Strain Fitness in Serratia liquefaciens MT49 around IAI46_03890

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03875 and IAI46_03885 are separated by 321 nucleotidesIAI46_03885 and IAI46_03890 overlap by 4 nucleotidesIAI46_03890 and IAI46_03895 are separated by 82 nucleotides IAI46_03875: IAI46_03875 - tRNA-Arg, at 842,452 to 842,528 _03875 IAI46_03885: IAI46_03885 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 842,850 to 843,416 _03885 IAI46_03890: IAI46_03890 - DedA family protein, at 843,413 to 843,841 _03890 IAI46_03895: IAI46_03895 - glutamate--cysteine ligase, at 843,924 to 845,486 _03895 Position (kb) 843 844Strain fitness (log2 ratio) -2 -1 0 1 2at 842.445 kb on + strandat 842.448 kb on + strandat 842.460 kb on - strand, within IAI46_03875at 842.606 kb on + strandat 842.680 kb on + strandat 842.680 kb on + strandat 842.681 kb on - strandat 842.727 kb on + strandat 842.727 kb on + strandat 842.727 kb on + strandat 842.728 kb on - strandat 842.732 kb on + strandat 842.732 kb on + strandat 842.853 kb on + strandat 842.853 kb on + strandat 842.854 kb on - strandat 842.854 kb on - strandat 842.854 kb on - strandat 842.873 kb on + strandat 843.144 kb on + strand, within IAI46_03885at 843.144 kb on + strand, within IAI46_03885at 843.144 kb on + strand, within IAI46_03885at 843.145 kb on - strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.262 kb on + strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.263 kb on - strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.313 kb on + strand, within IAI46_03885at 843.314 kb on - strand, within IAI46_03885at 843.362 kb on + strandat 843.387 kb on - strandat 843.387 kb on - strandat 843.397 kb on + strandat 843.397 kb on + strandat 843.398 kb on - strandat 843.408 kb on - strandat 843.419 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.422 kb on - strandat 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.792 kb on - strand, within IAI46_03890at 843.805 kb on + strandat 843.806 kb on - strandat 843.806 kb on - strandat 843.810 kb on + strandat 843.810 kb on + strandat 843.851 kb on + strandat 843.851 kb on + strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.852 kb on - strandat 843.854 kb on - strandat 843.862 kb on - strandat 843.891 kb on - strandat 843.906 kb on + strandat 843.907 kb on - strandat 843.937 kb on + strandat 843.979 kb on + strandat 844.121 kb on - strand, within IAI46_03895at 844.121 kb on - strand, within IAI46_03895at 844.127 kb on + strand, within IAI46_03895at 844.128 kb on - strand, within IAI46_03895at 844.188 kb on + strand, within IAI46_03895at 844.193 kb on - strand, within IAI46_03895at 844.193 kb on - strand, within IAI46_03895at 844.217 kb on + strand, within IAI46_03895at 844.217 kb on + strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.218 kb on - strand, within IAI46_03895at 844.244 kb on + strand, within IAI46_03895at 844.314 kb on + strand, within IAI46_03895at 844.374 kb on + strand, within IAI46_03895at 844.461 kb on + strand, within IAI46_03895at 844.479 kb on - strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.482 kb on + strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.483 kb on - strand, within IAI46_03895at 844.510 kb on - strand, within IAI46_03895at 844.584 kb on - strand, within IAI46_03895at 844.602 kb on + strand, within IAI46_03895at 844.645 kb on - strand, within IAI46_03895at 844.645 kb on - strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.698 kb on + strand, within IAI46_03895at 844.699 kb on - strand, within IAI46_03895at 844.776 kb on + strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895at 844.822 kb on - strand, within IAI46_03895

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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842,445 + -0.6
842,448 + +1.5
842,460 - IAI46_03875 0.10 -0.3
842,606 + +0.6
842,680 + +0.9
842,680 + +0.3
842,681 - -1.3
842,727 + -0.6
842,727 + +0.0
842,727 + -0.3
842,728 - +1.1
842,732 + -0.1
842,732 + +1.3
842,853 + -2.4
842,853 + +0.6
842,854 - +1.5
842,854 - -0.1
842,854 - -1.0
842,873 + +0.2
843,144 + IAI46_03885 0.52 -1.4
843,144 + IAI46_03885 0.52 -0.3
843,144 + IAI46_03885 0.52 -1.1
843,145 - IAI46_03885 0.52 +0.3
843,262 + IAI46_03885 0.73 -0.3
843,262 + IAI46_03885 0.73 +0.5
843,262 + IAI46_03885 0.73 +0.0
843,263 - IAI46_03885 0.73 +0.5
843,263 - IAI46_03885 0.73 +0.9
843,263 - IAI46_03885 0.73 -0.6
843,313 + IAI46_03885 0.82 -0.4
843,313 + IAI46_03885 0.82 +0.7
843,313 + IAI46_03885 0.82 +1.0
843,313 + IAI46_03885 0.82 -0.6
843,314 - IAI46_03885 0.82 -1.3
843,362 + -0.6
843,387 - +0.6
843,387 - -0.4
843,397 + -0.2
843,397 + +0.0
843,398 - +0.2
843,408 - -1.0
843,419 - -0.0
843,422 - +0.5
843,422 - +0.5
843,422 - -0.1
843,422 - -0.2
843,422 - +1.0
843,792 - IAI46_03890 0.88 +0.5
843,792 - IAI46_03890 0.88 +0.4
843,792 - IAI46_03890 0.88 +0.5
843,792 - IAI46_03890 0.88 -0.7
843,805 + +0.9
843,806 - -2.4
843,806 - -0.8
843,810 + -0.6
843,810 + +0.5
843,851 + +0.0
843,851 + -0.2
843,852 - +0.0
843,852 - +0.6
843,852 - +0.7
843,852 - +0.8
843,854 - +0.3
843,862 - -1.0
843,891 - +2.5
843,906 + -0.7
843,907 - +0.4
843,937 + +0.0
843,979 + +0.8
844,121 - IAI46_03895 0.13 +0.8
844,121 - IAI46_03895 0.13 +0.0
844,127 + IAI46_03895 0.13 +0.4
844,128 - IAI46_03895 0.13 +0.9
844,188 + IAI46_03895 0.17 -1.6
844,193 - IAI46_03895 0.17 -0.1
844,193 - IAI46_03895 0.17 +0.6
844,217 + IAI46_03895 0.19 +1.0
844,217 + IAI46_03895 0.19 +0.3
844,218 - IAI46_03895 0.19 -1.2
844,218 - IAI46_03895 0.19 +0.6
844,218 - IAI46_03895 0.19 -0.6
844,244 + IAI46_03895 0.20 +1.3
844,314 + IAI46_03895 0.25 +2.0
844,374 + IAI46_03895 0.29 +0.0
844,461 + IAI46_03895 0.34 +0.8
844,479 - IAI46_03895 0.36 +0.3
844,482 + IAI46_03895 0.36 +0.6
844,482 + IAI46_03895 0.36 -1.0
844,482 + IAI46_03895 0.36 +1.4
844,482 + IAI46_03895 0.36 +0.9
844,483 - IAI46_03895 0.36 +0.6
844,483 - IAI46_03895 0.36 -0.9
844,483 - IAI46_03895 0.36 +0.1
844,510 - IAI46_03895 0.37 -1.2
844,584 - IAI46_03895 0.42 +0.3
844,602 + IAI46_03895 0.43 -0.3
844,645 - IAI46_03895 0.46 +1.1
844,645 - IAI46_03895 0.46 +1.6
844,698 + IAI46_03895 0.50 +0.6
844,698 + IAI46_03895 0.50 +0.4
844,698 + IAI46_03895 0.50 +2.0
844,699 - IAI46_03895 0.50 +0.0
844,776 + IAI46_03895 0.55 +1.1
844,822 - IAI46_03895 0.57 -0.1
844,822 - IAI46_03895 0.57 -0.3
844,822 - IAI46_03895 0.57 +2.0

Or see this region's nucleotide sequence