Strain Fitness in Serratia liquefaciens MT49 around IAI46_10275

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10270 and IAI46_10275 are separated by 715 nucleotidesIAI46_10275 and IAI46_10280 are separated by 31 nucleotides IAI46_10270: IAI46_10270 - lipoprotein localization protein LolB, at 2,167,188 to 2,167,811 _10270 IAI46_10275: IAI46_10275 - glutamyl-tRNA reductase, at 2,168,527 to 2,169,789 _10275 IAI46_10280: IAI46_10280 - peptide chain release factor 1, at 2,169,821 to 2,170,906 _10280 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -2 -1 0 1 2at 2167.862 kb on + strandat 2167.979 kb on + strandat 2167.980 kb on - strandat 2167.985 kb on + strandat 2168.024 kb on + strandat 2168.025 kb on - strandat 2168.025 kb on - strandat 2168.057 kb on + strandat 2168.058 kb on - strandat 2168.076 kb on + strandat 2168.077 kb on - strandat 2168.086 kb on + strandat 2168.086 kb on + strandat 2168.086 kb on + strandat 2168.086 kb on + strandat 2168.087 kb on - strandat 2168.087 kb on - strandat 2168.087 kb on - strandat 2168.108 kb on - strandat 2168.108 kb on - strandat 2168.108 kb on - strandat 2168.150 kb on + strandat 2168.249 kb on + strandat 2168.249 kb on + strandat 2168.250 kb on - strandat 2168.298 kb on + strandat 2168.334 kb on - strandat 2168.356 kb on + strandat 2168.357 kb on - strandat 2168.357 kb on - strandat 2168.393 kb on + strandat 2168.418 kb on + strandat 2168.419 kb on - strandat 2168.476 kb on + strandat 2168.516 kb on + strandat 2169.787 kb on + strandat 2169.787 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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2,167,862 + -0.4
2,167,979 + +1.2
2,167,980 - +1.3
2,167,985 + -1.8
2,168,024 + +1.2
2,168,025 - -1.4
2,168,025 - +0.8
2,168,057 + -0.4
2,168,058 - -0.6
2,168,076 + +0.6
2,168,077 - +0.1
2,168,086 + +0.6
2,168,086 + +0.2
2,168,086 + +0.4
2,168,086 + +0.3
2,168,087 - +1.1
2,168,087 - +0.5
2,168,087 - -0.3
2,168,108 - +0.8
2,168,108 - +0.5
2,168,108 - -0.0
2,168,150 + -0.2
2,168,249 + +0.6
2,168,249 + +1.8
2,168,250 - +0.4
2,168,298 + -0.7
2,168,334 - -0.0
2,168,356 + +0.3
2,168,357 - +0.9
2,168,357 - -0.1
2,168,393 + +0.1
2,168,418 + -0.0
2,168,419 - -0.6
2,168,476 + +1.0
2,168,516 + +0.8
2,169,787 + -0.4
2,169,787 + -1.4

Or see this region's nucleotide sequence