Strain Fitness in Serratia liquefaciens MT49 around IAI46_06555

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06550 and IAI46_06555 are separated by 108 nucleotidesIAI46_06555 and IAI46_06560 are separated by 4 nucleotides IAI46_06550: IAI46_06550 - excinuclease ABC subunit B, at 1,395,927 to 1,397,939 _06550 IAI46_06555: IAI46_06555 - DUF2132 domain-containing protein, at 1,398,048 to 1,398,305 _06555 IAI46_06560: IAI46_06560 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,398,310 to 1,399,227 _06560 Position (kb) 1398 1399Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1397.093 kb on + strand, within IAI46_06550at 1397.093 kb on + strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.094 kb on - strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.097 kb on + strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.098 kb on - strand, within IAI46_06550at 1397.150 kb on + strand, within IAI46_06550at 1397.349 kb on + strand, within IAI46_06550at 1397.350 kb on - strand, within IAI46_06550at 1397.558 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.576 kb on + strand, within IAI46_06550at 1397.577 kb on - strand, within IAI46_06550at 1397.583 kb on + strand, within IAI46_06550at 1397.583 kb on + strand, within IAI46_06550at 1397.584 kb on - strand, within IAI46_06550at 1397.680 kb on + strand, within IAI46_06550at 1397.680 kb on + strand, within IAI46_06550at 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.847 kb on + strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.848 kb on - strandat 1397.849 kb on + strandat 1397.979 kb on - strandat 1397.979 kb on - strandat 1397.979 kb on - strandat 1398.031 kb on - strandat 1398.107 kb on + strand, within IAI46_06555at 1398.246 kb on + strand, within IAI46_06555at 1398.304 kb on - strandat 1398.326 kb on - strandat 1398.326 kb on - strandat 1398.380 kb on + strandat 1398.548 kb on - strand, within IAI46_06560at 1398.572 kb on + strand, within IAI46_06560at 1398.573 kb on - strand, within IAI46_06560at 1398.579 kb on + strand, within IAI46_06560at 1398.580 kb on - strand, within IAI46_06560at 1398.610 kb on - strand, within IAI46_06560at 1398.690 kb on + strand, within IAI46_06560at 1398.901 kb on + strand, within IAI46_06560at 1398.902 kb on - strand, within IAI46_06560at 1399.117 kb on - strand, within IAI46_06560at 1399.135 kb on + strand, within IAI46_06560at 1399.136 kb on - strandat 1399.136 kb on - strandat 1399.136 kb on - strandat 1399.183 kb on + strandat 1399.237 kb on + strandat 1399.238 kb on - strandat 1399.249 kb on + strandat 1399.261 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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1,397,093 + IAI46_06550 0.58 +0.4
1,397,093 + IAI46_06550 0.58 -0.7
1,397,094 - IAI46_06550 0.58 -1.4
1,397,094 - IAI46_06550 0.58 +0.3
1,397,094 - IAI46_06550 0.58 +0.1
1,397,097 + IAI46_06550 0.58 -0.9
1,397,097 + IAI46_06550 0.58 -0.3
1,397,097 + IAI46_06550 0.58 -0.9
1,397,097 + IAI46_06550 0.58 -0.4
1,397,097 + IAI46_06550 0.58 -0.1
1,397,097 + IAI46_06550 0.58 +1.2
1,397,097 + IAI46_06550 0.58 +1.3
1,397,097 + IAI46_06550 0.58 +1.0
1,397,098 - IAI46_06550 0.58 +0.2
1,397,098 - IAI46_06550 0.58 -1.4
1,397,098 - IAI46_06550 0.58 +1.9
1,397,098 - IAI46_06550 0.58 -0.3
1,397,098 - IAI46_06550 0.58 +0.2
1,397,098 - IAI46_06550 0.58 -0.1
1,397,098 - IAI46_06550 0.58 +1.0
1,397,150 + IAI46_06550 0.61 -0.0
1,397,349 + IAI46_06550 0.71 +0.3
1,397,350 - IAI46_06550 0.71 -1.3
1,397,558 + IAI46_06550 0.81 +0.4
1,397,576 + IAI46_06550 0.82 -0.2
1,397,576 + IAI46_06550 0.82 +0.1
1,397,576 + IAI46_06550 0.82 +0.5
1,397,577 - IAI46_06550 0.82 +0.3
1,397,583 + IAI46_06550 0.82 -0.4
1,397,583 + IAI46_06550 0.82 +0.3
1,397,584 - IAI46_06550 0.82 -0.4
1,397,680 + IAI46_06550 0.87 -0.2
1,397,680 + IAI46_06550 0.87 +0.2
1,397,847 + +1.0
1,397,847 + -0.1
1,397,847 + +0.5
1,397,847 + +0.6
1,397,847 + -0.7
1,397,848 - +1.7
1,397,848 - -0.2
1,397,848 - -0.9
1,397,848 - +0.3
1,397,849 + -0.3
1,397,979 - +0.4
1,397,979 - +0.2
1,397,979 - +0.0
1,398,031 - -0.2
1,398,107 + IAI46_06555 0.23 -2.8
1,398,246 + IAI46_06555 0.77 -0.5
1,398,304 - -0.6
1,398,326 - -0.1
1,398,326 - +0.6
1,398,380 + -0.7
1,398,548 - IAI46_06560 0.26 +1.3
1,398,572 + IAI46_06560 0.29 +0.9
1,398,573 - IAI46_06560 0.29 +0.1
1,398,579 + IAI46_06560 0.29 +0.8
1,398,580 - IAI46_06560 0.29 +0.4
1,398,610 - IAI46_06560 0.33 -0.0
1,398,690 + IAI46_06560 0.41 -0.7
1,398,901 + IAI46_06560 0.64 +0.5
1,398,902 - IAI46_06560 0.64 -0.5
1,399,117 - IAI46_06560 0.88 -1.3
1,399,135 + IAI46_06560 0.90 +0.1
1,399,136 - -0.9
1,399,136 - -0.9
1,399,136 - +1.0
1,399,183 + +0.1
1,399,237 + -0.1
1,399,238 - +0.9
1,399,249 + -2.3
1,399,261 + -0.4

Or see this region's nucleotide sequence