0.66 -0.3
3,246,756 - IAI46_15510 0.66 -1.4
3,246,919 + -1.7
3,246,951 - -0.7
3,247,030 + -0.3
3,247,367 - IAI46_15515 0.51 -0.9
3,247,367 - IAI46_15515 0.51 -0.2
3,247,376 - IAI46_15515 0.53 -1.4
3,247,376 - IAI46_15515 0.53 -1.4
3,247,485 + IAI46_15515 0.67 +0.6
3,247,486 - IAI46_15515 0.68 -1.0
3,247,486 - IAI46_15515 0.68 -0.1
3,247,486 - IAI46_15515 0.68 -0.1
3,247,486 - IAI46_15515 0.68 -0.4
3,247,587 - IAI46_15515 0.81 -1.8
3,247,647 + IAI46_15515 0.89 +0.6
3,247,671 + +0.0
3,247,672 - -0.3
3,247,938 + IAI46_15520 0.14 -0.1
3,247,939 - IAI46_15520 0.14 -2.1
3,247,939 - IAI46_15520 0.14 -0.4
3,247,939 - IAI46_15520 0.14 +0.6
3,248,026 - IAI46_15520 0.20 -0.2
3,248,103 + IAI46_15520 0.25 -1.9
3,248,103 + IAI46_15520 0.25 +0.3
3,248,104 - IAI46_15520 0.25 -0.7
3,248,116 + IAI46_15520 0.26 +0.0
3,248,141 + IAI46_15520 0.27 -0.1
3,248,205 + IAI46_15520 0.31 -0.6
3,248,374 + IAI46_15520 0.42 -2.1
3,248,375 - IAI46_15520 0.42 -0.7
3,248,391 + IAI46_15520 0.43 -0.4
3,248,391 + IAI46_15520 0.43 -1.7
3,248,470 + IAI46_15520 0.48 +0.0
3,248,537 - IAI46_15520 0.53 -0.7
3,248,584 - IAI46_15520 0.56 +0.5
3,248,623 + IAI46_15520 0.58 -0.4
3,248,664 + IAI46_15520 0.61 -1.6
3,248,664 + IAI46_15520 0.61 +0.6

Or see this region's nucleotide sequence