Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14675 and IAI46_14680 are separated by 51 nucleotides IAI46_14680 and IAI46_14685 are separated by 350 nucleotides
IAI46_14675: IAI46_14675 - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 3,108,389 to 3,109,360
_14675
IAI46_14680: IAI46_14680 - hypothetical protein, at 3,109,412 to 3,109,915
_14680
IAI46_14685: IAI46_14685 - copper homeostasis protein CutC, at 3,110,266 to 3,111,024
_14685
Position (kb)
3109
3110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3108.493 kb on - strand, within IAI46_14675 at 3108.500 kb on - strand, within IAI46_14675 at 3108.534 kb on + strand, within IAI46_14675 at 3108.677 kb on + strand, within IAI46_14675 at 3108.678 kb on - strand, within IAI46_14675 at 3108.729 kb on + strand, within IAI46_14675 at 3108.732 kb on + strand, within IAI46_14675 at 3108.840 kb on + strand, within IAI46_14675 at 3108.841 kb on - strand, within IAI46_14675 at 3109.338 kb on + strand at 3109.384 kb on - strand at 3109.854 kb on + strand, within IAI46_14680 at 3109.855 kb on - strand, within IAI46_14680 at 3109.924 kb on - strand at 3109.964 kb on + strand at 3109.964 kb on + strand at 3110.006 kb on - strand at 3110.060 kb on - strand at 3110.086 kb on + strand at 3110.087 kb on - strand at 3110.149 kb on + strand at 3110.149 kb on + strand at 3110.380 kb on - strand, within IAI46_14685 at 3110.380 kb on - strand, within IAI46_14685 at 3110.679 kb on + strand, within IAI46_14685 at 3110.680 kb on - strand, within IAI46_14685 at 3110.790 kb on + strand, within IAI46_14685 at 3110.790 kb on + strand, within IAI46_14685 at 3110.856 kb on + strand, within IAI46_14685 at 3110.907 kb on - strand, within IAI46_14685
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 3,108,493 - IAI46_14675 0.11 -0.7 3,108,500 - IAI46_14675 0.11 -0.5 3,108,534 + IAI46_14675 0.15 -2.0 3,108,677 + IAI46_14675 0.30 -0.5 3,108,678 - IAI46_14675 0.30 +0.5 3,108,729 + IAI46_14675 0.35 -1.3 3,108,732 + IAI46_14675 0.35 +0.7 3,108,840 + IAI46_14675 0.46 -0.6 3,108,841 - IAI46_14675 0.47 +1.0 3,109,338 + +1.3 3,109,384 - +0.7 3,109,854 + IAI46_14680 0.88 -0.8 3,109,855 - IAI46_14680 0.88 -0.5 3,109,924 - +1.3 3,109,964 + +0.6 3,109,964 + +0.1 3,110,006 - +0.8 3,110,060 - -0.2 3,110,086 + +2.2 3,110,087 - +0.8 3,110,149 + -0.3 3,110,149 + -0.1 3,110,380 - IAI46_14685 0.15 -0.6 3,110,380 - IAI46_14685 0.15 -0.5 3,110,679 + IAI46_14685 0.54 -0.1 3,110,680 - IAI46_14685 0.55 +1.0 3,110,790 + IAI46_14685 0.69 -0.8 3,110,790 + IAI46_14685 0.69 +0.4 3,110,856 + IAI46_14685 0.78 +2.1 3,110,907 - IAI46_14685 0.84 +1.3
Or see this region's nucleotide sequence