Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_06550 and IAI46_06555 are separated by 108 nucleotides IAI46_06555 and IAI46_06560 are separated by 4 nucleotides
IAI46_06550: IAI46_06550 - excinuclease ABC subunit B, at 1,395,927 to 1,397,939
_06550
IAI46_06555: IAI46_06555 - DUF2132 domain-containing protein, at 1,398,048 to 1,398,305
_06555
IAI46_06560: IAI46_06560 - uridine diphosphate-N-acetylglucosamine-binding protein YvcK, at 1,398,310 to 1,399,227
_06560
Position (kb)
1398
1399 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1397.093 kb on + strand, within IAI46_06550 at 1397.093 kb on + strand, within IAI46_06550 at 1397.094 kb on - strand, within IAI46_06550 at 1397.094 kb on - strand, within IAI46_06550 at 1397.094 kb on - strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.097 kb on + strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.098 kb on - strand, within IAI46_06550 at 1397.150 kb on + strand, within IAI46_06550 at 1397.349 kb on + strand, within IAI46_06550 at 1397.350 kb on - strand, within IAI46_06550 at 1397.558 kb on + strand, within IAI46_06550 at 1397.576 kb on + strand, within IAI46_06550 at 1397.576 kb on + strand, within IAI46_06550 at 1397.576 kb on + strand, within IAI46_06550 at 1397.577 kb on - strand, within IAI46_06550 at 1397.583 kb on + strand, within IAI46_06550 at 1397.583 kb on + strand, within IAI46_06550 at 1397.584 kb on - strand, within IAI46_06550 at 1397.680 kb on + strand, within IAI46_06550 at 1397.680 kb on + strand, within IAI46_06550 at 1397.847 kb on + strand at 1397.847 kb on + strand at 1397.847 kb on + strand at 1397.847 kb on + strand at 1397.847 kb on + strand at 1397.848 kb on - strand at 1397.848 kb on - strand at 1397.848 kb on - strand at 1397.848 kb on - strand at 1397.849 kb on + strand at 1397.979 kb on - strand at 1397.979 kb on - strand at 1397.979 kb on - strand at 1398.031 kb on - strand at 1398.107 kb on + strand, within IAI46_06555 at 1398.246 kb on + strand, within IAI46_06555 at 1398.304 kb on - strand at 1398.326 kb on - strand at 1398.326 kb on - strand at 1398.380 kb on + strand at 1398.548 kb on - strand, within IAI46_06560 at 1398.572 kb on + strand, within IAI46_06560 at 1398.573 kb on - strand, within IAI46_06560 at 1398.579 kb on + strand, within IAI46_06560 at 1398.580 kb on - strand, within IAI46_06560 at 1398.610 kb on - strand, within IAI46_06560 at 1398.690 kb on + strand, within IAI46_06560 at 1398.901 kb on + strand, within IAI46_06560 at 1398.902 kb on - strand, within IAI46_06560 at 1399.117 kb on - strand, within IAI46_06560 at 1399.135 kb on + strand, within IAI46_06560 at 1399.136 kb on - strand at 1399.136 kb on - strand at 1399.136 kb on - strand at 1399.183 kb on + strand at 1399.237 kb on + strand at 1399.238 kb on - strand at 1399.249 kb on + strand at 1399.261 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 1,397,093 + IAI46_06550 0.58 +0.4 1,397,093 + IAI46_06550 0.58 -0.7 1,397,094 - IAI46_06550 0.58 -1.4 1,397,094 - IAI46_06550 0.58 +0.3 1,397,094 - IAI46_06550 0.58 +0.1 1,397,097 + IAI46_06550 0.58 -0.9 1,397,097 + IAI46_06550 0.58 -0.3 1,397,097 + IAI46_06550 0.58 -0.9 1,397,097 + IAI46_06550 0.58 -0.4 1,397,097 + IAI46_06550 0.58 -0.1 1,397,097 + IAI46_06550 0.58 +1.2 1,397,097 + IAI46_06550 0.58 +1.3 1,397,097 + IAI46_06550 0.58 +1.0 1,397,098 - IAI46_06550 0.58 +0.2 1,397,098 - IAI46_06550 0.58 -1.4 1,397,098 - IAI46_06550 0.58 +1.9 1,397,098 - IAI46_06550 0.58 -0.3 1,397,098 - IAI46_06550 0.58 +0.2 1,397,098 - IAI46_06550 0.58 -0.1 1,397,098 - IAI46_06550 0.58 +1.0 1,397,150 + IAI46_06550 0.61 -0.0 1,397,349 + IAI46_06550 0.71 +0.3 1,397,350 - IAI46_06550 0.71 -1.3 1,397,558 + IAI46_06550 0.81 +0.4 1,397,576 + IAI46_06550 0.82 -0.2 1,397,576 + IAI46_06550 0.82 +0.1 1,397,576 + IAI46_06550 0.82 +0.5 1,397,577 - IAI46_06550 0.82 +0.3 1,397,583 + IAI46_06550 0.82 -0.4 1,397,583 + IAI46_06550 0.82 +0.3 1,397,584 - IAI46_06550 0.82 -0.4 1,397,680 + IAI46_06550 0.87 -0.2 1,397,680 + IAI46_06550 0.87 +0.2 1,397,847 + +1.0 1,397,847 + -0.1 1,397,847 + +0.5 1,397,847 + +0.6 1,397,847 + -0.7 1,397,848 - +1.7 1,397,848 - -0.2 1,397,848 - -0.9 1,397,848 - +0.3 1,397,849 + -0.3 1,397,979 - +0.4 1,397,979 - +0.2 1,397,979 - +0.0 1,398,031 - -0.2 1,398,107 + IAI46_06555 0.23 -2.8 1,398,246 + IAI46_06555 0.77 -0.5 1,398,304 - -0.6 1,398,326 - -0.1 1,398,326 - +0.6 1,398,380 + -0.7 1,398,548 - IAI46_06560 0.26 +1.3 1,398,572 + IAI46_06560 0.29 +0.9 1,398,573 - IAI46_06560 0.29 +0.1 1,398,579 + IAI46_06560 0.29 +0.8 1,398,580 - IAI46_06560 0.29 +0.4 1,398,610 - IAI46_06560 0.33 -0.0 1,398,690 + IAI46_06560 0.41 -0.7 1,398,901 + IAI46_06560 0.64 +0.5 1,398,902 - IAI46_06560 0.64 -0.5 1,399,117 - IAI46_06560 0.88 -1.3 1,399,135 + IAI46_06560 0.90 +0.1 1,399,136 - -0.9 1,399,136 - -0.9 1,399,136 - +1.0 1,399,183 + +0.1 1,399,237 + -0.1 1,399,238 - +0.9 1,399,249 + -2.3 1,399,261 + -0.4
Or see this region's nucleotide sequence