Strain Fitness in Serratia liquefaciens MT49 around IAI46_14870

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14865 and IAI46_14870 are separated by 176 nucleotidesIAI46_14870 and IAI46_14875 are separated by 67 nucleotidesIAI46_14875 and IAI46_14880 are separated by 169 nucleotides IAI46_14865: IAI46_14865 - amino acid permease, at 3,146,950 to 3,148,317 _14865 IAI46_14870: IAI46_14870 - DUF4060 family protein, at 3,148,494 to 3,148,730 _14870 IAI46_14875: IAI46_14875 - DUF2591 family protein, at 3,148,798 to 3,149,112 _14875 IAI46_14880: IAI46_14880 - fosfomycin resistance glutathione transferase, at 3,149,282 to 3,149,689 _14880 Position (kb) 3148 3149Strain fitness (log2 ratio) -2 -1 0 1at 3147.593 kb on + strand, within IAI46_14865at 3147.736 kb on - strand, within IAI46_14865at 3147.907 kb on - strand, within IAI46_14865at 3147.971 kb on + strand, within IAI46_14865at 3147.972 kb on - strand, within IAI46_14865at 3147.972 kb on - strand, within IAI46_14865at 3148.065 kb on - strand, within IAI46_14865at 3148.167 kb on - strand, within IAI46_14865at 3148.177 kb on + strand, within IAI46_14865at 3148.197 kb on + strandat 3148.198 kb on - strandat 3148.198 kb on - strandat 3148.237 kb on - strandat 3148.263 kb on + strandat 3148.263 kb on + strandat 3148.264 kb on - strandat 3148.288 kb on + strandat 3148.375 kb on - strandat 3148.405 kb on + strandat 3148.405 kb on + strandat 3148.406 kb on - strandat 3148.427 kb on + strandat 3148.428 kb on - strandat 3148.428 kb on - strandat 3148.428 kb on - strandat 3148.495 kb on + strandat 3148.556 kb on - strand, within IAI46_14870at 3148.556 kb on - strand, within IAI46_14870at 3148.573 kb on - strand, within IAI46_14870at 3148.573 kb on - strand, within IAI46_14870at 3148.715 kb on + strandat 3148.785 kb on + strandat 3148.786 kb on - strandat 3149.000 kb on + strand, within IAI46_14875at 3149.100 kb on - strandat 3149.144 kb on + strandat 3149.149 kb on + strandat 3149.149 kb on + strandat 3149.149 kb on + strandat 3149.160 kb on + strandat 3149.197 kb on + strandat 3149.245 kb on - strandat 3149.348 kb on - strand, within IAI46_14880at 3149.477 kb on + strand, within IAI46_14880at 3149.667 kb on - strandat 3149.706 kb on - strandat 3149.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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3,147,593 + IAI46_14865 0.47 +0.8
3,147,736 - IAI46_14865 0.57 -1.6
3,147,907 - IAI46_14865 0.70 -0.4
3,147,971 + IAI46_14865 0.75 +0.7
3,147,972 - IAI46_14865 0.75 +0.2
3,147,972 - IAI46_14865 0.75 -0.4
3,148,065 - IAI46_14865 0.82 -1.4
3,148,167 - IAI46_14865 0.89 -0.9
3,148,177 + IAI46_14865 0.90 +0.1
3,148,197 + -0.4
3,148,198 - +0.6
3,148,198 - +1.7
3,148,237 - -1.1
3,148,263 + +0.3
3,148,263 + +1.1
3,148,264 - -0.0
3,148,288 + -0.5
3,148,375 - -1.3
3,148,405 + -0.1
3,148,405 + +0.0
3,148,406 - +0.3
3,148,427 + -0.3
3,148,428 - +0.7
3,148,428 - -0.2
3,148,428 - -0.0
3,148,495 + -0.8
3,148,556 - IAI46_14870 0.26 -0.3
3,148,556 - IAI46_14870 0.26 -1.2
3,148,573 - IAI46_14870 0.33 +0.3
3,148,573 - IAI46_14870 0.33 -1.2
3,148,715 + +0.1
3,148,785 + +1.2
3,148,786 - -0.0
3,149,000 + IAI46_14875 0.64 +0.6
3,149,100 - +0.6
3,149,144 + -1.4
3,149,149 + -0.1
3,149,149 + +0.1
3,149,149 + +0.1
3,149,160 + -0.2
3,149,197 + -0.2
3,149,245 - -2.0
3,149,348 - IAI46_14880 0.16 -0.5
3,149,477 + IAI46_14880 0.48 -0.7
3,149,667 - +0.4
3,149,706 - +0.8
3,149,706 - -0.5

Or see this region's nucleotide sequence