Strain Fitness in Serratia liquefaciens MT49 around IAI46_03685

Experiment: Nickel (II) chloride 80 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03675 and IAI46_03680 are separated by 29 nucleotidesIAI46_03680 and IAI46_03685 are separated by 437 nucleotidesIAI46_03685 and IAI46_03690 overlap by 1 nucleotides IAI46_03675: IAI46_03675 - 7-carboxy-7-deazaguanine synthase QueE, at 801,612 to 802,283 _03675 IAI46_03680: IAI46_03680 - 6-carboxytetrahydropterin synthase QueD, at 802,313 to 802,672 _03680 IAI46_03685: IAI46_03685 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 803,110 to 804,909 _03685 IAI46_03690: IAI46_03690 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 804,909 to 806,624 _03690 Position (kb) 803 804 805Strain fitness (log2 ratio) -2 -1 0 1 2at 802.263 kb on - strandat 802.267 kb on - strandat 802.321 kb on + strandat 802.322 kb on - strandat 802.323 kb on + strandat 802.324 kb on - strandat 802.324 kb on - strandat 802.324 kb on - strandat 802.324 kb on - strandat 802.324 kb on - strandat 802.324 kb on - strandat 802.447 kb on + strand, within IAI46_03680at 802.458 kb on + strand, within IAI46_03680at 802.458 kb on + strand, within IAI46_03680at 802.459 kb on - strand, within IAI46_03680at 802.459 kb on - strand, within IAI46_03680at 802.501 kb on + strand, within IAI46_03680at 802.501 kb on + strand, within IAI46_03680at 802.531 kb on + strand, within IAI46_03680at 802.553 kb on + strand, within IAI46_03680at 802.570 kb on + strand, within IAI46_03680at 802.600 kb on + strand, within IAI46_03680at 802.601 kb on - strand, within IAI46_03680at 802.613 kb on + strand, within IAI46_03680at 802.613 kb on + strand, within IAI46_03680at 802.673 kb on + strandat 802.674 kb on - strandat 802.736 kb on + strandat 802.736 kb on + strandat 802.737 kb on - strandat 802.737 kb on - strandat 802.738 kb on + strandat 802.739 kb on - strandat 802.739 kb on - strandat 802.739 kb on - strandat 802.745 kb on - strandat 802.777 kb on + strandat 802.914 kb on - strandat 802.937 kb on - strandat 802.937 kb on - strandat 802.953 kb on - strandat 802.953 kb on - strandat 802.956 kb on + strandat 802.956 kb on + strandat 802.956 kb on + strandat 802.956 kb on + strandat 802.957 kb on - strandat 802.957 kb on - strandat 802.957 kb on - strandat 802.957 kb on - strandat 802.962 kb on + strandat 802.963 kb on - strandat 802.969 kb on + strandat 802.969 kb on + strandat 802.970 kb on - strandat 802.974 kb on - strandat 802.983 kb on + strandat 802.983 kb on + strandat 802.984 kb on - strandat 802.984 kb on - strandat 802.984 kb on - strandat 802.984 kb on - strandat 802.984 kb on - strandat 803.001 kb on + strandat 803.079 kb on + strandat 803.079 kb on + strandat 803.080 kb on - strandat 803.080 kb on - strandat 803.090 kb on + strandat 803.093 kb on - strandat 803.099 kb on + strandat 803.099 kb on + strandat 803.099 kb on + strandat 803.103 kb on + strandat 803.104 kb on - strandat 803.104 kb on - strandat 803.224 kb on + strandat 803.407 kb on + strand, within IAI46_03685at 803.502 kb on + strand, within IAI46_03685at 803.536 kb on - strand, within IAI46_03685at 803.658 kb on - strand, within IAI46_03685at 804.054 kb on - strand, within IAI46_03685at 804.089 kb on + strand, within IAI46_03685at 804.090 kb on - strand, within IAI46_03685at 804.103 kb on + strand, within IAI46_03685at 804.390 kb on + strand, within IAI46_03685at 804.391 kb on - strand, within IAI46_03685at 804.432 kb on + strand, within IAI46_03685at 804.432 kb on + strand, within IAI46_03685at 804.433 kb on - strand, within IAI46_03685at 804.519 kb on + strand, within IAI46_03685at 804.586 kb on - strand, within IAI46_03685at 804.622 kb on + strand, within IAI46_03685at 804.623 kb on - strand, within IAI46_03685at 804.682 kb on - strand, within IAI46_03685at 804.688 kb on + strand, within IAI46_03685at 804.689 kb on - strand, within IAI46_03685at 804.689 kb on - strand, within IAI46_03685at 804.757 kb on + strandat 804.757 kb on + strandat 804.806 kb on + strandat 804.806 kb on + strandat 804.864 kb on - strandat 804.904 kb on + strandat 804.904 kb on + strandat 805.040 kb on + strandat 805.081 kb on - strand, within IAI46_03690at 805.178 kb on + strand, within IAI46_03690at 805.178 kb on + strand, within IAI46_03690at 805.179 kb on - strand, within IAI46_03690at 805.208 kb on + strand, within IAI46_03690at 805.209 kb on - strand, within IAI46_03690at 805.234 kb on - strand, within IAI46_03690at 805.298 kb on + strand, within IAI46_03690at 805.419 kb on + strand, within IAI46_03690at 805.539 kb on + strand, within IAI46_03690at 805.708 kb on - strand, within IAI46_03690at 805.735 kb on - strand, within IAI46_03690at 805.737 kb on - strand, within IAI46_03690at 805.751 kb on + strand, within IAI46_03690at 805.752 kb on - strand, within IAI46_03690at 805.833 kb on + strand, within IAI46_03690at 805.834 kb on - strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690at 805.859 kb on + strand, within IAI46_03690

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 80 uM, anaerobic
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802,263 - +0.6
802,267 - +0.1
802,321 + +0.9
802,322 - -0.1
802,323 + +0.0
802,324 - -0.4
802,324 - +0.8
802,324 - +0.4
802,324 - +0.5
802,324 - +0.1
802,324 - +0.4
802,447 + IAI46_03680 0.37 +0.7
802,458 + IAI46_03680 0.40 -0.1
802,458 + IAI46_03680 0.40 +0.9
802,459 - IAI46_03680 0.41 -0.6
802,459 - IAI46_03680 0.41 -0.2
802,501 + IAI46_03680 0.52 -0.8
802,501 + IAI46_03680 0.52 -0.0
802,531 + IAI46_03680 0.61 -0.0
802,553 + IAI46_03680 0.67 -0.1
802,570 + IAI46_03680 0.71 -0.2
802,600 + IAI46_03680 0.80 +0.0
802,601 - IAI46_03680 0.80 +0.4
802,613 + IAI46_03680 0.83 -0.8
802,613 + IAI46_03680 0.83 -0.5
802,673 + +0.4
802,674 - -0.0
802,736 + -0.4
802,736 + +0.6
802,737 - +0.7
802,737 - +0.8
802,738 + -0.2
802,739 - -0.2
802,739 - +0.3
802,739 - +1.4
802,745 - +0.4
802,777 + -0.3
802,914 - -0.5
802,937 - +2.0
802,937 - -0.5
802,953 - +0.2
802,953 - +1.0
802,956 + -0.1
802,956 + +2.2
802,956 + +0.7
802,956 + -0.3
802,957 - +0.2
802,957 - +0.2
802,957 - +0.1
802,957 - -0.0
802,962 + -2.1
802,963 - +0.3
802,969 + -0.1
802,969 + +0.0
802,970 - -0.3
802,974 - -0.1
802,983 + -0.8
802,983 + +0.4
802,984 - +0.0
802,984 - +0.1
802,984 - -0.9
802,984 - -0.5
802,984 - +0.2
803,001 + -0.4
803,079 + +0.1
803,079 + -0.6
803,080 - +0.1
803,080 - +0.6
803,090 + +0.9
803,093 - -2.2
803,099 + +1.0
803,099 + +0.1
803,099 + +0.2
803,103 + -2.0
803,104 - -0.7
803,104 - -1.6
803,224 + -0.1
803,407 + IAI46_03685 0.17 +0.1
803,502 + IAI46_03685 0.22 +1.0
803,536 - IAI46_03685 0.24 -0.0
803,658 - IAI46_03685 0.30 +0.6
804,054 - IAI46_03685 0.52 -0.0
804,089 + IAI46_03685 0.54 +0.0
804,090 - IAI46_03685 0.54 +0.8
804,103 + IAI46_03685 0.55 +0.8
804,390 + IAI46_03685 0.71 +0.5
804,391 - IAI46_03685 0.71 +0.4
804,432 + IAI46_03685 0.73 +0.9
804,432 + IAI46_03685 0.73 -1.2
804,433 - IAI46_03685 0.73 +0.3
804,519 + IAI46_03685 0.78 +0.2
804,586 - IAI46_03685 0.82 +0.2
804,622 + IAI46_03685 0.84 +0.1
804,623 - IAI46_03685 0.84 +0.2
804,682 - IAI46_03685 0.87 +0.7
804,688 + IAI46_03685 0.88 -0.2
804,689 - IAI46_03685 0.88 +0.2
804,689 - IAI46_03685 0.88 -2.3
804,757 + -1.1
804,757 + +0.1
804,806 + -0.1
804,806 + +1.0
804,864 - +0.2
804,904 + +0.1
804,904 + +2.0
805,040 + -0.2
805,081 - IAI46_03690 0.10 +0.7
805,178 + IAI46_03690 0.16 -1.0
805,178 + IAI46_03690 0.16 +0.2
805,179 - IAI46_03690 0.16 +0.6
805,208 + IAI46_03690 0.17 -0.1
805,209 - IAI46_03690 0.17 -0.8
805,234 - IAI46_03690 0.19 -0.6
805,298 + IAI46_03690 0.23 +0.4
805,419 + IAI46_03690 0.30 +0.4
805,539 + IAI46_03690 0.37 -0.7
805,708 - IAI46_03690 0.47 -0.5
805,735 - IAI46_03690 0.48 -1.1
805,737 - IAI46_03690 0.48 -0.3
805,751 + IAI46_03690 0.49 -0.5
805,752 - IAI46_03690 0.49 +0.4
805,833 + IAI46_03690 0.54 +0.5
805,834 - IAI46_03690 0.54 +0.2
805,859 + IAI46_03690 0.55 +0.4
805,859 + IAI46_03690 0.55 -1.7
805,859 + IAI46_03690 0.55 +0.8

Or see this region's nucleotide sequence