Strain Fitness in Serratia liquefaciens MT49 around IAI46_05185

Experiment: Nickel (II) chloride 80 uM, anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nickel (II) chloride 80 uM, anaerobic
1,112,086	+		IAI46_05170	0.89	+0.2
1,112,087	-		IAI46_05170	0.89	+0.3
1,112,087	-		IAI46_05170	0.89	-0.0
1,112,087	-		IAI46_05170	0.89	+0.9
1,112,088	+		IAI46_05170	0.89	-0.3
1,112,088	+		IAI46_05170	0.89	-0.5
1,112,089	-		IAI46_05170	0.89	+0.5
1,112,131	-				-0.0
1,112,131	-				-2.4
1,112,175	-				+0.3
1,112,297	+				-0.1
1,112,298	-				+0.7
1,112,329	-		IAI46_05175	0.23	-0.2
1,112,358	-		IAI46_05175	0.44	-0.8
1,112,535	-		IAI46_05180	0.34	+0.3
1,112,535	-		IAI46_05180	0.34	+0.2
1,112,535	-		IAI46_05180	0.34	+1.0
1,112,535	-		IAI46_05180	0.34	-0.0
1,112,537	+		IAI46_05180	0.35	+1.1
1,112,537	+		IAI46_05180	0.35	-0.5
1,112,566	-		IAI46_05180	0.46	-1.1
1,112,573	+		IAI46_05180	0.49	+0.6
1,112,573	+		IAI46_05180	0.49	-0.1
1,112,574	-		IAI46_05180	0.49	+0.4
1,112,574	-		IAI46_05180	0.49	-0.2
1,112,666	-		IAI46_05180	0.85	+0.4
1,112,673	+		IAI46_05180	0.88	+0.6
1,112,691	+				-0.0
1,112,691	+				-0.0
1,112,770	-				-0.2
1,112,770	-				-0.1
1,112,794	-				-0.7
1,112,843	+				-1.6
1,112,844	-				+0.7
1,112,880	+				-0.2
1,112,881	-				+0.9
1,112,912	+				-0.4
1,112,912	+				+1.2
1,113,124	+				+1.1
1,113,124	+				-0.0
1,113,125	-				-0.2
1,113,125	-				-0.3
1,113,125	-				-0.0
1,113,129	-				-0.4
1,113,129	-				+0.5
1,113,138	-				-0.2
1,113,138	-				-0.4
1,113,227	+		IAI46_05185	0.11	+0.6
1,113,227	+		IAI46_05185	0.11	-0.0
1,113,228	-		IAI46_05185	0.11	+0.5
1,113,228	-		IAI46_05185	0.11	+0.7
1,113,228	-		IAI46_05185	0.11	-0.6
1,113,228	-		IAI46_05185	0.11	-0.2
1,113,228	-		IAI46_05185	0.11	-0.5
1,113,228	-		IAI46_05185	0.11	+0.7
1,113,228	-		IAI46_05185	0.11	+0.3
1,113,256	-		IAI46_05185	0.12	-2.2
1,113,357	+		IAI46_05185	0.15	-0.3
1,113,357	+		IAI46_05185	0.15	+0.2
1,113,381	-		IAI46_05185	0.16	-0.0
1,113,402	+		IAI46_05185	0.17	-0.6
1,113,402	+		IAI46_05185	0.17	+0.6
1,113,403	-		IAI46_05185	0.17	-0.0
1,113,441	+		IAI46_05185	0.18	+0.5
1,113,448	+		IAI46_05185	0.18	-1.3
1,113,524	-		IAI46_05185	0.20	-0.3
1,113,574	+		IAI46_05185	0.22	+1.1
1,113,575	-		IAI46_05185	0.22	-0.5
1,113,575	-		IAI46_05185	0.22	+0.6
1,113,577	-		IAI46_05185	0.22	-1.2
1,113,601	-		IAI46_05185	0.23	+0.7
1,113,617	-		IAI46_05185	0.23	-1.2
1,113,670	+		IAI46_05185	0.25	+1.0
1,113,670	+		IAI46_05185	0.25	+2.3
1,113,671	-		IAI46_05185	0.25	-0.8
1,113,676	+		IAI46_05185	0.25	+0.7
1,113,677	-		IAI46_05185	0.25	-0.3
1,113,759	+		IAI46_05185	0.28	+0.5
1,113,760	-		IAI46_05185	0.28	+0.0
1,113,760	-		IAI46_05185	0.28	-0.1
1,113,760	-		IAI46_05185	0.28	+0.0
1,113,760	-		IAI46_05185	0.28	-1.1
1,113,862	+		IAI46_05185	0.31	+1.1
1,113,863	-		IAI46_05185	0.31	+1.0
1,113,963	-		IAI46_05185	0.34	+0.6
1,114,105	+		IAI46_05185	0.39	+0.4
1,114,105	+		IAI46_05185	0.39	+0.7
1,114,106	-		IAI46_05185	0.39	-1.0
1,114,106	-		IAI46_05185	0.39	-0.8
1,114,243	-		IAI46_05185	0.43	+0.3
1,114,399	-		IAI46_05185	0.48	+0.2
1,114,399	-		IAI46_05185	0.48	-0.2
1,114,399	-		IAI46_05185	0.48	+0.3
1,114,433	-		IAI46_05185	0.49	+0.3
1,114,433	-		IAI46_05185	0.49	+0.1
1,114,440	-		IAI46_05185	0.50	-0.6
1,114,453	-		IAI46_05185	0.50	+0.5
1,114,508	-		IAI46_05185	0.52	-0.7
1,114,508	-		IAI46_05185	0.52	-0.5
1,114,773	-		IAI46_05185	0.60	-0.1
1,114,838	-		IAI46_05185	0.62	+0.4
1,114,838	-		IAI46_05185	0.62	+0.1
1,114,838	-		IAI46_05185	0.62	-1.8
1,114,850	+		IAI46_05185	0.63	+1.1
1,114,851	-		IAI46_05185	0.63	-0.8
1,114,905	-		IAI46_05185	0.64	+0.8
1,114,905	-		IAI46_05185	0.64	-0.5
1,114,962	+		IAI46_05185	0.66	-0.1
1,114,962	+		IAI46_05185	0.66	-0.1
1,114,963	-		IAI46_05185	0.66	+0.2
1,114,963	-		IAI46_05185	0.66	+0.9
1,114,963	-		IAI46_05185	0.66	-0.5
1,115,007	-		IAI46_05185	0.68	-0.3
1,115,029	+		IAI46_05185	0.68	-0.1
1,115,050	-		IAI46_05185	0.69	-0.3
1,115,120	-		IAI46_05185	0.71	+0.4
1,115,187	+		IAI46_05185	0.73	+0.6
1,115,187	+		IAI46_05185	0.73	+0.8
1,115,188	-		IAI46_05185	0.73	-0.9
1,115,188	-		IAI46_05185	0.73	-1.2
1,115,206	-		IAI46_05185	0.74	-0.5
1,115,266	+		IAI46_05185	0.76	-1.1
1,115,267	-		IAI46_05185	0.76	-0.2
1,115,447	-		IAI46_05185	0.82	-0.7
1,115,474	-		IAI46_05185	0.82	-0.2
1,115,474	-		IAI46_05185	0.82	+0.5
1,115,474	-		IAI46_05185	0.82	+0.4
1,115,484	+		IAI46_05185	0.83	-0.3
1,115,484	+		IAI46_05185	0.83	-0.9
1,115,485	-		IAI46_05185	0.83	-0.3
1,115,485	-		IAI46_05185	0.83	-0.2
1,115,533	+		IAI46_05185	0.84	-0.1
1,115,533	+		IAI46_05185	0.84	-2.0
1,115,559	+		IAI46_05185	0.85	-2.7
1,115,559	+		IAI46_05185	0.85	+0.3
1,115,560	-		IAI46_05185	0.85	-1.5
1,115,560	-		IAI46_05185	0.85	+0.9
1,115,678	+		IAI46_05185	0.89	-0.9
1,115,759	-				+0.5
1,115,759	-				+0.7
1,115,770	+				+0.4
1,115,799	+				-0.3
1,115,799	+				+2.4
1,115,799	+				+0.4
1,115,799	+				-0.7
1,115,799	+				+0.2
1,115,799	+				+0.2
1,115,799	+				-0.9
1,115,800	-				-1.2
1,115,800	-				-2.3
1,115,800	-				-0.0
1,115,800	-				-1.0
1,115,800	-				+0.2
1,115,800	-				+0.8
1,115,851	+				-1.6
1,115,851	+				-0.8
1,115,852	-				+0.6
1,115,852	-				+0.3
1,115,852	-				-0.1
1,115,884	-				+0.3
1,115,897	-				+0.8
1,115,897	-				+0.5
1,115,917	+				+0.9
1,115,917	+				-0.0
1,115,918	-				+0.1
1,115,918	-				-2.3
1,116,012	-				-0.8
1,116,012	-				+1.3
1,116,014	-				+0.8
1,116,022	+				+0.1
1,116,033	+				+0.5
1,116,222	+		IAI46_05190	0.15	-0.9
1,116,223	-		IAI46_05190	0.15	+0.8
1,116,223	-		IAI46_05190	0.15	+1.0
1,116,223	-		IAI46_05190	0.15	+0.5
1,116,251	-		IAI46_05190	0.17	-0.9
1,116,251	-		IAI46_05190	0.17	-0.1
1,116,257	-		IAI46_05190	0.18	+0.6
1,116,264	+		IAI46_05190	0.18	+2.5
1,116,264	+		IAI46_05190	0.18	+0.1
1,116,265	-		IAI46_05190	0.18	+0.8
1,116,282	+		IAI46_05190	0.20	+1.7
1,116,373	-		IAI46_05190	0.28	+0.4
1,116,590	+		IAI46_05190	0.46	-0.3
1,116,590	+		IAI46_05190	0.46	+0.2
1,116,590	+		IAI46_05190	0.46	+0.9
1,116,590	+		IAI46_05190	0.46	+0.4
1,116,710	+		IAI46_05190	0.56	-1.1
1,116,710	+		IAI46_05190	0.56	-1.5
1,116,711	-		IAI46_05190	0.56	-0.2
1,116,800	+		IAI46_05190	0.63	-0.4
1,116,810	+		IAI46_05190	0.64	+1.8
1,116,811	-		IAI46_05190	0.64	-0.2
1,116,811	-		IAI46_05190	0.64	-0.3
1,116,818	+		IAI46_05190	0.65	+0.4
1,116,818	+		IAI46_05190	0.65	-1.7
1,116,819	-		IAI46_05190	0.65	-0.8
1,116,819	-		IAI46_05190	0.65	-0.3
1,116,819	-		IAI46_05190	0.65	-0.5
1,116,914	+		IAI46_05190	0.73	-1.2
1,116,914	+		IAI46_05190	0.73	+0.1
1,116,914	+		IAI46_05190	0.73	-0.6
1,116,915	-		IAI46_05190	0.73	+0.9
1,116,927	-		IAI46_05190	0.74	+0.5
1,116,930	+		IAI46_05190	0.74	+0.9
1,116,958	-		IAI46_05190	0.77	+1.0
1,116,983	-		IAI46_05190	0.79	+0.0
1,116,991	-		IAI46_05190	0.80	+0.0
1,117,003	-		IAI46_05190	0.81	+0.7
1,117,003	-		IAI46_05190	0.81	+1.0