Experiment: Nickel (II) chloride 80 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_03930 and IAI46_03935 are separated by 54 nucleotides IAI46_03935 and IAI46_03940 are separated by 159 nucleotides IAI46_03940 and IAI46_03945 are separated by 332 nucleotides
IAI46_03930: IAI46_03930 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 850,973 to 851,740
_03930
IAI46_03935: IAI46_03935 - 50S ribosomal protein L19, at 851,795 to 852,151
_03935
IAI46_03940: IAI46_03940 - DNA-binding transcriptional regulator, at 852,311 to 852,529
_03940
IAI46_03945: IAI46_03945 - DUF481 domain-containing protein, at 852,862 to 853,626
_03945
Position (kb) 852
853 Strain fitness (log2 ratio) -1
0
1 at 852.273 kb on - strand at 852.280 kb on + strand at 852.312 kb on + strand at 852.380 kb on + strand, within IAI46_03940 at 852.381 kb on - strand, within IAI46_03940 at 852.381 kb on - strand, within IAI46_03940 at 852.418 kb on + strand, within IAI46_03940 at 852.430 kb on + strand, within IAI46_03940 at 852.478 kb on - strand, within IAI46_03940 at 852.493 kb on + strand, within IAI46_03940 at 852.529 kb on + strand at 852.530 kb on - strand at 852.547 kb on - strand at 852.574 kb on - strand at 852.574 kb on - strand at 852.574 kb on - strand at 852.606 kb on + strand at 852.617 kb on + strand at 852.618 kb on - strand at 852.618 kb on - strand at 852.629 kb on + strand at 852.630 kb on - strand at 852.651 kb on + strand at 852.651 kb on + strand at 852.785 kb on + strand at 852.830 kb on + strand at 852.830 kb on + strand at 852.836 kb on + strand at 852.836 kb on + strand at 852.853 kb on + strand at 852.854 kb on - strand at 852.863 kb on + strand at 852.938 kb on + strand at 852.939 kb on - strand, within IAI46_03945 at 852.951 kb on - strand, within IAI46_03945 at 853.059 kb on + strand, within IAI46_03945 at 853.082 kb on + strand, within IAI46_03945 at 853.082 kb on + strand, within IAI46_03945 at 853.083 kb on - strand, within IAI46_03945 at 853.097 kb on + strand, within IAI46_03945 at 853.097 kb on + strand, within IAI46_03945 at 853.133 kb on + strand, within IAI46_03945 at 853.134 kb on - strand, within IAI46_03945 at 853.192 kb on - strand, within IAI46_03945 at 853.238 kb on + strand, within IAI46_03945 at 853.283 kb on + strand, within IAI46_03945 at 853.284 kb on - strand, within IAI46_03945 at 853.287 kb on + strand, within IAI46_03945 at 853.287 kb on + strand, within IAI46_03945 at 853.287 kb on + strand, within IAI46_03945 at 853.287 kb on + strand, within IAI46_03945 at 853.287 kb on + strand, within IAI46_03945 at 853.302 kb on + strand, within IAI46_03945 at 853.302 kb on + strand, within IAI46_03945 at 853.302 kb on + strand, within IAI46_03945 at 853.303 kb on - strand, within IAI46_03945 at 853.303 kb on - strand, within IAI46_03945 at 853.304 kb on + strand, within IAI46_03945 at 853.305 kb on - strand, within IAI46_03945 at 853.305 kb on - strand, within IAI46_03945 at 853.469 kb on + strand, within IAI46_03945
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic remove 852,273 - -0.6 852,280 + +1.0 852,312 + -0.2 852,380 + IAI46_03940 0.32 -0.2 852,381 - IAI46_03940 0.32 +0.4 852,381 - IAI46_03940 0.32 -0.3 852,418 + IAI46_03940 0.49 +0.3 852,430 + IAI46_03940 0.54 +0.5 852,478 - IAI46_03940 0.76 +0.9 852,493 + IAI46_03940 0.83 -0.3 852,529 + -0.3 852,530 - +0.6 852,547 - -0.5 852,574 - +1.1 852,574 - -0.3 852,574 - -0.8 852,606 + +0.0 852,617 + -1.2 852,618 - +1.7 852,618 - +0.2 852,629 + +0.4 852,630 - -1.5 852,651 + -0.0 852,651 + +0.7 852,785 + +0.1 852,830 + +1.3 852,830 + -0.1 852,836 + +0.6 852,836 + -1.4 852,853 + -0.3 852,854 - +0.1 852,863 + +0.6 852,938 + +0.3 852,939 - IAI46_03945 0.10 -1.0 852,951 - IAI46_03945 0.12 -0.2 853,059 + IAI46_03945 0.26 -0.9 853,082 + IAI46_03945 0.29 +0.5 853,082 + IAI46_03945 0.29 +1.3 853,083 - IAI46_03945 0.29 +0.3 853,097 + IAI46_03945 0.31 +0.2 853,097 + IAI46_03945 0.31 +0.4 853,133 + IAI46_03945 0.35 -0.4 853,134 - IAI46_03945 0.36 +1.2 853,192 - IAI46_03945 0.43 -0.7 853,238 + IAI46_03945 0.49 +0.2 853,283 + IAI46_03945 0.55 -0.3 853,284 - IAI46_03945 0.55 +0.7 853,287 + IAI46_03945 0.56 -0.1 853,287 + IAI46_03945 0.56 +0.0 853,287 + IAI46_03945 0.56 +0.7 853,287 + IAI46_03945 0.56 +0.1 853,287 + IAI46_03945 0.56 +0.4 853,302 + IAI46_03945 0.58 +0.6 853,302 + IAI46_03945 0.58 +0.1 853,302 + IAI46_03945 0.58 -0.9 853,303 - IAI46_03945 0.58 -1.0 853,303 - IAI46_03945 0.58 -0.7 853,304 + IAI46_03945 0.58 +0.3 853,305 - IAI46_03945 0.58 +0.2 853,305 - IAI46_03945 0.58 +0.6 853,469 + IAI46_03945 0.79 -0.5
Or see this region's nucleotide sequence