Strain Fitness in Serratia liquefaciens MT49 around IAI46_03945

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03935 and IAI46_03940 are separated by 159 nucleotidesIAI46_03940 and IAI46_03945 are separated by 332 nucleotidesIAI46_03945 and IAI46_03950 are separated by 237 nucleotides IAI46_03935: IAI46_03935 - 50S ribosomal protein L19, at 851,795 to 852,151 _03935 IAI46_03940: IAI46_03940 - DNA-binding transcriptional regulator, at 852,311 to 852,529 _03940 IAI46_03945: IAI46_03945 - DUF481 domain-containing protein, at 852,862 to 853,626 _03945 IAI46_03950: IAI46_03950 - anaerobic C4-dicarboxylate transporter, at 853,864 to 855,210 _03950 Position (kb) 852 853 854Strain fitness (log2 ratio) -1 0 1 2at 852.273 kb on - strandat 852.280 kb on + strandat 852.312 kb on + strandat 852.380 kb on + strand, within IAI46_03940at 852.381 kb on - strand, within IAI46_03940at 852.381 kb on - strand, within IAI46_03940at 852.418 kb on + strand, within IAI46_03940at 852.430 kb on + strand, within IAI46_03940at 852.478 kb on - strand, within IAI46_03940at 852.493 kb on + strand, within IAI46_03940at 852.529 kb on + strandat 852.530 kb on - strandat 852.547 kb on - strandat 852.574 kb on - strandat 852.574 kb on - strandat 852.574 kb on - strandat 852.606 kb on + strandat 852.617 kb on + strandat 852.618 kb on - strandat 852.618 kb on - strandat 852.629 kb on + strandat 852.630 kb on - strandat 852.651 kb on + strandat 852.651 kb on + strandat 852.785 kb on + strandat 852.830 kb on + strandat 852.830 kb on + strandat 852.836 kb on + strandat 852.836 kb on + strandat 852.853 kb on + strandat 852.854 kb on - strandat 852.863 kb on + strandat 852.938 kb on + strandat 852.939 kb on - strand, within IAI46_03945at 852.951 kb on - strand, within IAI46_03945at 853.059 kb on + strand, within IAI46_03945at 853.082 kb on + strand, within IAI46_03945at 853.082 kb on + strand, within IAI46_03945at 853.083 kb on - strand, within IAI46_03945at 853.097 kb on + strand, within IAI46_03945at 853.097 kb on + strand, within IAI46_03945at 853.133 kb on + strand, within IAI46_03945at 853.134 kb on - strand, within IAI46_03945at 853.192 kb on - strand, within IAI46_03945at 853.238 kb on + strand, within IAI46_03945at 853.283 kb on + strand, within IAI46_03945at 853.284 kb on - strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.287 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.302 kb on + strand, within IAI46_03945at 853.303 kb on - strand, within IAI46_03945at 853.303 kb on - strand, within IAI46_03945at 853.304 kb on + strand, within IAI46_03945at 853.305 kb on - strand, within IAI46_03945at 853.305 kb on - strand, within IAI46_03945at 853.469 kb on + strand, within IAI46_03945at 853.540 kb on - strand, within IAI46_03945at 853.585 kb on - strandat 853.643 kb on - strandat 853.674 kb on - strandat 853.707 kb on + strandat 853.708 kb on - strandat 853.710 kb on + strandat 853.710 kb on + strandat 853.741 kb on + strandat 853.804 kb on + strandat 853.932 kb on + strandat 853.936 kb on - strandat 854.015 kb on + strand, within IAI46_03950at 854.016 kb on - strand, within IAI46_03950at 854.033 kb on + strand, within IAI46_03950at 854.033 kb on + strand, within IAI46_03950at 854.034 kb on - strand, within IAI46_03950at 854.034 kb on - strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.168 kb on + strand, within IAI46_03950at 854.169 kb on - strand, within IAI46_03950at 854.189 kb on - strand, within IAI46_03950at 854.223 kb on + strand, within IAI46_03950at 854.223 kb on + strand, within IAI46_03950at 854.224 kb on - strand, within IAI46_03950at 854.224 kb on - strand, within IAI46_03950at 854.241 kb on + strand, within IAI46_03950at 854.241 kb on + strand, within IAI46_03950at 854.242 kb on - strand, within IAI46_03950at 854.242 kb on - strand, within IAI46_03950at 854.349 kb on + strand, within IAI46_03950at 854.410 kb on + strand, within IAI46_03950at 854.410 kb on + strand, within IAI46_03950at 854.441 kb on - strand, within IAI46_03950at 854.441 kb on - strand, within IAI46_03950at 854.507 kb on + strand, within IAI46_03950at 854.561 kb on + strand, within IAI46_03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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852,273 - -0.6
852,280 + +1.0
852,312 + -0.2
852,380 + IAI46_03940 0.32 -0.2
852,381 - IAI46_03940 0.32 +0.4
852,381 - IAI46_03940 0.32 -0.3
852,418 + IAI46_03940 0.49 +0.3
852,430 + IAI46_03940 0.54 +0.5
852,478 - IAI46_03940 0.76 +0.9
852,493 + IAI46_03940 0.83 -0.3
852,529 + -0.3
852,530 - +0.6
852,547 - -0.5
852,574 - +1.1
852,574 - -0.3
852,574 - -0.8
852,606 + +0.0
852,617 + -1.2
852,618 - +1.7
852,618 - +0.2
852,629 + +0.4
852,630 - -1.5
852,651 + -0.0
852,651 + +0.7
852,785 + +0.1
852,830 + +1.3
852,830 + -0.1
852,836 + +0.6
852,836 + -1.4
852,853 + -0.3
852,854 - +0.1
852,863 + +0.6
852,938 + +0.3
852,939 - IAI46_03945 0.10 -1.0
852,951 - IAI46_03945 0.12 -0.2
853,059 + IAI46_03945 0.26 -0.9
853,082 + IAI46_03945 0.29 +0.5
853,082 + IAI46_03945 0.29 +1.3
853,083 - IAI46_03945 0.29 +0.3
853,097 + IAI46_03945 0.31 +0.2
853,097 + IAI46_03945 0.31 +0.4
853,133 + IAI46_03945 0.35 -0.4
853,134 - IAI46_03945 0.36 +1.2
853,192 - IAI46_03945 0.43 -0.7
853,238 + IAI46_03945 0.49 +0.2
853,283 + IAI46_03945 0.55 -0.3
853,284 - IAI46_03945 0.55 +0.7
853,287 + IAI46_03945 0.56 -0.1
853,287 + IAI46_03945 0.56 +0.0
853,287 + IAI46_03945 0.56 +0.7
853,287 + IAI46_03945 0.56 +0.1
853,287 + IAI46_03945 0.56 +0.4
853,302 + IAI46_03945 0.58 +0.6
853,302 + IAI46_03945 0.58 +0.1
853,302 + IAI46_03945 0.58 -0.9
853,303 - IAI46_03945 0.58 -1.0
853,303 - IAI46_03945 0.58 -0.7
853,304 + IAI46_03945 0.58 +0.3
853,305 - IAI46_03945 0.58 +0.2
853,305 - IAI46_03945 0.58 +0.6
853,469 + IAI46_03945 0.79 -0.5
853,540 - IAI46_03945 0.89 +2.3
853,585 - +0.3
853,643 - -0.1
853,674 - +0.4
853,707 + +0.3
853,708 - -1.4
853,710 + +0.0
853,710 + +0.4
853,741 + -0.6
853,804 + +0.2
853,932 + +0.3
853,936 - -0.5
854,015 + IAI46_03950 0.11 -0.5
854,016 - IAI46_03950 0.11 +0.4
854,033 + IAI46_03950 0.13 -0.1
854,033 + IAI46_03950 0.13 -0.8
854,034 - IAI46_03950 0.13 +0.0
854,034 - IAI46_03950 0.13 -1.0
854,168 + IAI46_03950 0.23 -0.3
854,168 + IAI46_03950 0.23 +2.0
854,168 + IAI46_03950 0.23 +0.2
854,169 - IAI46_03950 0.23 +1.0
854,189 - IAI46_03950 0.24 +0.8
854,223 + IAI46_03950 0.27 +0.5
854,223 + IAI46_03950 0.27 -0.3
854,224 - IAI46_03950 0.27 -0.3
854,224 - IAI46_03950 0.27 +0.1
854,241 + IAI46_03950 0.28 -0.9
854,241 + IAI46_03950 0.28 +0.7
854,242 - IAI46_03950 0.28 +0.9
854,242 - IAI46_03950 0.28 -0.3
854,349 + IAI46_03950 0.36 +1.3
854,410 + IAI46_03950 0.41 -0.4
854,410 + IAI46_03950 0.41 +0.2
854,441 - IAI46_03950 0.43 +0.9
854,441 - IAI46_03950 0.43 -0.6
854,507 + IAI46_03950 0.48 +0.1
854,561 + IAI46_03950 0.52 -0.6

Or see this region's nucleotide sequence