Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14865 and IAI46_14870 are separated by 176 nucleotides IAI46_14870 and IAI46_14875 are separated by 67 nucleotides IAI46_14875 and IAI46_14880 are separated by 169 nucleotides
IAI46_14865: IAI46_14865 - amino acid permease, at 3,146,950 to 3,148,317
_14865
IAI46_14870: IAI46_14870 - DUF4060 family protein, at 3,148,494 to 3,148,730
_14870
IAI46_14875: IAI46_14875 - DUF2591 family protein, at 3,148,798 to 3,149,112
_14875
IAI46_14880: IAI46_14880 - fosfomycin resistance glutathione transferase, at 3,149,282 to 3,149,689
_14880
Position (kb)
3148
3149 Strain fitness (log2 ratio)
-2
-1
0
1 at 3147.593 kb on + strand, within IAI46_14865 at 3147.736 kb on - strand, within IAI46_14865 at 3147.907 kb on - strand, within IAI46_14865 at 3147.971 kb on + strand, within IAI46_14865 at 3147.972 kb on - strand, within IAI46_14865 at 3147.972 kb on - strand, within IAI46_14865 at 3148.065 kb on - strand, within IAI46_14865 at 3148.167 kb on - strand, within IAI46_14865 at 3148.177 kb on + strand, within IAI46_14865 at 3148.197 kb on + strand at 3148.198 kb on - strand at 3148.198 kb on - strand at 3148.237 kb on - strand at 3148.263 kb on + strand at 3148.263 kb on + strand at 3148.264 kb on - strand at 3148.288 kb on + strand at 3148.375 kb on - strand at 3148.405 kb on + strand at 3148.405 kb on + strand at 3148.406 kb on - strand at 3148.427 kb on + strand at 3148.428 kb on - strand at 3148.428 kb on - strand at 3148.428 kb on - strand at 3148.495 kb on + strand at 3148.556 kb on - strand, within IAI46_14870 at 3148.556 kb on - strand, within IAI46_14870 at 3148.573 kb on - strand, within IAI46_14870 at 3148.573 kb on - strand, within IAI46_14870 at 3148.715 kb on + strand at 3148.785 kb on + strand at 3148.786 kb on - strand at 3149.000 kb on + strand, within IAI46_14875 at 3149.100 kb on - strand at 3149.144 kb on + strand at 3149.149 kb on + strand at 3149.149 kb on + strand at 3149.149 kb on + strand at 3149.160 kb on + strand at 3149.197 kb on + strand at 3149.245 kb on - strand at 3149.348 kb on - strand, within IAI46_14880 at 3149.477 kb on + strand, within IAI46_14880 at 3149.667 kb on - strand at 3149.706 kb on - strand at 3149.706 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 3,147,593 + IAI46_14865 0.47 +0.8 3,147,736 - IAI46_14865 0.57 -1.6 3,147,907 - IAI46_14865 0.70 -0.4 3,147,971 + IAI46_14865 0.75 +0.7 3,147,972 - IAI46_14865 0.75 +0.2 3,147,972 - IAI46_14865 0.75 -0.4 3,148,065 - IAI46_14865 0.82 -1.4 3,148,167 - IAI46_14865 0.89 -0.9 3,148,177 + IAI46_14865 0.90 +0.1 3,148,197 + -0.4 3,148,198 - +0.6 3,148,198 - +1.7 3,148,237 - -1.1 3,148,263 + +0.3 3,148,263 + +1.1 3,148,264 - -0.0 3,148,288 + -0.5 3,148,375 - -1.3 3,148,405 + -0.1 3,148,405 + +0.0 3,148,406 - +0.3 3,148,427 + -0.3 3,148,428 - +0.7 3,148,428 - -0.2 3,148,428 - -0.0 3,148,495 + -0.8 3,148,556 - IAI46_14870 0.26 -0.3 3,148,556 - IAI46_14870 0.26 -1.2 3,148,573 - IAI46_14870 0.33 +0.3 3,148,573 - IAI46_14870 0.33 -1.2 3,148,715 + +0.1 3,148,785 + +1.2 3,148,786 - -0.0 3,149,000 + IAI46_14875 0.64 +0.6 3,149,100 - +0.6 3,149,144 + -1.4 3,149,149 + -0.1 3,149,149 + +0.1 3,149,149 + +0.1 3,149,160 + -0.2 3,149,197 + -0.2 3,149,245 - -2.0 3,149,348 - IAI46_14880 0.16 -0.5 3,149,477 + IAI46_14880 0.48 -0.7 3,149,667 - +0.4 3,149,706 - +0.8 3,149,706 - -0.5
Or see this region's nucleotide sequence