Strain Fitness in Serratia liquefaciens MT49 around IAI46_03985

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03980 and IAI46_03985 are separated by 131 nucleotidesIAI46_03985 and IAI46_03990 overlap by 1 nucleotidesIAI46_03990 and IAI46_03995 are separated by 130 nucleotides IAI46_03980: IAI46_03980 - outer membrane protein assembly factor BamD, at 860,197 to 860,928 _03980 IAI46_03985: IAI46_03985 - 23S rRNA pseudouridine(1911/1915/1917) synthase RluD, at 861,060 to 862,037 _03985 IAI46_03990: IAI46_03990 - polyphenol oxidase, at 862,037 to 862,768 _03990 IAI46_03995: IAI46_03995 - ATP-dependent chaperone ClpB, at 862,899 to 865,472 _03995 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 860.117 kb on - strandat 860.146 kb on - strandat 860.198 kb on + strandat 861.009 kb on + strandat 861.009 kb on + strandat 861.010 kb on - strandat 861.010 kb on - strandat 861.011 kb on + strandat 861.011 kb on + strandat 861.012 kb on - strandat 861.012 kb on - strandat 861.012 kb on - strandat 861.014 kb on + strandat 861.015 kb on - strandat 861.015 kb on - strandat 861.015 kb on - strandat 861.060 kb on - strandat 861.060 kb on - strandat 861.060 kb on - strandat 861.074 kb on - strandat 861.074 kb on - strandat 861.167 kb on - strand, within IAI46_03985at 861.167 kb on - strand, within IAI46_03985at 861.167 kb on - strand, within IAI46_03985at 861.271 kb on + strand, within IAI46_03985at 861.271 kb on + strand, within IAI46_03985at 861.272 kb on - strand, within IAI46_03985at 861.272 kb on - strand, within IAI46_03985at 861.272 kb on - strand, within IAI46_03985at 861.315 kb on - strand, within IAI46_03985at 861.315 kb on - strand, within IAI46_03985at 861.348 kb on - strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.423 kb on + strand, within IAI46_03985at 861.424 kb on - strand, within IAI46_03985at 861.426 kb on + strand, within IAI46_03985at 861.426 kb on + strand, within IAI46_03985at 861.426 kb on + strand, within IAI46_03985at 861.427 kb on - strand, within IAI46_03985at 861.427 kb on - strand, within IAI46_03985at 861.427 kb on - strand, within IAI46_03985at 861.499 kb on + strand, within IAI46_03985at 861.536 kb on - strand, within IAI46_03985at 861.536 kb on - strand, within IAI46_03985at 861.536 kb on - strand, within IAI46_03985at 861.536 kb on - strand, within IAI46_03985at 861.536 kb on - strand, within IAI46_03985at 861.570 kb on + strand, within IAI46_03985at 861.571 kb on - strand, within IAI46_03985at 861.609 kb on - strand, within IAI46_03985at 861.647 kb on + strand, within IAI46_03985at 861.648 kb on - strand, within IAI46_03985at 861.648 kb on - strand, within IAI46_03985at 861.702 kb on - strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.776 kb on + strand, within IAI46_03985at 861.777 kb on - strand, within IAI46_03985at 861.777 kb on - strand, within IAI46_03985at 861.777 kb on - strand, within IAI46_03985at 861.777 kb on - strand, within IAI46_03985at 861.788 kb on + strand, within IAI46_03985at 861.816 kb on + strand, within IAI46_03985at 861.816 kb on + strand, within IAI46_03985at 861.817 kb on - strand, within IAI46_03985at 861.917 kb on - strand, within IAI46_03985at 861.917 kb on - strand, within IAI46_03985at 861.919 kb on - strand, within IAI46_03985at 861.972 kb on - strandat 862.081 kb on - strandat 862.081 kb on - strandat 862.081 kb on - strandat 862.310 kb on + strand, within IAI46_03990at 862.430 kb on - strand, within IAI46_03990at 862.527 kb on + strand, within IAI46_03990at 862.552 kb on + strand, within IAI46_03990at 862.552 kb on + strand, within IAI46_03990at 862.552 kb on + strand, within IAI46_03990at 862.552 kb on + strand, within IAI46_03990at 862.600 kb on + strand, within IAI46_03990at 862.600 kb on + strand, within IAI46_03990at 862.601 kb on - strand, within IAI46_03990at 862.615 kb on + strand, within IAI46_03990at 862.615 kb on + strand, within IAI46_03990at 862.616 kb on - strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.619 kb on + strand, within IAI46_03990at 862.620 kb on - strand, within IAI46_03990at 862.620 kb on - strand, within IAI46_03990at 862.620 kb on - strand, within IAI46_03990at 862.624 kb on - strand, within IAI46_03990at 862.641 kb on + strand, within IAI46_03990at 862.641 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.663 kb on + strand, within IAI46_03990at 862.664 kb on - strand, within IAI46_03990at 862.664 kb on - strand, within IAI46_03990at 862.664 kb on - strand, within IAI46_03990at 862.684 kb on + strand, within IAI46_03990at 862.685 kb on - strand, within IAI46_03990at 862.716 kb on - strandat 862.764 kb on + strandat 862.767 kb on - strandat 862.804 kb on + strandat 862.804 kb on + strandat 862.805 kb on - strandat 862.805 kb on - strandat 862.805 kb on - strandat 862.805 kb on - strandat 862.816 kb on + strandat 862.819 kb on - strandat 862.830 kb on - strandat 862.860 kb on + strandat 862.861 kb on - strandat 862.871 kb on - strandat 862.898 kb on + strandat 862.899 kb on - strandat 862.899 kb on - strandat 862.916 kb on + strandat 862.916 kb on + strandat 862.917 kb on - strandat 862.917 kb on - strandat 862.920 kb on - strandat 862.920 kb on - strandat 862.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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860,117 - -0.6
860,146 - -0.4
860,198 + +0.2
861,009 + -0.6
861,009 + +0.7
861,010 - -0.4
861,010 - +0.4
861,011 + +0.4
861,011 + -0.6
861,012 - -1.3
861,012 - +0.0
861,012 - +0.0
861,014 + +0.4
861,015 - +0.0
861,015 - -0.6
861,015 - -2.6
861,060 - +0.0
861,060 - -1.5
861,060 - -0.1
861,074 - +0.0
861,074 - +0.4
861,167 - IAI46_03985 0.11 -0.4
861,167 - IAI46_03985 0.11 +0.0
861,167 - IAI46_03985 0.11 +0.8
861,271 + IAI46_03985 0.22 +0.2
861,271 + IAI46_03985 0.22 -1.1
861,272 - IAI46_03985 0.22 -0.5
861,272 - IAI46_03985 0.22 +0.0
861,272 - IAI46_03985 0.22 +0.2
861,315 - IAI46_03985 0.26 -1.2
861,315 - IAI46_03985 0.26 +0.2
861,348 - IAI46_03985 0.29 -0.6
861,423 + IAI46_03985 0.37 -0.7
861,423 + IAI46_03985 0.37 -1.2
861,423 + IAI46_03985 0.37 -0.6
861,423 + IAI46_03985 0.37 +0.7
861,423 + IAI46_03985 0.37 -1.2
861,423 + IAI46_03985 0.37 -0.8
861,424 - IAI46_03985 0.37 -1.2
861,426 + IAI46_03985 0.37 +1.0
861,426 + IAI46_03985 0.37 +1.3
861,426 + IAI46_03985 0.37 +0.1
861,427 - IAI46_03985 0.38 -1.1
861,427 - IAI46_03985 0.38 -0.2
861,427 - IAI46_03985 0.38 -1.4
861,499 + IAI46_03985 0.45 -0.8
861,536 - IAI46_03985 0.49 -1.7
861,536 - IAI46_03985 0.49 -1.7
861,536 - IAI46_03985 0.49 +1.1
861,536 - IAI46_03985 0.49 +0.2
861,536 - IAI46_03985 0.49 +0.4
861,570 + IAI46_03985 0.52 +0.5
861,571 - IAI46_03985 0.52 +0.7
861,609 - IAI46_03985 0.56 -2.1
861,647 + IAI46_03985 0.60 +0.9
861,648 - IAI46_03985 0.60 -0.8
861,648 - IAI46_03985 0.60 -1.3
861,702 - IAI46_03985 0.66 -0.3
861,776 + IAI46_03985 0.73 -0.3
861,776 + IAI46_03985 0.73 +2.0
861,776 + IAI46_03985 0.73 -0.5
861,776 + IAI46_03985 0.73 -0.2
861,776 + IAI46_03985 0.73 -0.9
861,776 + IAI46_03985 0.73 -0.3
861,776 + IAI46_03985 0.73 +0.7
861,777 - IAI46_03985 0.73 +1.1
861,777 - IAI46_03985 0.73 +0.1
861,777 - IAI46_03985 0.73 +0.9
861,777 - IAI46_03985 0.73 +0.1
861,788 + IAI46_03985 0.74 +0.1
861,816 + IAI46_03985 0.77 -1.5
861,816 + IAI46_03985 0.77 -2.6
861,817 - IAI46_03985 0.77 -1.8
861,917 - IAI46_03985 0.88 +0.4
861,917 - IAI46_03985 0.88 -0.9
861,919 - IAI46_03985 0.88 -0.5
861,972 - +1.6
862,081 - -0.2
862,081 - -0.1
862,081 - -0.1
862,310 + IAI46_03990 0.37 -0.3
862,430 - IAI46_03990 0.54 +0.9
862,527 + IAI46_03990 0.67 -1.0
862,552 + IAI46_03990 0.70 +0.4
862,552 + IAI46_03990 0.70 -0.5
862,552 + IAI46_03990 0.70 -2.9
862,552 + IAI46_03990 0.70 +0.9
862,600 + IAI46_03990 0.77 +0.6
862,600 + IAI46_03990 0.77 -0.5
862,601 - IAI46_03990 0.77 -0.2
862,615 + IAI46_03990 0.79 +0.5
862,615 + IAI46_03990 0.79 -0.0
862,616 - IAI46_03990 0.79 +0.1
862,619 + IAI46_03990 0.80 +0.4
862,619 + IAI46_03990 0.80 +1.0
862,619 + IAI46_03990 0.80 -0.2
862,619 + IAI46_03990 0.80 +0.7
862,619 + IAI46_03990 0.80 +0.5
862,619 + IAI46_03990 0.80 +0.7
862,620 - IAI46_03990 0.80 +0.3
862,620 - IAI46_03990 0.80 -2.1
862,620 - IAI46_03990 0.80 -0.2
862,624 - IAI46_03990 0.80 +0.2
862,641 + IAI46_03990 0.83 +0.4
862,641 + IAI46_03990 0.83 -1.5
862,663 + IAI46_03990 0.86 +0.7
862,663 + IAI46_03990 0.86 -0.1
862,663 + IAI46_03990 0.86 +0.0
862,663 + IAI46_03990 0.86 -0.4
862,663 + IAI46_03990 0.86 -0.2
862,663 + IAI46_03990 0.86 -1.2
862,664 - IAI46_03990 0.86 +1.0
862,664 - IAI46_03990 0.86 -0.9
862,664 - IAI46_03990 0.86 +0.3
862,684 + IAI46_03990 0.88 +0.4
862,685 - IAI46_03990 0.89 +0.3
862,716 - +0.1
862,764 + -0.7
862,767 - +0.7
862,804 + -0.1
862,804 + +0.1
862,805 - -0.6
862,805 - -0.4
862,805 - +0.7
862,805 - -0.1
862,816 + +0.5
862,819 - -2.0
862,830 - +0.1
862,860 + -0.7
862,861 - +0.6
862,871 - +0.8
862,898 + +0.6
862,899 - -0.0
862,899 - -0.4
862,916 + -0.4
862,916 + -0.6
862,917 - +0.2
862,917 - -1.1
862,920 - +0.0
862,920 - +1.8
862,920 - +0.8

Or see this region's nucleotide sequence