Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13095 and IAI46_13100 overlap by 8 nucleotides IAI46_13100 and IAI46_13105 are separated by 34 nucleotides IAI46_13105 and IAI46_13110 are separated by 28 nucleotides IAI46_13110 and IAI46_13115 overlap by 4 nucleotides
IAI46_13095: IAI46_13095 - ABC transporter ATP-binding protein, at 2,795,000 to 2,795,770
_13095
IAI46_13100: IAI46_13100 - ABC transporter ATP-binding protein, at 2,795,763 to 2,796,476
_13100
IAI46_13105: IAI46_13105 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,796,511 to 2,797,671
_13105
IAI46_13110: IAI46_13110 - L-2-amino-thiazoline-4-carboxylic acid hydrolase, at 2,797,700 to 2,798,191
_13110
IAI46_13115: IAI46_13115 - Zn-dependent hydrolase, at 2,798,188 to 2,799,414
_13115
Position (kb)
2796
2797
2798 Strain fitness (log2 ratio)
-2
-1
0
1 at 2795.715 kb on + strand at 2796.258 kb on - strand, within IAI46_13100 at 2796.385 kb on - strand, within IAI46_13100 at 2796.385 kb on - strand, within IAI46_13100 at 2796.521 kb on + strand at 2796.521 kb on + strand at 2796.522 kb on - strand at 2796.522 kb on - strand at 2796.871 kb on + strand, within IAI46_13105 at 2796.872 kb on - strand, within IAI46_13105 at 2796.923 kb on - strand, within IAI46_13105 at 2796.923 kb on - strand, within IAI46_13105 at 2796.923 kb on - strand, within IAI46_13105 at 2796.924 kb on + strand, within IAI46_13105 at 2796.925 kb on - strand, within IAI46_13105 at 2796.942 kb on + strand, within IAI46_13105 at 2796.981 kb on + strand, within IAI46_13105 at 2796.985 kb on + strand, within IAI46_13105 at 2796.997 kb on + strand, within IAI46_13105 at 2796.997 kb on + strand, within IAI46_13105 at 2797.013 kb on + strand, within IAI46_13105 at 2797.126 kb on + strand, within IAI46_13105 at 2797.127 kb on - strand, within IAI46_13105 at 2797.340 kb on + strand, within IAI46_13105 at 2797.450 kb on + strand, within IAI46_13105 at 2797.514 kb on - strand, within IAI46_13105 at 2797.563 kb on + strand at 2797.746 kb on + strand at 2797.747 kb on - strand at 2797.919 kb on + strand, within IAI46_13110 at 2797.919 kb on + strand, within IAI46_13110 at 2797.919 kb on + strand, within IAI46_13110 at 2797.961 kb on + strand, within IAI46_13110 at 2798.018 kb on + strand, within IAI46_13110 at 2798.018 kb on + strand, within IAI46_13110 at 2798.374 kb on - strand, within IAI46_13115 at 2798.609 kb on + strand, within IAI46_13115
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 2,795,715 + +1.1 2,796,258 - IAI46_13100 0.69 +1.5 2,796,385 - IAI46_13100 0.87 +0.1 2,796,385 - IAI46_13100 0.87 -0.7 2,796,521 + +0.0 2,796,521 + -1.2 2,796,522 - +0.7 2,796,522 - -0.4 2,796,871 + IAI46_13105 0.31 +0.2 2,796,872 - IAI46_13105 0.31 -0.5 2,796,923 - IAI46_13105 0.35 +0.8 2,796,923 - IAI46_13105 0.35 +0.2 2,796,923 - IAI46_13105 0.35 +1.1 2,796,924 + IAI46_13105 0.36 +0.5 2,796,925 - IAI46_13105 0.36 +0.5 2,796,942 + IAI46_13105 0.37 -1.2 2,796,981 + IAI46_13105 0.40 +0.6 2,796,985 + IAI46_13105 0.41 +0.8 2,796,997 + IAI46_13105 0.42 +1.0 2,796,997 + IAI46_13105 0.42 -1.2 2,797,013 + IAI46_13105 0.43 +0.4 2,797,126 + IAI46_13105 0.53 +0.1 2,797,127 - IAI46_13105 0.53 +0.1 2,797,340 + IAI46_13105 0.71 +1.1 2,797,450 + IAI46_13105 0.81 -0.6 2,797,514 - IAI46_13105 0.86 -1.8 2,797,563 + +0.3 2,797,746 + +0.3 2,797,747 - -1.2 2,797,919 + IAI46_13110 0.45 +0.0 2,797,919 + IAI46_13110 0.45 -0.6 2,797,919 + IAI46_13110 0.45 -1.4 2,797,961 + IAI46_13110 0.53 -0.4 2,798,018 + IAI46_13110 0.65 -1.0 2,798,018 + IAI46_13110 0.65 -1.5 2,798,374 - IAI46_13115 0.15 +1.2 2,798,609 + IAI46_13115 0.34 -1.1
Or see this region's nucleotide sequence