Strain Fitness in Serratia liquefaciens MT49 around IAI46_04060

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04055 and IAI46_04060 overlap by 4 nucleotidesIAI46_04060 and IAI46_04065 overlap by 10 nucleotides IAI46_04055: IAI46_04055 - acyl-CoA synthetase, at 874,878 to 876,209 _04055 IAI46_04060: IAI46_04060 - hydroxymyristoyl-ACP dehydratase, at 876,206 to 876,550 _04060 IAI46_04065: IAI46_04065 - glycosyltransferase family 2 protein, at 876,541 to 878,259 _04065 Position (kb) 876 877Strain fitness (log2 ratio) -2 -1 0 1at 875.220 kb on - strand, within IAI46_04055at 875.263 kb on - strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.402 kb on + strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.403 kb on - strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.406 kb on + strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.407 kb on - strand, within IAI46_04055at 875.475 kb on + strand, within IAI46_04055at 875.650 kb on + strand, within IAI46_04055at 875.667 kb on + strand, within IAI46_04055at 875.752 kb on + strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.867 kb on - strand, within IAI46_04055at 875.889 kb on - strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.891 kb on + strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.892 kb on - strand, within IAI46_04055at 875.938 kb on + strand, within IAI46_04055at 875.939 kb on - strand, within IAI46_04055at 876.180 kb on + strandat 876.181 kb on - strandat 876.191 kb on - strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.205 kb on + strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.206 kb on - strandat 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.359 kb on + strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.360 kb on - strand, within IAI46_04060at 876.541 kb on - strandat 876.576 kb on + strandat 876.588 kb on + strandat 876.634 kb on + strandat 876.803 kb on - strand, within IAI46_04065at 876.852 kb on + strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.853 kb on - strand, within IAI46_04065at 876.854 kb on + strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.855 kb on - strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.916 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.946 kb on + strand, within IAI46_04065at 876.955 kb on + strand, within IAI46_04065at 876.956 kb on - strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.001 kb on + strand, within IAI46_04065at 877.002 kb on - strand, within IAI46_04065at 877.117 kb on + strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.118 kb on - strand, within IAI46_04065at 877.203 kb on + strand, within IAI46_04065at 877.212 kb on + strand, within IAI46_04065at 877.363 kb on + strand, within IAI46_04065at 877.446 kb on + strand, within IAI46_04065at 877.462 kb on + strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065at 877.463 kb on - strand, within IAI46_04065

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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875,220 - IAI46_04055 0.26 +0.9
875,263 - IAI46_04055 0.29 -0.1
875,402 + IAI46_04055 0.39 +0.4
875,402 + IAI46_04055 0.39 +0.5
875,402 + IAI46_04055 0.39 -1.8
875,402 + IAI46_04055 0.39 +0.3
875,402 + IAI46_04055 0.39 +0.6
875,403 - IAI46_04055 0.39 +0.7
875,403 - IAI46_04055 0.39 -2.2
875,403 - IAI46_04055 0.39 -0.2
875,403 - IAI46_04055 0.39 -0.1
875,403 - IAI46_04055 0.39 +0.0
875,403 - IAI46_04055 0.39 +0.1
875,403 - IAI46_04055 0.39 +0.2
875,403 - IAI46_04055 0.39 -0.3
875,403 - IAI46_04055 0.39 -0.5
875,406 + IAI46_04055 0.40 -0.7
875,406 + IAI46_04055 0.40 -1.3
875,406 + IAI46_04055 0.40 -0.8
875,406 + IAI46_04055 0.40 +0.1
875,406 + IAI46_04055 0.40 +0.0
875,406 + IAI46_04055 0.40 -1.4
875,407 - IAI46_04055 0.40 +0.2
875,407 - IAI46_04055 0.40 +0.7
875,407 - IAI46_04055 0.40 +0.4
875,475 + IAI46_04055 0.45 +0.6
875,650 + IAI46_04055 0.58 +1.4
875,667 + IAI46_04055 0.59 +0.3
875,752 + IAI46_04055 0.66 +1.1
875,867 - IAI46_04055 0.74 +0.3
875,867 - IAI46_04055 0.74 +1.6
875,867 - IAI46_04055 0.74 +0.1
875,889 - IAI46_04055 0.76 -0.6
875,891 + IAI46_04055 0.76 +0.3
875,891 + IAI46_04055 0.76 +0.3
875,891 + IAI46_04055 0.76 +0.4
875,892 - IAI46_04055 0.76 -0.2
875,892 - IAI46_04055 0.76 -0.5
875,892 - IAI46_04055 0.76 +1.7
875,938 + IAI46_04055 0.80 -0.3
875,939 - IAI46_04055 0.80 +0.6
876,180 + +0.3
876,181 - +0.7
876,191 - -0.5
876,205 + +0.4
876,205 + +0.9
876,205 + +0.7
876,206 - -0.2
876,206 - +0.7
876,206 - -0.1
876,359 + IAI46_04060 0.44 -0.2
876,359 + IAI46_04060 0.44 -0.5
876,359 + IAI46_04060 0.44 -0.2
876,359 + IAI46_04060 0.44 +0.7
876,359 + IAI46_04060 0.44 +0.6
876,360 - IAI46_04060 0.45 -0.8
876,360 - IAI46_04060 0.45 +0.1
876,541 - +0.4
876,576 + -0.4
876,588 + +0.0
876,634 + -0.6
876,803 - IAI46_04065 0.15 +0.2
876,852 + IAI46_04065 0.18 +0.9
876,853 - IAI46_04065 0.18 +0.0
876,853 - IAI46_04065 0.18 +0.4
876,854 + IAI46_04065 0.18 +0.5
876,855 - IAI46_04065 0.18 -0.5
876,855 - IAI46_04065 0.18 -0.2
876,855 - IAI46_04065 0.18 +1.2
876,855 - IAI46_04065 0.18 -0.4
876,916 + IAI46_04065 0.22 +1.7
876,916 + IAI46_04065 0.22 +0.4
876,916 + IAI46_04065 0.22 -1.0
876,916 + IAI46_04065 0.22 -0.3
876,916 + IAI46_04065 0.22 +0.6
876,946 + IAI46_04065 0.24 +0.2
876,946 + IAI46_04065 0.24 +0.6
876,955 + IAI46_04065 0.24 -0.3
876,956 - IAI46_04065 0.24 +0.2
877,001 + IAI46_04065 0.27 +0.5
877,001 + IAI46_04065 0.27 -0.4
877,002 - IAI46_04065 0.27 -1.1
877,117 + IAI46_04065 0.34 -0.6
877,118 - IAI46_04065 0.34 +0.2
877,118 - IAI46_04065 0.34 +0.7
877,118 - IAI46_04065 0.34 -0.8
877,118 - IAI46_04065 0.34 +0.7
877,203 + IAI46_04065 0.39 +0.3
877,212 + IAI46_04065 0.39 +1.0
877,363 + IAI46_04065 0.48 -2.1
877,446 + IAI46_04065 0.53 +0.0
877,462 + IAI46_04065 0.54 -1.1
877,463 - IAI46_04065 0.54 -1.4
877,463 - IAI46_04065 0.54 -0.0
877,463 - IAI46_04065 0.54 +0.1

Or see this region's nucleotide sequence