Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15500 and IAI46_15505 are separated by 23 nucleotides IAI46_15505 and IAI46_15510 are separated by 74 nucleotides IAI46_15510 and IAI46_15515 are separated by 2 nucleotides IAI46_15515 and IAI46_15520 overlap by 4 nucleotides
IAI46_15500: IAI46_15500 - type 1 fimbrial protein, at 3,245,193 to 3,245,708
_15500
IAI46_15505: IAI46_15505 - type 1 fimbrial protein, at 3,245,732 to 3,246,232
_15505
IAI46_15510: IAI46_15510 - respiratory nitrate reductase subunit gamma, at 3,246,307 to 3,246,984
_15510
IAI46_15515: IAI46_15515 - nitrate reductase molybdenum cofactor assembly chaperone, at 3,246,987 to 3,247,724
_15515
IAI46_15520: IAI46_15520 - nitrate reductase subunit beta, at 3,247,721 to 3,249,265
_15520
Position (kb) 3246
3247 Strain fitness (log2 ratio) -2
-1
0
1 at 3245.369 kb on + strand, within IAI46_15500 at 3245.370 kb on - strand, within IAI46_15500 at 3245.546 kb on + strand, within IAI46_15500 at 3245.546 kb on + strand, within IAI46_15500 at 3245.547 kb on - strand, within IAI46_15500 at 3245.574 kb on - strand, within IAI46_15500 at 3245.574 kb on - strand, within IAI46_15500 at 3245.640 kb on + strand, within IAI46_15500 at 3245.641 kb on - strand, within IAI46_15500 at 3245.641 kb on - strand, within IAI46_15500 at 3245.701 kb on - strand at 3245.706 kb on + strand at 3245.707 kb on - strand at 3245.707 kb on - strand at 3245.725 kb on + strand at 3245.726 kb on - strand at 3246.022 kb on + strand, within IAI46_15505 at 3246.225 kb on - strand at 3246.230 kb on + strand at 3246.245 kb on + strand at 3246.370 kb on - strand at 3246.370 kb on - strand at 3246.424 kb on - strand, within IAI46_15510 at 3246.534 kb on + strand, within IAI46_15510 at 3246.535 kb on - strand, within IAI46_15510 at 3246.755 kb on + strand, within IAI46_15510 at 3246.755 kb on + strand, within IAI46_15510 at 3246.756 kb on - strand, within IAI46_15510 at 3246.919 kb on + strand at 3246.951 kb on - strand at 3247.030 kb on + strand at 3247.367 kb on - strand, within IAI46_15515 at 3247.367 kb on - strand, within IAI46_15515 at 3247.376 kb on - strand, within IAI46_15515 at 3247.376 kb on - strand, within IAI46_15515 at 3247.485 kb on + strand, within IAI46_15515 at 3247.486 kb on - strand, within IAI46_15515 at 3247.486 kb on - strand, within IAI46_15515 at 3247.486 kb on - strand, within IAI46_15515 at 3247.486 kb on - strand, within IAI46_15515 at 3247.587 kb on - strand, within IAI46_15515 at 3247.647 kb on + strand, within IAI46_15515 at 3247.671 kb on + strand at 3247.672 kb on - strand at 3247.938 kb on + strand, within IAI46_15520 at 3247.939 kb on - strand, within IAI46_15520 at 3247.939 kb on - strand, within IAI46_15520 at 3247.939 kb on - strand, within IAI46_15520
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 3,245,369 + IAI46_15500 0.34 +0.6 3,245,370 - IAI46_15500 0.34 +0.6 3,245,546 + IAI46_15500 0.68 -0.3 3,245,546 + IAI46_15500 0.68 -0.5 3,245,547 - IAI46_15500 0.69 -1.7 3,245,574 - IAI46_15500 0.74 -0.6 3,245,574 - IAI46_15500 0.74 +0.3 3,245,640 + IAI46_15500 0.87 +0.2 3,245,641 - IAI46_15500 0.87 +0.3 3,245,641 - IAI46_15500 0.87 +1.6 3,245,701 - -0.8 3,245,706 + -1.7 3,245,707 - -0.1 3,245,707 - -0.0 3,245,725 + +0.3 3,245,726 - -0.2 3,246,022 + IAI46_15505 0.58 +0.4 3,246,225 - +0.6 3,246,230 + +0.7 3,246,245 + -0.7 3,246,370 - +0.4 3,246,370 - -0.4 3,246,424 - IAI46_15510 0.17 -0.6 3,246,534 + IAI46_15510 0.33 -0.4 3,246,535 - IAI46_15510 0.34 +0.0 3,246,755 + IAI46_15510 0.66 -1.4 3,246,755 + IAI46_15510 0.66 -0.3 3,246,756 - IAI46_15510 0.66 -1.4 3,246,919 + -1.7 3,246,951 - -0.7 3,247,030 + -0.3 3,247,367 - IAI46_15515 0.51 -0.9 3,247,367 - IAI46_15515 0.51 -0.2 3,247,376 - IAI46_15515 0.53 -1.4 3,247,376 - IAI46_15515 0.53 -1.4 3,247,485 + IAI46_15515 0.67 +0.6 3,247,486 - IAI46_15515 0.68 -1.0 3,247,486 - IAI46_15515 0.68 -0.1 3,247,486 - IAI46_15515 0.68 -0.1 3,247,486 - IAI46_15515 0.68 -0.4 3,247,587 - IAI46_15515 0.81 -1.8 3,247,647 + IAI46_15515 0.89 +0.6 3,247,671 + +0.0 3,247,672 - -0.3 3,247,938 + IAI46_15520 0.14 -0.1 3,247,939 - IAI46_15520 0.14 -2.1 3,247,939 - IAI46_15520 0.14 -0.4 3,247,939 - IAI46_15520 0.14 +0.6
Or see this region's nucleotide sequence