Strain Fitness in Serratia liquefaciens MT49 around IAI46_04120

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04115 and IAI46_04120 are separated by 106 nucleotidesIAI46_04120 and IAI46_04125 are separated by 243 nucleotides IAI46_04115: IAI46_04115 - LysR family transcriptional regulator, at 886,739 to 887,626 _04115 IAI46_04120: IAI46_04120 - MFS transporter, at 887,733 to 888,908 _04120 IAI46_04125: IAI46_04125 - endonuclease/exonuclease/phosphatase family protein, at 889,152 to 889,946 _04125 Position (kb) 887 888 889Strain fitness (log2 ratio) -2 -1 0 1 2at 886.810 kb on - strandat 886.812 kb on + strandat 886.900 kb on + strand, within IAI46_04115at 886.901 kb on - strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.047 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.100 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.112 kb on + strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.113 kb on - strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.155 kb on + strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.156 kb on - strand, within IAI46_04115at 887.213 kb on - strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.230 kb on + strand, within IAI46_04115at 887.231 kb on - strand, within IAI46_04115at 887.272 kb on - strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.306 kb on + strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.307 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.409 kb on - strand, within IAI46_04115at 887.599 kb on + strandat 887.677 kb on + strandat 887.678 kb on - strandat 887.694 kb on + strandat 887.746 kb on + strandat 887.746 kb on + strandat 887.747 kb on - strandat 887.747 kb on - strandat 887.798 kb on - strandat 887.800 kb on + strandat 887.800 kb on + strandat 887.801 kb on - strandat 887.801 kb on - strandat 887.806 kb on + strandat 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.871 kb on + strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.872 kb on - strand, within IAI46_04120at 887.966 kb on + strand, within IAI46_04120at 887.967 kb on - strand, within IAI46_04120at 888.052 kb on + strand, within IAI46_04120at 888.052 kb on + strand, within IAI46_04120at 888.072 kb on - strand, within IAI46_04120at 888.074 kb on + strand, within IAI46_04120at 888.075 kb on - strand, within IAI46_04120at 888.080 kb on + strand, within IAI46_04120at 888.080 kb on + strand, within IAI46_04120at 888.125 kb on + strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.126 kb on - strand, within IAI46_04120at 888.163 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.227 kb on + strand, within IAI46_04120at 888.278 kb on + strand, within IAI46_04120at 888.369 kb on + strand, within IAI46_04120at 888.379 kb on + strand, within IAI46_04120at 888.380 kb on - strand, within IAI46_04120at 888.545 kb on + strand, within IAI46_04120at 888.599 kb on + strand, within IAI46_04120at 888.600 kb on - strand, within IAI46_04120at 888.637 kb on + strand, within IAI46_04120at 888.655 kb on + strand, within IAI46_04120at 888.656 kb on - strand, within IAI46_04120at 888.656 kb on - strand, within IAI46_04120at 888.672 kb on + strand, within IAI46_04120at 888.673 kb on - strand, within IAI46_04120at 888.712 kb on + strand, within IAI46_04120at 888.712 kb on + strand, within IAI46_04120at 888.713 kb on - strand, within IAI46_04120at 888.713 kb on - strand, within IAI46_04120at 888.909 kb on + strandat 888.960 kb on + strandat 888.960 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.991 kb on + strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.992 kb on - strandat 888.993 kb on + strandat 888.993 kb on + strandat 888.993 kb on + strandat 888.994 kb on - strandat 888.994 kb on - strandat 889.017 kb on - strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.044 kb on + strandat 889.045 kb on - strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.046 kb on + strandat 889.087 kb on - strandat 889.087 kb on - strandat 889.130 kb on + strandat 889.130 kb on + strandat 889.131 kb on - strandat 889.131 kb on - strandat 889.148 kb on + strandat 889.167 kb on + strandat 889.167 kb on + strandat 889.168 kb on - strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.179 kb on + strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.180 kb on - strandat 889.220 kb on + strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.221 kb on - strandat 889.223 kb on + strandat 889.257 kb on - strand, within IAI46_04125at 889.257 kb on - strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.295 kb on + strand, within IAI46_04125at 889.413 kb on + strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.414 kb on - strand, within IAI46_04125at 889.445 kb on - strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.497 kb on + strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.498 kb on - strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.563 kb on + strand, within IAI46_04125at 889.564 kb on - strand, within IAI46_04125at 889.602 kb on - strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.638 kb on + strand, within IAI46_04125at 889.639 kb on - strand, within IAI46_04125at 889.643 kb on + strand, within IAI46_04125at 889.644 kb on - strand, within IAI46_04125at 889.712 kb on + strand, within IAI46_04125at 889.764 kb on - strand, within IAI46_04125at 889.848 kb on - strand, within IAI46_04125at 889.895 kb on + strandat 889.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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886,810 - +0.2
886,812 + +0.1
886,900 + IAI46_04115 0.18 -0.1
886,901 - IAI46_04115 0.18 -0.7
887,047 + IAI46_04115 0.35 -0.3
887,047 + IAI46_04115 0.35 +1.3
887,100 + IAI46_04115 0.41 -0.3
887,100 + IAI46_04115 0.41 +0.6
887,100 + IAI46_04115 0.41 -0.2
887,112 + IAI46_04115 0.42 +0.1
887,112 + IAI46_04115 0.42 +0.3
887,112 + IAI46_04115 0.42 +0.1
887,112 + IAI46_04115 0.42 +0.6
887,113 - IAI46_04115 0.42 -0.7
887,113 - IAI46_04115 0.42 +0.4
887,113 - IAI46_04115 0.42 +0.3
887,155 + IAI46_04115 0.47 -1.6
887,155 + IAI46_04115 0.47 -1.6
887,156 - IAI46_04115 0.47 +0.5
887,156 - IAI46_04115 0.47 -1.3
887,213 - IAI46_04115 0.53 +0.6
887,230 + IAI46_04115 0.55 +0.5
887,230 + IAI46_04115 0.55 -0.5
887,231 - IAI46_04115 0.55 +0.3
887,272 - IAI46_04115 0.60 +0.3
887,306 + IAI46_04115 0.64 -0.8
887,306 + IAI46_04115 0.64 +0.8
887,307 - IAI46_04115 0.64 -0.6
887,307 - IAI46_04115 0.64 -1.8
887,409 - IAI46_04115 0.75 -0.6
887,409 - IAI46_04115 0.75 +0.4
887,599 + +0.2
887,677 + +0.3
887,678 - +0.8
887,694 + -1.2
887,746 + +1.5
887,746 + +1.5
887,747 - -0.4
887,747 - +0.4
887,798 - -0.1
887,800 + -0.0
887,800 + -0.1
887,801 - +0.1
887,801 - +0.8
887,806 + +0.3
887,871 + IAI46_04120 0.12 +0.3
887,871 + IAI46_04120 0.12 -0.3
887,871 + IAI46_04120 0.12 +0.4
887,871 + IAI46_04120 0.12 +0.0
887,871 + IAI46_04120 0.12 +0.3
887,871 + IAI46_04120 0.12 +0.6
887,871 + IAI46_04120 0.12 +0.0
887,872 - IAI46_04120 0.12 +0.1
887,872 - IAI46_04120 0.12 -0.1
887,872 - IAI46_04120 0.12 -1.3
887,966 + IAI46_04120 0.20 +0.6
887,967 - IAI46_04120 0.20 +0.5
888,052 + IAI46_04120 0.27 -1.2
888,052 + IAI46_04120 0.27 -0.1
888,072 - IAI46_04120 0.29 +0.1
888,074 + IAI46_04120 0.29 +1.0
888,075 - IAI46_04120 0.29 +1.0
888,080 + IAI46_04120 0.30 -0.1
888,080 + IAI46_04120 0.30 +1.1
888,125 + IAI46_04120 0.33 +1.6
888,126 - IAI46_04120 0.33 +0.6
888,126 - IAI46_04120 0.33 +0.6
888,126 - IAI46_04120 0.33 -0.3
888,163 + IAI46_04120 0.37 +0.1
888,227 + IAI46_04120 0.42 -1.0
888,227 + IAI46_04120 0.42 -0.3
888,227 + IAI46_04120 0.42 -0.3
888,278 + IAI46_04120 0.46 +0.7
888,369 + IAI46_04120 0.54 -1.4
888,379 + IAI46_04120 0.55 -0.1
888,380 - IAI46_04120 0.55 -0.6
888,545 + IAI46_04120 0.69 -0.3
888,599 + IAI46_04120 0.74 -0.2
888,600 - IAI46_04120 0.74 -0.2
888,637 + IAI46_04120 0.77 -0.7
888,655 + IAI46_04120 0.78 -0.3
888,656 - IAI46_04120 0.78 -0.6
888,656 - IAI46_04120 0.78 +0.4
888,672 + IAI46_04120 0.80 +0.7
888,673 - IAI46_04120 0.80 +0.1
888,712 + IAI46_04120 0.83 +0.5
888,712 + IAI46_04120 0.83 +1.4
888,713 - IAI46_04120 0.83 -0.7
888,713 - IAI46_04120 0.83 +0.4
888,909 + -0.2
888,960 + -0.8
888,960 + +0.0
888,991 + -0.5
888,991 + -0.0
888,991 + -0.5
888,991 + -0.4
888,991 + -0.9
888,991 + -0.3
888,991 + +0.2
888,992 - -1.1
888,992 - -1.1
888,992 - +1.5
888,992 - +1.6
888,992 - +0.7
888,992 - +0.4
888,992 - +0.2
888,993 + -0.2
888,993 + -0.4
888,993 + +0.1
888,994 - -2.3
888,994 - -0.6
889,017 - -1.1
889,044 + +0.3
889,044 + +0.8
889,044 + +1.1
889,045 - +0.2
889,046 + +0.4
889,046 + +1.2
889,046 + +0.2
889,087 - -0.3
889,087 - -0.9
889,130 + -1.4
889,130 + -0.3
889,131 - +1.1
889,131 - +0.3
889,148 + +0.3
889,167 + -0.3
889,167 + +0.8
889,168 - -0.6
889,179 + +0.9
889,179 + +0.9
889,179 + +1.0
889,180 - +1.0
889,180 - +0.6
889,180 - +0.0
889,180 - +1.4
889,220 + +0.5
889,221 - +0.7
889,221 - +1.0
889,221 - +0.5
889,223 + -0.4
889,257 - IAI46_04125 0.13 +0.4
889,257 - IAI46_04125 0.13 +0.3
889,295 + IAI46_04125 0.18 -0.0
889,295 + IAI46_04125 0.18 -0.5
889,413 + IAI46_04125 0.33 +0.4
889,414 - IAI46_04125 0.33 +0.1
889,414 - IAI46_04125 0.33 +0.8
889,445 - IAI46_04125 0.37 +0.1
889,497 + IAI46_04125 0.43 +1.1
889,497 + IAI46_04125 0.43 +0.9
889,497 + IAI46_04125 0.43 -0.1
889,498 - IAI46_04125 0.44 -0.9
889,498 - IAI46_04125 0.44 -0.9
889,498 - IAI46_04125 0.44 -0.9
889,498 - IAI46_04125 0.44 +0.9
889,498 - IAI46_04125 0.44 -0.7
889,563 + IAI46_04125 0.52 +0.2
889,563 + IAI46_04125 0.52 -0.6
889,564 - IAI46_04125 0.52 -0.6
889,602 - IAI46_04125 0.57 +0.1
889,638 + IAI46_04125 0.61 -0.2
889,638 + IAI46_04125 0.61 +0.5
889,638 + IAI46_04125 0.61 +0.4
889,638 + IAI46_04125 0.61 +0.3
889,639 - IAI46_04125 0.61 +1.3
889,643 + IAI46_04125 0.62 +0.7
889,644 - IAI46_04125 0.62 -0.1
889,712 + IAI46_04125 0.70 +0.2
889,764 - IAI46_04125 0.77 -0.8
889,848 - IAI46_04125 0.88 +1.8
889,895 + -0.9
889,896 - +0.5

Or see this region's nucleotide sequence