Strain Fitness in Serratia liquefaciens MT49 around IAI46_04310

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04300 and IAI46_04305 are separated by 162 nucleotidesIAI46_04305 and IAI46_04310 overlap by 4 nucleotidesIAI46_04310 and IAI46_04315 overlap by 4 nucleotidesIAI46_04315 and IAI46_04320 are separated by 13 nucleotides IAI46_04300: IAI46_04300 - pyridoxal phosphate-dependent aminotransferase, at 922,634 to 923,794 _04300 IAI46_04305: IAI46_04305 - methylthioribulose 1-phosphate dehydratase, at 923,957 to 924,571 _04305 IAI46_04310: IAI46_04310 - acireductone synthase, at 924,568 to 925,257 _04310 IAI46_04315: IAI46_04315 - acireductone dioxygenase, at 925,254 to 925,796 _04315 IAI46_04320: IAI46_04320 - S-methyl-5-thioribose-1-phosphate isomerase, at 925,810 to 926,838 _04320 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1 2at 923.607 kb on + strand, within IAI46_04300at 923.608 kb on - strand, within IAI46_04300at 923.795 kb on - strandat 923.795 kb on - strandat 923.795 kb on - strandat 923.802 kb on + strandat 923.803 kb on - strandat 923.803 kb on - strandat 923.806 kb on - strandat 923.806 kb on - strandat 923.818 kb on + strandat 923.819 kb on - strandat 923.832 kb on + strandat 923.833 kb on - strandat 923.833 kb on - strandat 923.834 kb on + strandat 923.835 kb on - strandat 923.848 kb on + strandat 923.848 kb on + strandat 923.849 kb on - strandat 923.849 kb on - strandat 923.869 kb on - strandat 923.869 kb on - strandat 923.900 kb on + strandat 923.901 kb on - strandat 923.915 kb on - strandat 923.938 kb on + strandat 923.938 kb on + strandat 923.939 kb on - strandat 923.939 kb on - strandat 923.939 kb on - strandat 923.978 kb on - strandat 924.193 kb on + strand, within IAI46_04305at 924.193 kb on + strand, within IAI46_04305at 924.194 kb on - strand, within IAI46_04305at 924.239 kb on - strand, within IAI46_04305at 924.306 kb on - strand, within IAI46_04305at 924.306 kb on - strand, within IAI46_04305at 924.308 kb on + strand, within IAI46_04305at 924.354 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.440 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.470 kb on + strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.471 kb on - strand, within IAI46_04305at 924.555 kb on + strandat 924.601 kb on - strandat 924.601 kb on - strandat 924.669 kb on + strand, within IAI46_04310at 924.750 kb on + strand, within IAI46_04310at 924.762 kb on + strand, within IAI46_04310at 924.763 kb on - strand, within IAI46_04310at 924.783 kb on + strand, within IAI46_04310at 924.875 kb on + strand, within IAI46_04310at 924.876 kb on - strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.899 kb on + strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.900 kb on - strand, within IAI46_04310at 924.929 kb on + strand, within IAI46_04310at 924.931 kb on + strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.932 kb on - strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 924.937 kb on + strand, within IAI46_04310at 925.068 kb on + strand, within IAI46_04310at 925.069 kb on - strand, within IAI46_04310at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.325 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.425 kb on + strand, within IAI46_04315at 925.426 kb on - strand, within IAI46_04315at 925.798 kb on - strandat 925.925 kb on + strand, within IAI46_04320at 925.926 kb on - strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.052 kb on + strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.070 kb on - strand, within IAI46_04320at 926.087 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.111 kb on + strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.112 kb on - strand, within IAI46_04320at 926.232 kb on - strand, within IAI46_04320at 926.239 kb on - strand, within IAI46_04320

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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923,607 + IAI46_04300 0.84 +0.9
923,608 - IAI46_04300 0.84 +0.3
923,795 - +0.7
923,795 - +0.9
923,795 - -0.3
923,802 + -0.1
923,803 - +0.2
923,803 - -0.4
923,806 - -0.7
923,806 - -0.1
923,818 + -0.0
923,819 - -0.4
923,832 + +0.2
923,833 - +0.1
923,833 - +0.4
923,834 + -0.1
923,835 - +0.2
923,848 + -0.1
923,848 + -1.9
923,849 - -1.6
923,849 - +1.5
923,869 - +0.4
923,869 - -0.3
923,900 + +0.0
923,901 - -2.2
923,915 - +0.1
923,938 + -0.3
923,938 + -1.3
923,939 - +0.0
923,939 - -0.1
923,939 - -0.0
923,978 - -1.2
924,193 + IAI46_04305 0.38 +1.0
924,193 + IAI46_04305 0.38 +0.0
924,194 - IAI46_04305 0.39 +1.1
924,239 - IAI46_04305 0.46 -0.7
924,306 - IAI46_04305 0.57 -1.3
924,306 - IAI46_04305 0.57 +0.9
924,308 + IAI46_04305 0.57 +0.1
924,354 + IAI46_04305 0.65 +0.8
924,440 + IAI46_04305 0.79 -0.5
924,440 + IAI46_04305 0.79 -0.1
924,470 + IAI46_04305 0.83 +0.4
924,470 + IAI46_04305 0.83 +0.3
924,471 - IAI46_04305 0.84 +0.7
924,471 - IAI46_04305 0.84 -0.2
924,555 + +0.9
924,601 - +0.1
924,601 - +0.1
924,669 + IAI46_04310 0.15 -2.3
924,750 + IAI46_04310 0.26 +0.5
924,762 + IAI46_04310 0.28 +0.3
924,763 - IAI46_04310 0.28 -0.3
924,783 + IAI46_04310 0.31 -1.0
924,875 + IAI46_04310 0.44 +1.8
924,876 - IAI46_04310 0.45 -0.1
924,899 + IAI46_04310 0.48 +1.0
924,899 + IAI46_04310 0.48 +1.1
924,899 + IAI46_04310 0.48 +0.3
924,899 + IAI46_04310 0.48 -0.8
924,900 - IAI46_04310 0.48 -0.6
924,900 - IAI46_04310 0.48 +0.6
924,929 + IAI46_04310 0.52 +1.3
924,931 + IAI46_04310 0.53 -0.7
924,932 - IAI46_04310 0.53 -1.2
924,932 - IAI46_04310 0.53 -0.6
924,937 + IAI46_04310 0.53 +1.1
924,937 + IAI46_04310 0.53 +0.3
925,068 + IAI46_04310 0.72 -1.1
925,069 - IAI46_04310 0.73 +0.6
925,325 + IAI46_04315 0.13 +0.2
925,325 + IAI46_04315 0.13 -0.8
925,325 + IAI46_04315 0.13 -0.3
925,325 + IAI46_04315 0.13 -0.1
925,325 + IAI46_04315 0.13 -0.9
925,425 + IAI46_04315 0.31 -0.2
925,425 + IAI46_04315 0.31 +0.5
925,426 - IAI46_04315 0.32 -0.5
925,798 - -0.6
925,925 + IAI46_04320 0.11 -1.6
925,926 - IAI46_04320 0.11 -0.0
926,052 + IAI46_04320 0.24 -0.8
926,052 + IAI46_04320 0.24 +0.3
926,052 + IAI46_04320 0.24 +0.3
926,070 - IAI46_04320 0.25 +0.6
926,070 - IAI46_04320 0.25 +1.3
926,070 - IAI46_04320 0.25 -0.4
926,087 + IAI46_04320 0.27 +0.0
926,111 + IAI46_04320 0.29 +0.2
926,111 + IAI46_04320 0.29 -0.1
926,111 + IAI46_04320 0.29 -0.2
926,112 - IAI46_04320 0.29 +1.0
926,112 - IAI46_04320 0.29 +1.0
926,232 - IAI46_04320 0.41 +0.3
926,239 - IAI46_04320 0.42 +0.7

Or see this region's nucleotide sequence